Array 1 566-2063 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDVQ01000114.1 Neisseria meningitidis strain N753_00 NODE_114_length_2154_cov_22.6423_ID_227, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 566 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 632 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 698 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 764 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 830 36 100.0 42 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 908 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 974 36 100.0 30 .................................... AAAAACTTTTTAGGGGGGTCGGAAAAATAC 1040 36 100.0 30 .................................... ATTTATATTATTTTTGATTTTGATTTTTTT 1106 36 100.0 30 .................................... ATATCGTACTCTTTTACGTTATTAACAAAT 1172 36 100.0 30 .................................... CTGAAAGGTAAGGAACGGGCGGCTTGTGAG 1238 36 100.0 30 .................................... ACGGCTGCCGCAACGCCGCCCGAAACCATC 1304 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 1370 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 1436 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 1502 36 100.0 29 .................................... CAAAAACTTTTTAGGGGGTCGAAAAATAC 1567 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 1633 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 1699 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 1765 36 100.0 30 .................................... GCTCAGTTGGAACAATGAATACATCTTGAA 1831 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 1897 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 1963 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 2029 35 83.3 0 ...........................C-T.GG.T. | ========== ====== ====== ====== ==================================== ========================================== ================== 23 36 99.2 31 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : CGGATTTCAAGTGCAACACTAGTGTATTAGTGGTTGGAACAGATTCAAGAATAAAACACTTGGCGTTTCGTAGCCAAGTGTTTTTCTTGGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 207-636 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDVQ01000035.1 Neisseria meningitidis strain N753_00 NODE_35_length_23754_cov_64.588_ID_69, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 207 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 273 36 100.0 30 .................................... ATAAATTTGTGTCTGCGTTATTCATTTTAG 339 36 100.0 28 .................................... ATAAAAAATCGAAAAATCAAAATACTAG 403 36 100.0 30 .................................... CGAAGCAGGAAGACGAAATCAAACGGCACG 469 36 100.0 30 .................................... CATGGCGGTCGTCATATGGGGGTTCCTTCG 535 36 100.0 30 .................................... AGGCACTCGGCGGCGGATTGAAACGGGATA 601 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : TTTCGGTGACGGTGCAGTGGCGGGACAGGTATTGGATGTGGTATCGTTCGCCTTGGGTCAGTTGCGTGTAGCTCATGGCAATCTTTCTTGCAGGAAAGGTCGTATGCTACCGCATACTGGCCTTTTTCTGTTAGGGAAAGTTGCACTTCAAATGCGAATCCGCCCAGTGCTACAATACTTAATTTATTCAGTTCTTCTTTATGCCAG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //