Array 1 99979-100736 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZFU01000003.1 Staphylococcus simulans strain SNUC 4566 contig003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 99979 36 100.0 30 .................................... GAAATTTCCTGCCGATACTTTACCGTAATA 100045 36 100.0 30 .................................... TTATGGCGTTTTGTGAAACAGTGCCGAATG 100111 36 100.0 30 .................................... AAACCTAATTCTTTTCTGTACTCATCAGCT 100177 36 100.0 29 .................................... ACATTATCGCAGTATGTTAGCTGACGAGC 100242 36 100.0 30 .................................... GTGAGTGTACACAAAGATGAAGATGACATT 100308 36 100.0 29 .................................... AATATAACAACGTGGTTATAAGATCGGCA 100373 36 100.0 29 .................................... CCTGCGAAATATTGATAACCACGTCACAA 100438 36 100.0 30 .................................... GCGTGGTAAGTGTCGACTATCGACCTAACG 100504 36 100.0 30 .................................... TTTTCTATTTGCCGCTGCCCTTTTCTTATC 100570 36 100.0 29 .................................... AGGCGTGTTTGAATACGACGATCCGAGAA 100635 36 100.0 30 .................................... AAGTTCTTGCATTATGTTCAGAACATCATA 100701 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 100.0 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC # Left flank : ATTATCAAGCAAAAGAAAAGGCGTTTTTGATTTATCTGTATCCAGAAGCGGGTTTAAGTATAAAAGAGCAAATTAGATTTAGAAAAACATTAAATGATCTGCCAATTCCAATAATAGTATTAACAGAGTCCTCATATTTTTTATCAGAGAATATCAAAGGTTTGAACTACTTTATCAACAATATCCAAATGATTACTGAAGAGTTTATTGATGATAGTTACTGGAATGCGCCAATTAATATAGAAATAGAAAAGTTTAAAGAGAGATTTGAGTATTTGTTTAAAAAATATTGTTCTTTTCTAGAAGTTAATCCTACAATTTCTAATTATAATTTGACGGAAATTGTTGTTTTCGATGATTTGGATCTTTATATAGTCATAGCTTTTTTAAAACATTGCAAATTTAACTATCAACTAGACATTGATAGGGAGAAAATTTCTTCAGCATTATCAGTGTATCTATTTTCTTAACCATAATTCAAGTTTATAATTGTGCTAGAG # Right flank : CACTAACCCAAAAGGAACTTGAACTGCACCTGTTTTAGTACTCTGTAATTTTTAAGCAGCTTCGGCTGCTTTTTTCTATTTTCTGTCATTGACATACTTTAATGATAGGCATACAATAATTCTGAAAATTACGAAAACATCAGGTCTTTTGCATCACGAGAGGAGTCTTTTTATGGAACACACAGCGATGGATCATACTTCACCCACACATCCAGGGACTAAGATAGGTCCCAAATATTTTCTTTTTAACTTATTAAATGGGGTTGCGATTGGTATCGTAGCAGGTTTAATCCCGAATGCGATTTTAGGAGAAATTTTAAAAGCACTTGTCCCATTCAATCCAGTCTTTACACAATTACTACACATTACGACGGCTATTCAATTTGCGGTGCCTTGTTTAATCGGTGCGTTAGTTGCGTATCGTTTTAAATTTACACCTTTAGGTATCGCGGTAGTTTCAGCGGCTTCCTTTATCGGTAGTGGTGCTGTCGTCTTTAAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 16182-15178 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZFU01000031.1 Staphylococcus simulans strain SNUC 4566 contig031, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 16181 36 100.0 30 .................................... ACTGGAAGTATTGAAGATGCAGCTCAAGGT 16115 36 100.0 29 .................................... TGTTTAATAAATAATAAAACGACGATTAA 16050 36 100.0 30 .................................... GCAGCAAGACAAGCAATGACGAAACATCAG 15984 36 100.0 30 .................................... TTATTGTAATGATGAAATTGAATCAGTTGT 15918 36 100.0 30 .................................... GTTGGAGGAAGTCGGAAAAATTGTTGGTGT 15852 36 100.0 30 .................................... CAAAGCAAGAATTAAAGGAGAAAAACATCA 15786 36 100.0 29 .................................... AAACGTTATCAACACATTCGTAGGGTTTT 15721 36 100.0 30 .................................... AAAAGAAAACGGCAATGCTGGCGTTGTGGG 15655 36 100.0 30 .................................... TGAGATGATTTGAGAACCATTTAAGCCTTT 15589 36 100.0 15 .................................... TTTAATAACTATCGT Deletion [15539] 15538 36 100.0 29 .................................... CTTTACGTGCTTTTCTCCACGCACACATC 15473 36 100.0 29 .................................... ACCACAATTTCTAGTGTATATACGCCTTT 15408 36 97.2 29 ......................T............. TGCATTAGCAATGTTTGGTGGTTCATTAA 15343 36 100.0 29 .................................... CGCAAAAAAACCATGCGTTGACGACCGCA 15278 36 100.0 29 .................................... TATCCAAATCATAGCTACATGCTCTTAAA 15213 36 88.9 0 ............................TT....CA | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 99.1 29 GTTTTAGAATTGTGATCTTTTAGAATGAAGTAAAAC # Left flank : AATATTGTTTTGAAAAAGTTGCTTGGCATGTTTAAACCAGACTTTCATAATGATTTAGAAGATTTAAATGCGATAGAGCAACGCAAGTTATTTATAGACACATTAACATCAACAGAAAAAGAAAATGTGTTGGTTTTGTTATTTCCTGAAGCTCATTTAGGGCTTTCGGATATGAAGGCATTTAAAAAATATCTGCAGACTCTAAATATGTTTAGTATTATTGTTACGAGTCATCCTTATTTTATTATCGAGTCAGATACATTAGCGCTTATTAAAATGAATGGAGAACCGGTAAATACTAAACAAATAAGAGAAGAGTTATTGTTGTTTAAAGAAAAAGAAAAAATAACTGATTTGGATAAGACAAGCAAAATGATAGCTTATCATGAATTTTGCCAACATCCATATCTTGATGATGAGTTCTTCATTCAATTTATGAACAAATATTAGTTTACTGTCATTATAAAGGTCTCTAAAACCTTGATTTCTCGTTGTTTAAG # Right flank : AGCGGGTATAACTTAACTATTTATCGTGCTTGTTTGAATGGAAAAATCTTTATATTTGTTTTGGAAATGTCTTTGACTTTTCATCTATCTGTGTTAAACTTAGTACAGTTTAATAAAGAAATCGTAAGTCTTTAATTGAGAGTACAGAGATGCTCCGAAGGCAGATAATTTACATGTTGAAACTAGAGAAAGTAACTAAGTAAACACTTTATTAAGAGGTAATTTTGTATGAACACGCAATTCACCAACCCTGATTGCCATACAAATTTAGTAAAGTAACCGACAAAACAGTTACTGATTTAAATAGTTGAGATAGTAAATCTCGCATGTTCTTCGTGTCCCGTGTCTCTCAATTGAGATACGGGATTTTTTTATGGAAAGGTGAGTGCGGGAATGACAGAACGTATTGTATTAGATGATGCAGGCATGCAGCGGACTTTAACACGTATCGCACATGAAATTCTAGAGTATAACAAAGGTACTGAAAATCTTGTGTTGCT # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAATTGTGATCTTTTAGAATGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //