Array 1 1-1247 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVU010000172.1 Erwinia amylovora strain Ea1-97 Ea1-97_contig_172, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 27 93.1 32 --........................... CTGATGAGCGGGTGGGGCAGGTAACACTAACT 60 29 100.0 32 ............................. AACTGCAGCAGCTCGTGCACCACTCCTTTGCT 121 29 96.6 32 ............................A AGATGCTGGGATCAATAAATCAGACCCACGAC 182 29 96.6 32 ............................A GTATTGCGGAGGCTATATGACAGATAAAAGCA 243 29 100.0 32 ............................. CGGTACTATTAACGCTTTTCGCACGCTAGGTA 304 29 100.0 32 ............................. TCGATTGTTACTTACAGCGCCGGTCGGATATC 365 29 100.0 32 ............................. CGGCGATATTTAGCCCGTCAGGACTGCAAAAA 426 29 100.0 32 ............................. CGCTGCCTTTCCTTCCGAATATCGAGCGCAGC 487 29 100.0 32 ............................. CCACCCTACATTGTGGCGCATGTGGGCGCAAA 548 29 96.6 32 ..................A.......... CCAGTATTGAGAGGTGGAGAATCCGTTATAGG 609 29 100.0 32 ............................. GCATCAGGAGGCATGGATGGCCTTGAAAGATC 670 29 100.0 32 ............................. CAAGCTAAAGCTGGATGCCAGATAACATGGGA 731 29 100.0 32 ............................. TTTTCCAGTGGATTTTCTGCCAGATTTCGGCA 792 29 100.0 32 ............................. GCCGATCTCGGAACAAACAGCCATCTATATGT 853 29 100.0 32 ............................. TCAGCGCTGGGGAATTCCTCGTCGAGAAATAT 914 29 100.0 32 ............................. GAACCATAGAGCCGGGAGATCTAATTTTCGTA 975 29 100.0 32 ............................. TTGGGCGAGATTACTACCCTTTGGAGGGTTGA 1036 29 100.0 32 ............................. GGGATTCAGCGGGTAAGCGCGAGCGTTAACAG 1097 29 100.0 32 ............................. TGCCGGAGCAAGAGACCCCCACAATGGACTCT 1158 29 100.0 32 ............................. CATTCCTGAAATTGAGCAGGCAGATAGCTTAG 1219 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.2 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : | # Right flank : GGCAGAACATGCAAACTTATGACCGCGCAACCGTGTTCCCCGCGTGAGCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-261 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVU010000180.1 Erwinia amylovora strain Ea1-97 Ea1-97_contig_180, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 18 62.1 32 -----------.................. AGGAGCCTAATGATTACGGCGAGTATATCGAT 51 29 100.0 32 ............................. ATCACGCATTACCGGAGATACCTGATGTTGAC 112 29 100.0 32 ............................. CCATCTCAGCCGTGAGCAATCAATCCTCATTG 173 29 100.0 32 ............................. AGCTGGTTTTTTTTGTCCCCGCTAAAAAATGA 234 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 5 29 91.7 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : | # Right flank : | # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19180-18912 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVU010000055.1 Erwinia amylovora strain Ea1-97 Ea1-97_contig_55, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19179 28 89.3 31 ......C...........G........T TTACGTTTGCGTTAACAGTAAGCTCTGCAAC 19120 28 100.0 32 ............................ GAGCAATATATTCGATAGACGCTGATTTGCGT 19060 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 19000 28 100.0 33 ............................ GCCAACGTTCACTGTCATTTAGCCACGCTTCGG 18939 28 75.0 0 .....A........G....TT...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 5 28 92.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGCGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCACCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGATTGGCGTTATAGGATGGTTGTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTAAATGCGATAAGCCAGTTAGCGTAGTAATGTAACG # Right flank : TGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCATCACGGGCTTCTCATCCTGTGGACATTACGCTGAAAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGTTTAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAATCGCGGGTTTTTCACGGTTTTTTTACAATAAATAAAGAAAGATCTTATTTTTTTCTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTAAAATTTTTTTGCTCAATAATTTCCAGAACTTTCATTTTGAGTTGGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGAATTTAATGAAATGCAAA # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 30564-28645 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVU010000055.1 Erwinia amylovora strain Ea1-97 Ea1-97_contig_55, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30563 29 100.0 32 ............................. AAGTCATCAGCAATATCGCCAAGGTAGTCATC 30502 29 100.0 32 ............................. CCGGGTATGACTTTTACAGCACATTTTCAGAT 30441 29 100.0 32 ............................. TACCCAATGCCACCCAACAAATTTCTGATTTG 30380 29 100.0 32 ............................. CTCGTCGATATGCTTAACGCCGAACTCTTTAT 30319 29 100.0 32 ............................. AATATGAAGCACTCATCACGTCCTCTTCTATT 30258 29 100.0 32 ............................. CAGCAGTTGCAGCTGCCTGTCCCATGAGCATG 30197 29 100.0 32 ............................. GTTCTTACTTCGGATTAACTTAATAACGCTCT 30136 29 100.0 32 ............................. AAATCCGCCGCATGGCAGAGATGGATGGAATT 30075 29 100.0 32 ............................. AGTGCGGCAGTTTTGGCCGCTCAAATTGCAGC 30014 29 100.0 32 ............................. CGATTTGGCGGAAATGTCGGCGGAGATGCCCC 29953 29 100.0 32 ............................. CCATTGCGTTGCGTGACGTGGTTCGCGTTACT 29892 29 100.0 32 ............................. ATGGCCTAAAGCACCGCCTGGTGTCTCAAAAT 29831 29 100.0 32 ............................. AAAACAGCCCCATTCCGGGCGCTACTTCAGAT 29770 29 100.0 32 ............................. CTTGCGGACAGAATTTCTGACGCAGGCGCAAT 29709 29 100.0 32 ............................. CTATCTCGAAATGTGAGCCGCAGTCCCCAGCG 29648 29 100.0 32 ............................. CCATCGCCGGAGCCGGAGCCATCGCCGGATCC 29587 29 100.0 32 ............................. CCATATAGCAGATACGCCCAGCGCTTCCGCTA 29526 29 100.0 32 ............................. TCAATTGCATGCTGCCGGGAATCAAAAACAAA 29465 29 100.0 32 ............................. ATAAAAAGGCTCATGAATAACTTACTTCTGCC 29404 29 100.0 32 ............................. CGGCACACCCGCCTGAACTAACCAGCTCGCCC 29343 29 96.6 32 .................A........... GCAGCTGGCAATGATGACGAATGAGGATAGAC 29282 29 100.0 32 ............................. GGGGAATAAAGATATTAATCAGGATTTGCGTG 29221 29 100.0 32 ............................. TGCAGGCGCTGCAGGAGGGGGAGAACGTCACC 29160 29 100.0 32 ............................. CTGAAAATGAGTGGTGGGCAGCCGGGAGTTAG 29099 29 100.0 32 ............................. TCATAGTATTCCATCACTACGACACCCGTTAC 29038 29 96.6 32 ............................C AATGCCAGTACGAGCGCGCCTTAAATATCTGG 28977 29 100.0 32 ............................. TTGGCCACCAACAACAACGCATGGCATGTTTA 28916 29 100.0 32 ............................. CCAGAGGACAACTTTCCGCCTTTTCTCTGCGT 28855 29 93.1 32 .................A..........C AGGTGGCGGAATACGGCAACGAGTGGATAACT 28794 29 96.6 32 ......T...................... CGGATCACCTCTTCGCCCAGCCAGCTGTTCAG 28733 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 28672 28 79.3 0 ...........AC..A-....C......A | ========== ====== ====== ====== ============================= ================================ ================== 32 29 98.7 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : TCCTCTGATTGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCTACCCCCGCAGGATACCCAGCCGGTTGCCATCCCTGAACCTCAGTCTCTTGGCGATGTCGGGCACCGGAGTTCGTAATATGAGTATGCTGGTAGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGTGTGCGGGAAATGATTTGGCAGCAGCTGAATCAGCTCTACGAGAATGGCAATGTGGCGATGGTATGGGCCACCAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCGGTCTGACATTTAAAAACGGGTCTTTTTCACAGTAGATAATCTGGTAGATTTTGACGGGTGAAAAAATCCGTTATAATTCAGCTGGATGGATTTAGA # Right flank : ATGATATGTTTAATGCCAGCCCGGCCTCGGTATTGCCTCGCCGGACTGAGCCTGAATACATTACCGGCAAAAGAGGGTAACACTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGGCTGGTCGAATATCGCCCTGGGTGCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTAAAACCAGCAAGGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAATCCCTCTTTGGCTGGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 61703-60331 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVU010000055.1 Erwinia amylovora strain Ea1-97 Ea1-97_contig_55, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 61702 27 93.1 32 --........................... GTTATTAGCAATAAGGGCATGCAGGGCAGTGG 61643 29 100.0 33 ............................. TAAGTCTGTCTCCGCGCGGTCAATCTCGCGCTG 61581 29 100.0 32 ............................. GCTTCCTCGTCAGAAAGTGAATAAAGCAAAAA 61520 29 100.0 32 ............................. AGTCCATCGACACGGGCATAGAGTCGGCGCGT 61459 29 100.0 32 ............................. GTGGTTAGCGCTGTCACTACTGGTAATCAGTT 61398 29 100.0 32 ............................. CCACGCGATGGAAAACATGTTTGAAAACTCTC 61337 29 100.0 32 ............................. ATTGAACTGCGACAGCACATTTGACCCGATAT 61276 29 100.0 32 ............................. CGTAAAATTGCGCTCTGCAAATTCTTGTGAGC 61215 29 100.0 32 ............................. GCGGATTCACCATCGCGCACGAACTCGCACAT 61154 29 100.0 32 ............................. CCAGGGACAATTCGATGCGCTGGTGTCATTCG 61093 29 100.0 32 ............................. CCTCCTGTTTTGGGGTTAGCCCTGCCATTTTA 61032 29 100.0 32 ............................. CAACACAATGATTGCATCCAGAAGGGCGGTAC 60971 29 100.0 32 ............................. TTTTGGTGGATGTCAGGGCGGCACCACATCTT 60910 29 100.0 32 ............................. CATGGTCCGAATCGATAAAAGGCGCTGATGCC 60849 29 100.0 32 ............................. CTGGGTGGCTCAGAGTTTGCGAGCATATCTCC 60788 29 100.0 32 ............................. AATTAATCCAGCTGTTCGGTAATGCTGTTGCT 60727 29 100.0 33 ............................. CCTGCTGGTTGAGGTCGAACTGCGCGGCCGCAT 60665 29 100.0 32 ............................. ATCCATCAGTTCCCTAATAACGATATCGGTTA 60604 29 100.0 33 ............................. TTTATACCCGTACCGCGCAGATTCTGGCTGACA 60542 29 100.0 32 ............................. TCCCGATGATCTGTTTAGTTCCATTATCCAGC 60481 29 100.0 32 ............................. TTGGTGGTGTTCTCGGTTACAGGAGGAAAGAT 60420 29 100.0 32 ............................. GCAAAAAAACATGACTGCATATCTGTATCGGA 60359 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.7 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : | # Right flank : CCAATTGTACTGGTCTGTCGCTCAACCATGTCACCGATGCAGAGGTGTCTCCAACACTCATGGGCCGGAGAAACCAATGCATACCCCACTGACGGAGCTTATGACATCCGGTTGGGGCATGATCAACGGGGGCATACGATAATCAGATTTGTCCCCCTTCCCGGCTTACTGGCAAGAAGAATATGCAGATGCACCGGGCGCTAAATAGCCGTTCAAAATAGTAGATCACTTTGAGGGCACACAACCCGGATTATGCGATCTTATCAATCGCTGAATATCCCAAATCACCAACCGGACTGAGCGATGCCGTTCATAGCATCAATACCTCGTAGCAAACGCCGCCGGATGCAGAAAACCCTTCACAAAACCCGGGATAAAAATCATGCTCGCAGGCTTACCGCCATGCTGATGCTGCATCGTGGAGACCGCGTCAGCAACGTTGCCAGAACAGCTTTGCTGGGGCCGTTGTTCCATTGGCCATTAGATTAACTGGTTTACCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //