Array 1 6513-5874 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSBE01000011.1 Lentilactobacillus parabuchneri strain FAM21835 FAM21835_scf_0011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6512 29 96.6 32 ............................A GTTGAAAAAAGGTTGACCTATCAGCAATCGCT 6451 29 100.0 32 ............................. GGAATTTGCCAATAAGACCGGAATAGCTTTCC 6390 29 100.0 32 ............................. GACGCAATCAACTCGACACTGTCCGACAAGAA 6329 29 96.6 32 ............................T GGTAATTCGTTGGTATCATATCCCACGTTTTG 6268 29 100.0 32 ............................. TGTAAGTAGTGAATCGAAGTGCTACATAATCA 6207 29 100.0 32 ............................. GTGCCGACCACCTCGCCGTTGACTGTGACTTC 6146 29 93.1 32 ......................G.....T CTTGGACAATGACTTGATGCCTGCTTCCATAG 6085 29 100.0 32 ............................. TTGTGATTCAAAATTCTTCTTTTGCTGTCTGT 6024 29 96.6 32 ............................T AATAAATGGCAATCAGCGCAAGTTGGAAAGAT 5963 29 93.1 32 ............GG............... ATGAGCTACGACTTCAATGGTTACTACACAAA 5902 29 86.2 0 ..........T.G........A.G..... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 96.6 32 GTATTCCCCACGCATGTGGGGGTAATCCC # Left flank : GTCAAAGATAAAATCATCTCGATTGGTGCTGTCAAACAAGCTCGAACAGGTAATTATACTGACTTCTATCAGCTGGTGAAAGTTGATTCTGATATCCCGGAGAAGATCACTAAGCTGACAGGTATCACAAGTTATCAAGTGCAGACCGACGGAGTTAAATTAGAGAACGCATTGAATTCCCTGAAGGATTTTGTTGGTGATTTGCCAATCGTTGGCTATAATTTGCATTTTGATCAAGCATTTCTTTCCGCCGGGTTTCGAAAAATTCAGCAAACAGATTTAGAGAATCAGCTGATCGATTTAATGCCAATTGTCAAAAAGACCGACCAATTCCTGGATAACTATCGGTTAGAAACAGTATTGGAAAAGTATGGTGTTGCCAATGCTGCGCCACACAATTCATTATCTGATGCCAAAGCAACACTTGGACTAGCAAATAAACTAATGGAAAACGGCCATTTGGAAATTTAAGAATGCCGTCATATCAGGGATTGTTTAGT # Right flank : AGTGCGGGATGACTTTTTTGTCAGTGAGGAGTATTCCCTACATGTGTCGGGGCAGAAAAGAAGAAATGACCTTTTCTGATAAATGCTATAATAAACGGGAAAATAACTGGTTGGAGGCAGCACAATGGAATTATATGGTGGGAAGCATATTACAATCACCGCAAAAGCAGAACGAACAACGAAACGTGACCGAATTGAGTTCATTGCAGGTCTAATTTTGATAGTTGTTGCGATTATGGCGGTGAAAACATGGTAGCGTACACCGAAGCACGTAAGCGGGCAACAAAGAAATACAGGGAGAAGCATAAGGAACGTACTAACTACCTAAACAAGCGCACGATTGCCAAAACGTTCGTTACAAAATATGGAACCATTGAGGATGTAAAAGCGTTGCAAACAATGATTGATGAAAGATTGCAACAAGAAAATGAATAAGGCCACTGGTTACAGTGGGGTTCAGAAGCTTTTGTTAGGAGCAAAAACTGAGACGCCTTTTCCAA # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTAATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 20022-19809 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSBE01000011.1 Lentilactobacillus parabuchneri strain FAM21835 FAM21835_scf_0011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 20021 29 93.1 32 ............T...............T TCTCGGAGCTTAGTTGAATCCGTAAACTCAAG 19960 29 93.1 32 .............A..............T ATTGGCGATGTAATTGCAGTGTGGTACGAAGA 19899 29 100.0 33 ............................. GGTGATCGGTACGTGAACCCCAAGGCGCAGAAG 19837 29 86.2 0 .............A..C.....C....A. | ========== ====== ====== ====== ============================= ================================= ================== 4 29 93.1 33 GTATTCCCCACGCGTGTGGGGGTAATCCC # Left flank : TGATTTGTGAAAACGATGATATGGCACTGGGGGCACTGAATGCCTGTATTGAATTGGGCTATCAGGTTCCGCGTGATATTTCGATTATTGGGTTCGATGATATGGCCTACTCCAAATACTTGGTTCCACCTCTGACAACCGTCCGCAAGCCAACGCCAACCATTATCAGCATGGGTGTCTCCCAGTTGATGGCAATCGTTGAGAATGGCCAGCAGGATGACATCGAGCAAAAAGTGGTTGATCCCGAGATTATTGTGCGTAGTTCGGTGTTGAATATTAGTGCGGGTGAGTGAATGAATTGATTATGGATCTTTCTTCATAAATTATTGGTCATTGTGGTGACTGGCAATTTTGGAGAGAGGTCTTTTTTGTGAGATTTAAGGTTTAGTTTATAGTAAACTGTTAGTGTACTCGTGGTACATTTTGGGCGGGAGTAAAGAACTAATTGAAAATGGGTATTTTCAATTTTCATAATGCCTATGTAGCGGTGTTTGTTTAGT # Right flank : ACGTTGATATTATTAAAATATTGTATAGCGCAAAGGGATGCGTTTAAAAAGGCTAAATTTAAAGTTCATACAAATGGCTGGAAAGAAACACATTATGTATAATTAACGGTATTTACAGGGATTTTAGATAGTTGTTTAAGAAGGGATACCAGTTGTTATGAAAAAAGTACTCCATATCTCAAAAAGTCGTCCAGGACTCTGGCAAGATACCGATGTGACTTACGCACAGGTGCCAGGTTGGTTGGGACATACTACGATGGATTTAAAATTAACAGTTTTACGACAGTTTGAAGGACAACCACAGCCGCTGCCAGTTATTTTTTGGTTTGGTGGCGGCGGGTGGATGACTGTTGATCATAACGTTCATTTGCCGAATCTGGTTGATCTTGTTCGAGCAGGATTTGTTGTCGTCAGCGTTGAGTATCGTAATAGCAACCAAGCGCAATGGCCAGCTCAGTTGATTGACGCGAAGGCGGCTATTCGCTATATCAAGGCCAATG # Questionable array : NO Score: 3.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCGTGTGGGGGTAATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 32144-31688 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSBE01000011.1 Lentilactobacillus parabuchneri strain FAM21835 FAM21835_scf_0011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32143 29 86.2 32 TCCC......................... GAACCCCTCCACACTGCTAAAGACGAAAACGA 32082 29 100.0 32 ............................. TCTCCTTCACGCCATACCAAGTGTTTGGGTCT 32021 29 96.6 32 ............................T TTGATATGCTTTCAATTTAGAAGCGTTCGGCA 31960 29 96.6 32 ............................T CCGATCGATGCCGGCTTGAAGGAACTTGAAGA 31899 29 100.0 32 ............................. GACAACTAACGCAATATAAATCGGAATATCCT 31838 29 100.0 32 ............................. AGGTCAAATCGATTTCGGACACAGAGCTTAGA 31777 29 93.1 32 .....T.................G..... CAATAGCCGCCTTGGTATCCGCGAATGACTTT 31716 29 72.4 0 .....T...G...C......A..G..TTT | ========== ====== ====== ====== ============================= ================================ ================== 8 29 93.1 32 GTATTCCCCACGCATGTGGGGGTAATCCC # Left flank : GGCCAAATCGGCGGCTACTCTGGCGATGTTTGGTACCCACAGCCAGCACCAAAGGATCACCCATGGCGAACAATGCCAAACGAAGCGATGACCCCACATATGTCCGGAACCACATTGTCAGCCCAAGCTCGATACGCAGCCGGCACCCGTGAAATTCTCGAAGATTTCTTGGAGGACAAACCAATCCGTCCTGAGTACTTAATTGCTCAAGGTGGCAGTTTGGCCGGTACTGGTGCCAAGTCTTACACCGTTAAGAAGGGTGAGGAGACACCAGGTAGCGGCGAGGATGAGAAGTAGGAATTCTTAAAATGAAAAAATGCGGTCTGGGAGAAGTTCTTACGGACCGTATTTTTTGTGTTTGTGTAGTGGTATTTATGAATTCTTTTATAGTAAACTGTTAGTAGGATCGTTAGAAAAAAGGTAGACCAAAATAAAAACTAATGAAAAACGAGCATTTTCTAATTTGAGAATGGCTATGTATCAGGGTTTGTTTAGTGTAT # Right flank : GCCCTCATAAGCTGGTAGCAGGCTATTCGCGTAAAGATTCATTGCTGATCGACAAAAAATCGTGATCCTGGGGGAATTTACTTCTCCTTCGAATCACGATTTTTTGTAAGTATTGAGCTGGAGTTATCCTTCAGCGTCATGAATCGCATCGGCAATATTATCAGCCGAAAAATCATGGTTCATGTATGCGTCATTACTAACCGGTAAATGTTGTTCCAGTGTATCAAACAACTGATAGGAAACGGTGCCTTTGTCTAAATGAAATGCCAACACATGGCCGCCAAACTTATGATCATCTGATAAAAAGTGGTGGTGGAAACCCGCGACCGCAGCCCCGTCAAATAATTCCGGAGAATAGTAACTAATCATTGTTCCATTCACCTGATTACGGGTAAAGATGCTTTGGGTACGCGCGGTTTCGGCTAGTGTCTGAAAAGGTGGCACGGATTTCTTAACCGCCCGAGTTTTTATTCCGGAGAAAGTGCCAGTAATTTTGATGG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTAATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //