Array 1 8278-13366 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNLT01000203.1 Xanthomonas oryzae pv. oryzae strain JL3 scaffold202, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 8278 31 100.0 34 ............................... AGGTGTTGCGCGCTGTCAAAGCGTCTGCACGCGG 8343 31 100.0 36 ............................... TGTTGGTGACGCGCCACCTTCCACGCCCGGTGATGG 8410 31 100.0 35 ............................... AAATGATTGAGCATCAAACATCTATGTTTGATAGG 8476 31 100.0 37 ............................... GCCGTCACCTTTGGTGTAGCTATGCGGTGAAACGACG 8544 31 100.0 35 ............................... ATGATCGAACGGCCTACCGGCGCGCCCTCGCCTAC 8610 31 100.0 34 ............................... CTCAGGGCTATCGCCTGTCAGGTGCAATCAAAAC 8675 31 100.0 35 ............................... TCAGACACGGACACAGAGTCATTGAACGTCATGTA 8741 31 100.0 34 ............................... TCCCAGCACGCCTTAACCGCATGGTCTTTGCAGC 8806 31 100.0 35 ............................... GGGGTTCCTCGGCAAGGTCGGCAGCTGGATCGGCG 8872 31 100.0 34 ............................... CACACGAGCGCGTCGAAGGCGGCGTTGTGCGCGA 8937 31 100.0 34 ............................... GAGGACCGGCGTGCAGCATCGGTCAACATTGGCG 9002 31 100.0 35 ............................... TCGATCCGGCCGTCGGCGACATCGGCTTGGCGACC 9068 31 100.0 34 ............................... TTTGCAAATGAATCATATTGATCATCAGTCAGGA 9133 31 100.0 34 ............................... ATCTACAAATACCGGAAGGAAAAGAAACGTGTCC 9198 31 100.0 34 ............................... GTGTCCCACTGCGCCGACCACTTCGCGCCGCCGC 9263 31 100.0 35 ............................... TATTCCGCCCGACCAATCGATCCGGAGGTTCGGAA 9329 31 100.0 35 ............................... TTGGCCTACCAGGCTGCGGCGAAGTGGCCGCTGAG 9395 31 100.0 36 ............................... CAGAGCCTACGGGGCTGGGGCAGCATCAATTGCAGC 9462 31 100.0 33 ............................... TGCTGTCAGATCCGCAGTTACTGTATAGACCTG 9526 31 100.0 35 ............................... CGTCAGCATCTGTGACAGTAGCAATGACATCCCAG 9592 31 100.0 34 ............................... CCTCACCCCGCCGGATGCACGTCTGACCGTCCGT 9657 31 100.0 35 ............................... CTCTGGGAGACGGCGGATATGGAGATGTGGGAAAG 9723 31 100.0 34 ............................... CCTTTCAACTGGGCAAGTCCTAAGCAGAGGTCAG 9788 31 100.0 36 ............................... TCCGGGTTCAAGAGTTTGTCTACAAGTACCGGAAGG 9855 31 100.0 34 ............................... CGTATCAGCCTGGTGATTACGAGCTTGATATTGA 9920 31 100.0 34 ............................... AGTAGCCAGTGAAGTCTCCCAGATGATCCCACAA 9985 31 100.0 34 ............................... CGATGATGTTGTACAAGAATGGAATATCCTTAGC 10050 31 100.0 33 ............................... ATACCACATGAGTCTGTATTAGATGCAATGGAG 10114 31 100.0 34 ............................... GCGTGCACGCAGGATGAGTCGGGTAAGTGGTGTA 10179 31 100.0 35 ............................... TCGCAACGCCCGCCGCTGGTACTTCGGTCAATCTT 10245 31 100.0 35 ............................... GTGCACTACTTCACCAAAGATCGCGCCGACCCCAA 10311 31 100.0 36 ............................... AATGACAGCGCATCTGTGGCGGAGAATGCCCCTATG 10378 31 100.0 37 ............................... AAGCTTGATCTTATTGGCATACACCCACCGCGGGAAC 10446 31 100.0 34 ............................... GCTACCACCTGAACGGCGCTCGCCGCCGCCGACC 10511 31 100.0 35 ............................... TTGTGGGACACGGCAGATATGGAGATGTGGGAAAG 10577 31 100.0 34 ............................... AGAACATGAGTGTCCAAACGCCTGACGCGCAGAC 10642 31 100.0 34 ............................... GCTACCACCTGAACGGCGCTCGCCGCCGCCGACC 10707 31 100.0 34 ............................... CCCTTGGTGCCTATTGTGCCTAAATCTAGGCACA 10772 31 100.0 36 ............................... CACACCGACGGCGGCGGCGTGCGTACGTTGCGCCTC 10839 31 100.0 35 ............................... GGCACGGGGACATCGGCGGTGCCGTCAGACGCTAG 10905 31 100.0 36 ............................... AACGCGTTGTAAGCCTCGTGCCCGTGCTGCGTGATG 10972 31 100.0 35 ............................... CGGCAATCGACGGCGATCTAGGCCCCGACGATTTA 11038 31 100.0 36 ............................... TTGACGGTGACGGTGTACGCGCCACCGGTGTTATTG 11105 31 100.0 37 ............................... AGCGACGCAATTGCACTACTGCTCGAAGAAGGCTGTA 11173 31 100.0 34 ............................... GCCAAGGGCTGGACGAACCGGCGGATTCTGGCGG 11238 31 100.0 34 ............................... TGGCTCCGTTGGGTGGTTGGTAAAGCCATCGGAG 11303 31 100.0 34 ............................... CAATGGTTAGTGCACCTGGTCCTCGGCAACGCTC 11368 31 100.0 34 ............................... GCGCAAAACGATAGCGCCAAGGTCGAAATCCCGG 11433 31 100.0 35 ............................... GCTGCTCGCCGAAAGCAAGCGTCGCTAATAGGAAC 11499 31 100.0 34 ............................... GTTCGTACGCGCCACGGCGTTCGGAACAAACTCT 11564 31 100.0 35 ............................... TTCGGCTAATGGTGGTGAGGGCAGGGCGGCGCTTC 11630 31 100.0 35 ............................... GAGGCGCAATTCGACAATGGGCGTATGCAGGACTG 11696 31 100.0 35 ............................... GACAACTCCACCACGATCACTGGACAAGCCGGCCG 11762 31 100.0 35 ............................... GACAACTCCACCACGATCACTGGACAAGCCGGCCG 11828 31 100.0 34 ............................... GCGCTTGCCCAAGCCTGACATTTCGCACAACTCC 11893 31 100.0 34 ............................... CACGCGCTATAGCGGCCGTAGTTGCTACGTCCGG 11958 31 100.0 35 ............................... GTGCACTACTTCACCAAAGATCGCGCCGACCCCAA 12024 31 100.0 34 ............................... CTGGCGCAGCACGCACGGTGGACAAGAGGTGGGC 12089 31 100.0 36 ............................... TCTTGCCCGTAGTGGCGGTCTGGAAGGTGCTCTAAG 12156 31 100.0 35 ............................... ATTTCATGAGCGCGCATGCGCAGATCAGCAAGCAA 12222 31 100.0 36 ............................... GTGATGGTGCTGGAACAGGCGTTGTCGGCTGTGCTG 12289 31 100.0 33 ............................... GCCATCGATGCAGCAGGCCAGGACGTAGCGCCG 12353 31 100.0 34 ............................... GCGCGGAGTATCGGCGCAGTACACACCGCTCCCG 12418 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 12484 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 12550 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 12615 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 12680 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 12746 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 12812 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 12876 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 12943 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 13008 31 100.0 35 ............................... TTTGCGACGGTGTTCAACGGCGAGCAGATTGACGG 13074 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 13139 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 13206 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 13271 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCAGCGCAGGCTGGCC 13336 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 78 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGGG # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //