Array 1 3205041-3202078 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038608.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CFIAFB20170121 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3205040 29 100.0 32 ............................. TGAATACCATTTTCCCGACAGAATAATTTAAA 3204979 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 3204918 29 100.0 32 ............................. ATCTAGGAATTAATAACAATCAGTTACTATCA 3204857 29 100.0 32 ............................. GTTGCAAAGATATCGACGTTCAGGAGCCTGTC 3204796 29 100.0 32 ............................. TATTACCCTTTCAGAATCTTTTTTGGATTGCT 3204735 29 100.0 32 ............................. CTATCAACTGTAATACCTTTACTTTCGAGGAA 3204674 29 100.0 33 ............................. GGCAAAGACGCGATCCTATCAACACTGCCCGCC 3204612 29 100.0 33 ............................. TTACCCCGGCTCAAAAAGACATTCATAACGCGC 3204550 29 100.0 32 ............................. CTCGCTAACTCCCTTAAAAGGGATATAATAAA 3204489 29 100.0 32 ............................. TACTGGACATGAATAAGCGGTTAGATGAGGAA 3204428 29 100.0 32 ............................. GTGATATTATTAACCTGTGAACTATCTACCTA 3204367 29 100.0 32 ............................. GCCACCAGCACGACAAACAGCAACGCACGATT 3204306 29 100.0 32 ............................. AGACCGCGAGCAGATAACGCAGCTGGAGGCAC 3204245 29 100.0 32 ............................. GGGACGAGAAACGCCACTTTTATACCAAAAGG 3204184 29 100.0 32 ............................. GAATTTAACCATCGTATTTGCAGTTATTGTTT 3204123 29 100.0 33 ............................. GCAACTTTTCAGCCTGTTTATTAACTGCTCTAC 3204061 29 100.0 32 ............................. CATGGCGGCGCGGCTGGCATCTTCATTCTCGC 3204000 29 100.0 32 ............................. TTGACATTGTTGCTGATGGCGCAGTTATGCCC 3203939 29 100.0 32 ............................. GTTATCAGATCGTTCAGCATTGGCGCTTTGCC 3203878 29 100.0 32 ............................. CTCTGATTCAGTCCAGTAGAGATGCCATGTGT 3203817 29 100.0 32 ............................. ACACCGTACTGAGTCTGAATGATGTGATTGGC 3203756 29 100.0 32 ............................. GTGGTCCTCAAGTGAGTCTTTGGAAAAACCCA 3203695 29 100.0 32 ............................. CCAGTGCTCACTTGCTTCTACCCGCCCCGATC 3203634 29 100.0 33 ............................. CTGGCACGCGTCTGCGATTTGCCGTAGTTCTAC 3203572 29 100.0 32 ............................. GCACGTTTGCTGGGGCTGGAAGAAGGTGTTCA 3203511 29 100.0 32 ............................. GATACCACCGAGCCTGAAGTGGCAAAAAGACA 3203450 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 3203389 29 100.0 32 ............................. AGCTTATTCAGATGGGGCATTTATCGCCTTAT 3203328 29 100.0 32 ............................. ATAACAGCACTGGCTTCGTTACTTTTGCCAGC 3203267 29 100.0 32 ............................. TGATCTGGCTGAGTTCTCCAGTGACGACAAAA 3203206 29 100.0 32 ............................. AAAAGAGCCAATACTCCCCAGTAAACCGCCAG 3203145 29 100.0 32 ............................. TCGATCCTGACAGCCTGATGGCCCGCCGCGAA 3203084 29 100.0 32 ............................. GGGAAAACCCAAAAAACGCGTTAAATCTTTTG 3203023 29 100.0 32 ............................. AATTTAACGGCGATCAGGTTCGCATGCTGAAT 3202962 29 100.0 32 ............................. ATTTACGTTTATTCAGTTCAGGCTAACGGCTC 3202901 29 100.0 32 ............................. CAGATTGACATTAACGCCACGATAATCGAACG 3202840 29 100.0 32 ............................. AAAGCGCAGATCAGGCTAACTCAATCAAATCG 3202779 29 100.0 32 ............................. AATTTGGATCGCCCTGAGTTTAGGCGCATGGT 3202718 29 100.0 32 ............................. TTGAATGTCCAGAGTGTGGCAATCACTTTACA 3202657 29 100.0 32 ............................. CGTGTTCACCGCTGCGCCCGGTTATATCCCGT 3202596 29 100.0 32 ............................. CGATATTGACGATGTATGACCGGAAAACCTCG 3202535 29 100.0 32 ............................. GTGGCAAACGAACAGGGATTTGTCGGCAGTTA 3202474 29 100.0 32 ............................. CCAGCCCTCCGGGGCTGGTTACTCGCAGAGCA 3202413 29 100.0 32 ............................. CCTGCTGGCTGATGTTAAACGTAAAACCAGTG 3202352 29 100.0 32 ............................. CATTGCTGCCAGCCAGAAGCGCCCTTCACTCA 3202291 29 100.0 32 ............................. GCTACGGTAAACGTGAATGTGCGTATTGACGC 3202230 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 3202168 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3202107 29 96.6 0 A............................ | A [3202080] ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3222717-3221712 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038608.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CFIAFB20170121 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3222716 29 100.0 32 ............................. CGAGCCCAAATAAGCCGCCAGGCGTCGCGAGA 3222655 29 100.0 32 ............................. TTGAATGCCCAGAGTGTGGCAATCACTTTACA 3222594 29 100.0 32 ............................. GGGGCGTCTGAAATTGAGGCTCTTTACGCTCG 3222533 29 100.0 32 ............................. AGGAAAATCATTTTGCAATGATGAGCTATAAC 3222472 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 3222411 29 100.0 32 ............................. AACTTAGCACCCTAATTAGCTGATTGATGCGA 3222350 29 100.0 32 ............................. CCTTCTCCCGGTTAGCCTGGGTTTTGCTGCGC 3222289 29 100.0 32 ............................. AAACCCCGGAAATGCAGGAGCGCGTTAAGGCG 3222228 29 100.0 32 ............................. GGCCGCGTATTCTTCATCAGTGATGTACCGTT 3222167 29 100.0 32 ............................. GGCCGCGTATTCTTCATCAGTGATGTACCGTT 3222106 29 100.0 33 ............................. GGGATCGGCAAACTTGCTTTAACGCCGGACAAC 3222044 29 100.0 32 ............................. CATTGAATCATATGGGACTCCGCACGTCGCGC 3221983 29 100.0 32 ............................. CAGGAGGCGGATCAATGAGCTACATCGACAAA 3221922 29 96.6 32 ............................A TAAATCGCTTTACCGAAGCGTCGGGTTAACTC 3221861 29 100.0 32 ............................. CGTCCCGGTAAATCTTTCTACGCGCCTGATTG 3221800 29 100.0 32 ............................. TCCGGGAGCGTGATTACCTGCCCAGCGGGAAA 3221739 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //