Array 1 3783-4170 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCYS01000153.1 Pseudomonas aeruginosa strain 98 scaffold_152, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3783 28 100.0 32 ............................ TGGACCTTCGCGCCGGACTGGGGCGACAGCAT 3843 28 100.0 32 ............................ TTGCAAATCCTGGGCTGCCATCGAGCCAGAGG 3903 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 3963 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 4023 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 4083 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 4143 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 95.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGGTGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGTTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1589-299 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCYS01000865.1 Pseudomonas aeruginosa strain 98 scaffold_864, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1588 28 100.0 32 ............................ TGCTGTTGCGTCAAGCCTCGGGCGGCCCGAAA 1528 28 100.0 32 ............................ ATCTGCGCAATGGTCTTTCGAAGATGGGCGAC 1468 28 100.0 32 ............................ ACCTGGGGTGCCTTGCCCGCCTGCCGCTGACG 1408 28 100.0 32 ............................ TTGGACGGCCACGCATCAGCCTTGCCCAGGCC 1348 28 100.0 32 ............................ TTTGCATGCTCGCACTACGGCAGGCACACGCT 1288 28 100.0 32 ............................ TTGATGGCGTCGGTAAAGCCGCTGGTGAGCCC 1228 28 100.0 32 ............................ TGCCGGTAGCAGGGCATCAACAGACCAAACAC 1168 28 100.0 32 ............................ GTCGACGTCGATGAACGCCGCGCACGGATGGA 1108 28 100.0 32 ............................ TTGCTAAGCATCCACTGTGCCGCTCCTGTAGC 1048 28 100.0 33 ............................ ACGTATCAGGCATCGTACTCGGCAAGGTGTTCT 987 28 100.0 32 ............................ ACATGGGAATGCTCTCCTGGCACGAAGAAACG 927 28 100.0 32 ............................ GCCCGCTGGGGAAGCCGCAGTTATCCGGAGTA 867 28 100.0 32 ............................ AGGTTGACCAGCATGGCCGGCATCGACAGCGT 807 28 100.0 32 ............................ TGGGCCGGCGCCTACGCGGCGCATCAGCCGGT 747 28 100.0 33 ............................ ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 686 28 100.0 32 ............................ TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 626 28 96.4 32 .............T.............. ATACTGACTCAGCCAGGGAAAAGTCACTTGGA 566 28 96.4 32 .............T.............. AGCGTGCCATGGCGGCGGTAAGTCAAACCGTT 506 28 96.4 32 .............T.............. TGGTCGAACAGATGGCGGTCCTCGGCCAACTG 446 28 96.4 32 .............T.............. ACGTCGGAACGCAACTACCTGACCGCGTTGGT 386 28 96.4 32 .............T.............. ATCAGGTACAGCACCAGGGCACCGAAGACGTT 326 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.0 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Left flank : TCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : ACGCAACGTTCGTGATCTGCCGTTCGCCGCCCAGTTCACTGCCGTATAGGCAGCTAAMAAATCGGCGAGGCGATCGATCATGCGAATCAGCAAGTTCACTGCCGTATAGGCAGCTAAGAAAATCGACCACGACAGTGCTTCCCTGGTCTATTCGTTCACTGCCGTATAGGCAGCTAAGAAAATTGGCCGTGCAAGGTCCACCAGTCGATGCTTGTTCACTGCCGTATAGGCAGCTAAGAAACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 905-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCYS01000348.1 Pseudomonas aeruginosa strain 98 scaffold_347, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 904 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGACCCAGGCC 844 28 100.0 32 ............................ TGGCCGGTCTTTGCGTATTCGTCGGCTTGGCT 784 28 100.0 32 ............................ TAAAGCACCATAGTGAGGGTACATAGAGAAGA 724 28 100.0 32 ............................ TCTACCTCGGTGCTCTTCCCTTCTGCCGGCTC 664 28 100.0 32 ............................ CGCCAAYAGCGATCCGATGCCATGCGCGTCAA 604 28 100.0 32 ............................ AAGTACGCTTTGCCTTGGCAATCGCTTCCGTG 544 28 100.0 32 ............................ TGATAGGCGCTCAAGCGAAGCCCCTCGAACTC 484 28 100.0 32 ............................ TGAGCCAGGCCCTGAACATCGCCATCGGCGTG 424 28 100.0 32 ............................ TGCCCGACGTGCTAGTAAGGCTCACTAGCTGG 364 28 100.0 32 ............................ AATGACCTGGCCGACATGGTGGCGGCTGGTGC 304 28 100.0 32 ............................ TTGATGCCGGCATACACAGCGGCCAGCAGCGC 244 28 100.0 32 ............................ TATCCGCACGAACTCCAAGCCACCGGACATTC 184 28 100.0 32 ............................ ACCCGTAAGACCCGAGCCGCCACCAGTACCAC 124 28 100.0 32 ............................ ATCAGCCACGCCTTCACCGGTAAGCCCGGCCG 64 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 15 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCRTGAGGTCGGCYATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGRMGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCATCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : AAAAAATAATCGAACGCATCTTGCACCCACTTAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //