Array 1 205042-205802 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLYS01000002.1 Pasteurella multocida strain BAUTB2 NODE_2_length_342429_cov_444.714338, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 205042 36 80.6 30 ...A.TT..GTGG....................... ATACATGCTAATCAATTTGATAAGGCTGGA 205108 36 100.0 30 .................................... GGTAGATAAAAGTTAAATTCATTGAGTTTA 205174 36 100.0 30 .................................... TTTGCTTTCTTCGCAAATAACGCTTTGACT 205240 36 100.0 30 .................................... ACCAAGAGTTAACTTATAGATGACCAAGAG 205306 36 100.0 30 .................................... TCAAGTTGCCAATTACAGGGACCAAAACGG 205372 36 100.0 30 .................................... AATGGCTGTAGTACTTTATACCACCTCAGC 205438 36 100.0 30 .................................... AGGAAGGTAGGCACTTCGATGACCTCAGAG 205504 36 100.0 29 .................................... CAAGATATTGGCGTACGCGAGATTCGGCA 205569 36 100.0 30 .................................... CATTTCGTGAATAAATCTTTAGGTGCAATT 205635 36 100.0 30 .................................... GATAATGAGTCATTAAGGTTGTCTAAATTG 205701 36 100.0 30 .................................... CTCGACGAATTACGTAGTGATAGCCAATAT 205767 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 98.4 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : GATGACCTTAAAAGGTTTACCCCTTGCCTATAATAAAGATATGCAAGAAGACAAAGAAGGGATTTTTGATGCCCTAGATACTTGGCAAGACTGTATCGACATGGCGGCTCTTGTGTTAGACGGCATTCAAGTCAATGTGGAACGTACCAAAGAAGCCGCTTTAAAAGGTTATTCCAATGCCACTGAACTGGCCGACTATTTGGTCGCCAAAGGCGTGCCATTCCGTGACTCTCACCATATTGTGGGCGAAACCGTTGTTTATGCTATCCAACAGCACAAAGCGCTTGAAGCACTCAGCGTTGCTGAATTTAAACAATTTAGTGATGTTGTCGAAGAAGATGTGTATCAGATCCTATCTCTGCAATCTTGTTTAGATAAACGCTGTGCCAAAGGTGGCGTATCACCACTTCGTGTTGCAGAAGCCATCGCTGAAGCGAAAGCAAGGTTGAGTTAATTCTCAAATGAAACGATTTTAATCAGCCACAAAGCGCAATAATACT # Right flank : TCTCGTGTCCCTTATCCCTTATGGCACAAGGGATAAGGGCATTTTTAATGCTCAAAAATTACTTGAATTCTCGATATTAAGCATTCTATTTTTAGAAAATTTTTCTTAAAAAGTCATTGATTTTGTCTGACTGGGATAACATCTGTTGTATGTTACTCCTGGTTCTGAGATGCGCTAGGCTAAAATAGAGAATAGTCTTTTTGTCTATTTTTATAGAATAGGTAAATAGTTTACTTAGAACAGCAACATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTCTCAATCTCCCCAAGAGTATTTTCATTCCTGCAAATTGCTTTTCTGTCACTTCTAAACAGCGTATTGAACCTTCTTCTGGGAGATGATCACTGAGTCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTTG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 51502-50033 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLYS01000011.1 Pasteurella multocida strain BAUTB2 NODE_11_length_67664_cov_426.330226, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 51501 28 100.0 32 ............................ AAATAGGGAATCCGTCTGATGCGGTCCACGCT 51441 28 100.0 32 ............................ GGTATATAGACACGACCCGATTAAACTATTGA 51381 28 100.0 32 ............................ TATTAGGGGTTTAACGTTATCGAATGATTAAT 51321 28 100.0 32 ............................ AAGATGCTCAGCGCTACCTTTAAACGAAATAT 51261 28 100.0 32 ............................ AAAAATATAAACGTTTAAGAGGTCTCTCTTAA 51201 28 100.0 32 ............................ TTAGGCAACATAAAGATAACTTAATGGTCTAA 51141 28 100.0 32 ............................ CATGGGGATTGACGATAGGTGGAACTTTGAGG 51081 28 100.0 32 ............................ GAAAGCCATACGTTTAATCAATGACTCAATCA 51021 28 100.0 32 ............................ ACAATTTACAACAACACAGTTAACAACAACCA 50961 28 100.0 32 ............................ GACAACAAGAGATTGCGTTGTTTAAGAGCTTT 50901 28 100.0 32 ............................ AGTTAACATAAAGATAACTTAAAGAGGCCTAA 50841 28 100.0 32 ............................ ACTTAGACGTTTTACCCCCAGTGTATAAACAT 50781 28 100.0 32 ............................ TCTTGGTTGTTGTAAATTGTGGTTGTTAAGTG 50721 28 100.0 32 ............................ TAATGACCACTAAAAAGGTAATTACCCATCAT 50661 28 100.0 32 ............................ TTTCCACCGACTTCTAAAAGTAAGCGAACTGT 50601 28 100.0 32 ............................ AGACGTGTATTAAACAGATAAAGACTAAGAAA 50541 28 100.0 32 ............................ AATTAATAGGAAAATAAAACATGAAGCAGCAC 50481 28 100.0 32 ............................ TAGCTACTTTCTATTAGTTGTCTTATAGCCAC 50421 28 100.0 32 ............................ ATAATGACCACTAAAAGACAACTATTTATCGA 50361 28 100.0 32 ............................ TTTCCCGCTAATAGGTTTACCGTAAACTAAAT 50301 28 100.0 32 ............................ TTTTATTTTACTACCTTGCACCAAGGTGTCAG 50241 28 100.0 33 ............................ AGTGTAGTGGCCACAACATCTAAACGGCTCATG 50180 28 100.0 32 ............................ ACTACAGGGCACCTGTTAAAAGCTGGAAACAG 50120 28 100.0 32 ............................ TGTTTGGTGGTTAATCATATTGTTTTGGTGTT 50060 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : AATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACTCCGTTGCCTACCGAGTACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGTCGCAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTTCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTAG # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGAGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGTTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 497537-496789 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLYS01000001.1 Pasteurella multocida strain BAUTB2 NODE_1_length_595060_cov_443.633363, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 497536 28 100.0 32 ............................ AAGTTCAAATTAAGTATATGGAAAAGACAAAC 497476 28 100.0 32 ............................ TACTAATCGTCGCTTCGAGATGAGCATTTGGT 497416 28 100.0 32 ............................ AGCTGGAGACCGCACCTTTTACACAACACCTG 497356 28 100.0 32 ............................ AGACGCGATTGTTCGAACAATATGTCGAGAAG 497296 28 100.0 32 ............................ ACGCAGAAGAAGCGGCTACCTTAATCTCTAAA 497236 28 100.0 32 ............................ AACAGAAAGACAACAACGTAGGAGAACATCAA 497176 28 100.0 32 ............................ AGGGACAACCTACCATATCACGCTGGGTCCCC 497116 28 100.0 32 ............................ AAAAGTGGAAGAAAGCAAAATCACAGCGACAC 497056 28 100.0 32 ............................ TAGCTGTTTTGGTTGAGTTTTTTATCGGCTAC 496996 28 100.0 32 ............................ ATAGGGACGCTTGCGGTTTATGGATTTTTTAT 496936 28 100.0 32 ............................ AAGTTGTTATATTAAGCATGAAGAAATGAAAC 496876 28 96.4 32 ............G............... AGTCTGTTATTGATTTTCTCAAGCGTTATTTC C [496866] 496815 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================ ================== 13 28 98.6 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATACAGCGCAGATACCTATTTACACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTCCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACTTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCTCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGGTTTAG # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCGTCAATCTTATCCATACTCTCAGCAACGAGATAATACTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGAGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //