Array 1 44308-48125 **** Predicted by CRISPRDetect 2.4 *** >NZ_SKBM01000036.1 Paracraurococcus sp. NE82 NE82_contig36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 44308 32 100.0 36 ................................ GTCGAATGCACCTATGAGATTTCGTTGCCGGCGGAC 44376 32 100.0 35 ................................ ACCATGAATATATCGCGCACCCACATGGCGGTATC 44443 32 100.0 35 ................................ TTCGGGGGCGGGCTCGGCTGGTGGTGCGACCGCAC 44510 32 100.0 33 ................................ TTCGGCAGCGCCGCGGCGGAGCTGCTGCCGATC 44575 32 100.0 34 ................................ AACGCCATGCGCGACGTCTCCGTCGTCGCCTCGC 44641 32 100.0 34 ................................ TTCCGCCCTTTTCTGTAGCCGCGCCGGAGAACTG 44707 32 100.0 34 ................................ GGCATCCTGGCGCTGGTTCGGCTGCCGTCAGGGG 44773 32 100.0 37 ................................ GCCACCGCCTGGGCCGCCGGCGTCATCGCTGCCCCGG 44842 32 100.0 34 ................................ AGGCGCGGGTCGCGGCCGTCTTCTTCGGCAGCGC 44908 32 100.0 34 ................................ TTCCAGCGCGCCGGCTGGACGCGGGAACAGGCGG 44974 32 100.0 35 ................................ ATTCGCGGCGACGGCGCCTCGGACAGCCCGCGCGG 45041 32 100.0 34 ................................ ATCGGCTATCTGGTCTTGTCGCTCGCCCTGCGCG 45107 32 100.0 34 ................................ TCTCGCTGGTCAACGGCAAGACCATTGCCGGCAC 45173 32 100.0 36 ................................ ACGCTGAAGCTGCTGGCCCCACTGGCGTCCGTGGCC 45241 32 100.0 34 ................................ TTCCAGCGCGCCGGCTGGACGCGGGAACAGGCGG 45307 32 100.0 35 ................................ ACGGCGGAATGGCGTCCCCTGAGCCGCGAGCAGCG 45374 32 100.0 34 ................................ AGGTAGGCGTCATCGGGCTGCCCGGCCGCATTGG 45440 32 100.0 33 ................................ GCCCCGACGCCATCCCCCGGCACCCTGCTGGTC 45505 32 100.0 33 ................................ ATGCACCCGCGCAGCAAGAACTACCTGCTGAAC 45570 32 100.0 37 ................................ CGTTGTTTTGCCCTGGAAATGCAGCATCCGCCCCCGC 45639 32 100.0 34 ................................ GCCGACATGGCGCAGGAGGCGGCGGACGGCATGC 45705 32 100.0 36 ................................ ACGGCGGAATGGCGTCCCCTGAGCCGCGAGCAGCGC 45773 32 100.0 34 ................................ CATTGCCCCGGTATTGGTGGACCCGACGCGGCTG 45839 32 100.0 36 ................................ GGCTCTGCATCATCGATACCCCGCCGGCCGTGACGG 45907 32 100.0 35 ................................ GCGCAAAACCTCCGCCCCATCGAGGTCGTCACCGG 45974 32 100.0 34 ................................ AGCGCGACGTCACAGGTCGCGGTGCAGGCGGGCA 46040 32 100.0 35 ................................ CTCCCGGCCGAGGGCCGGGAGGTGCCGGAGGGCGA 46107 32 100.0 34 ................................ GGCTCTGGCTGCATAGCTGGGCCGCCTTCGTCCA 46173 32 100.0 34 ................................ CGTCACCGAACGCTTCCCCGGCGCGGCGGAGATC 46239 32 100.0 34 ................................ ATCAGGCTGGTGTCGAGCGCGGCGGCGGTCAGCG 46305 32 100.0 35 ................................ GGGCAAGGCTGGCGTGAAGGGCCGCAAGAACCGGC 46372 32 100.0 34 ................................ CTCGTCGGCGACGATGCGGTGGCGCTGCGGGACG 46438 32 100.0 34 ................................ CCGGGAGGCGTCGGCACGGCGGATATGATCCGTC 46504 32 100.0 34 ................................ TCTTACCGGGCGCCTCGCCGGACACCAGGGGCGG 46570 32 100.0 34 ................................ CGCAAGCTGCCGTCCGACACCTCGACCGCCTATG 46636 32 100.0 33 ................................ TACGACAAGGGCGTGCCGCGCCGGCGCCGCCTG 46701 32 100.0 34 ................................ GCCACCAAGGCCGAGCCCGGCGGGACGCTCTACC 46767 32 100.0 34 ................................ TGCGGGGGCGGCCACGTCGCTCCCGACCCCGGCG 46833 32 100.0 34 ................................ ATCCAGGAGGAGGTGGCGCGCCTGGTGCAGGAGC 46899 32 100.0 34 ................................ CGCCAGGCGCTGCTCCAGATGGGCGTGCCGGCCG 46965 32 100.0 33 ................................ GTCGAGACCGGCATCCGCGGCCAGACCGCCTGG 47030 32 100.0 34 ................................ GCTGGCGCGATGCAGGCATCCCACGCCGCAGGTG 47096 32 100.0 35 ................................ GACGTGACCTCGGTGGTGGAGAGCAGGGCGCCGAT 47163 32 100.0 35 ................................ GCGCCGCTCTTGGCCTCCTGCAAGGCCGTGGTCAG 47230 32 100.0 35 ................................ AGCCGCGATGCCGAGGGCTGCGTCTACTCGCGCCG 47297 32 100.0 34 ................................ ACGCTATGGGTGGTCGGCACCGGCAGCGCGACGG 47363 32 100.0 35 ................................ ATCCAGAACAAGGTAACGGCCGCCACCCTGGCCCA 47430 32 100.0 33 ................................ GAGCCGTTGTGGATCGGCCAGCGCCGCGGCGTG 47495 32 100.0 35 ................................ ACCACGCAGGTGTCCATGGGCACCTCGGCGGTCAC 47562 32 100.0 34 ................................ CTGACCGGCGCGGTGGACGTGCAGGGCGACCGAC 47628 32 100.0 34 ................................ CTGGAAGTGGGCGCCCGCGGCGGCATCGGTTCGG 47694 32 100.0 35 ................................ TACGCGCTGTTCCTGGAAGCGGGCGCCCGCGGCGG 47761 32 100.0 33 ................................ CCTTAATACCACTACGGCATCCCACACCGCCTC 47826 32 100.0 34 ................................ TCCAGGTCGGCCGGAGCCCCGGGCAGCTTGCGGT 47892 32 100.0 35 ................................ CGACTATCCGGGCGAACGCCGATGCTCTCGCCGAC 47959 32 100.0 35 ................................ CAGGCGGTCGCCCTGCACGTCGGTGGCCCCGGCCA 48026 32 100.0 36 ................................ CTGCGCCAGATGGTCGGCGGCAGCCAGGGCCCGGGC 48094 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 58 32 100.0 34 GTCGCCCCTCGCGCAGGGGCGTGGATCGAAAC # Left flank : TGTGGAGGTAGGCGTCGGATGCTGATGCTGATCGCCTACGACGTGAACACCGTGACGCTGGCCGGGCGGCGGCTGCGGCGGGTGGCCCGGGCCTGTCTGGACTTCGGCCAAAGGGTACAGAACTCGGTCTTCGAGTGCGAGGTGGATCCGGCCCAATGGGCGGACCTGCGGGCTCGGCTGATCGAGGGGATCGACCCTACGGTGGACAGCCTGCGCTTCTACCGGCTCGGTGCCGAAGGGCGGCGGCGGGTGGAGCATGTCGGCGCCAAGCCGACCCTCGACCTGGACGGCCCGCTACTGTTCTGAGAACCTCTCGGATTGCCCGCGAACCCTGAGTGCCCATCGCGGTGCGGACGGGTTCGCGCATCCCCAACAGCCTTGTCTCGCAAGCGCTTAGGACACGGCGCCTGGTGAACCAAGCCGCGGCGCGAGCCACGGTTCGGTGGTTCGCGGCCGACCGCTCTTTTCCATTGTGAATGGAAGCGATTAGAATCCCCGCG # Right flank : TTTATCAAAGGGTTATCTGGGACAAAGGTAACCGGGGCAAAACCTTGGGCGTTGGTGCGTTTTGGGGGTTCCCCTGGCGTGGCTTTTCCGATTCCCTGGCGGGGTGCCGACGCCTGAGAACCTTGATGGTCTGACGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCTCGCGCAGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCTCGCGCAGGGGCGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 6689-12344 **** Predicted by CRISPRDetect 2.4 *** >NZ_SKBM01000012.1 Paracraurococcus sp. NE82 NE82_contig12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6689 36 100.0 30 .................................... TGATCCGCTGGAACGCGGCGCAGCAGGTCC 6755 36 100.0 30 .................................... ATCGCGGCGACGCAGCCGGATCACCCGCTG 6821 36 100.0 30 .................................... ACGACGCCTGCCGTCGTGGACCGCACGGCT 6887 36 100.0 30 .................................... ACCCAGAGGTCGCGGCCGTTGTGCGTCTCC 6953 36 100.0 30 .................................... TTTGGGTGCGCACATACGTCACGTGCGCCT 7019 36 100.0 31 .................................... CGCCCCGCGGTAGATGCTGCGGCCGATCTCA 7086 36 100.0 30 .................................... CGGGTCGGCCTTGACCATCTGGTTCATGCT 7152 36 100.0 31 .................................... GATGACACGCTGCGCCTGCCGGATGTGCAGA 7219 36 100.0 30 .................................... CTCCTTGTCGTTGCTGGCGGGCTTGAGGCT 7285 36 100.0 30 .................................... GGCGGATCGAGAAGGCCCGCGCCTCGCTGA 7351 36 100.0 30 .................................... ATCGCGGCGGCGGCCAGCGGCGCCATGGCC 7417 36 100.0 30 .................................... GACGTTCGTCAGCGAGCACGCCGGCCACCG 7483 36 100.0 30 .................................... ACCGAGGTCGTCGGTGACGCGCACCCAACG 7549 36 100.0 30 .................................... GGCGATGCCGTGCTGGCGGCGCAGGCCTCC 7615 36 100.0 30 .................................... CTCGTTGGCGGCGGGGAGGCAGGCGGTGGC 7681 36 100.0 30 .................................... CGCCGGCAGGGAGGCCATCAGGTCATCGAC 7747 36 100.0 30 .................................... TCGTGTTGTCGCCTCGCTCGACCGCGGCGT 7813 36 100.0 30 .................................... GGGTACATAGTCCTCCGGCGTGTGCGAGAG 7879 36 100.0 30 .................................... GCGAAGGTGCCGACGCCCCGCGACTCCTGG 7945 36 100.0 30 .................................... GCGCCGGCGCGCTCGGGGCAGGCGGCGGCG 8011 36 100.0 30 .................................... GCGGTCGATCATCGACCCCAGGTTGATAAG 8077 36 100.0 30 .................................... GCGAAGCTCAGCGTTCTCGCGCGCCAGGCG 8143 36 100.0 30 .................................... GCGGATGCCGGACGCCTATCGGGAGGAGGC 8209 36 100.0 31 .................................... CCCGCCCCGGCCGGTGACGCGGCGGGCGAAG 8276 36 100.0 30 .................................... GGCTTACGCCATCCCCCGTTCGCCCCCCTT 8342 36 100.0 30 .................................... GAGGCCAAGCGCCGGCTGCGCATCCTCGAC 8408 36 100.0 30 .................................... GGCGAAGCTCCTCCACCGCGCCGGGGAAGC 8474 36 100.0 30 .................................... GCGTTCCGCGCCGGCTCGCGCGCGCCGCTG 8540 36 100.0 30 .................................... GGCGCGCAGCACCTGGACCAAGCGGGCGCT 8606 36 100.0 30 .................................... GTAGTCCACAACGTCTTCGATGTAGTCGGC 8672 36 100.0 31 .................................... CTCCCAGACGCAAACCCGCCGCAATACGCCT 8739 36 100.0 30 .................................... GCGATGCCGCGCCGGCCGTAGGAGGACAGC 8805 36 100.0 31 .................................... GACAACCCCACCGCGCCGGAGGTCACGCTGG 8872 36 100.0 30 .................................... CGCGGCGCGCGCATCCCGCAGGAGCCACAC 8938 36 100.0 30 .................................... GCGCGAGTTGAACCGAGTGATCGAGGCGCT 9004 36 100.0 30 .................................... CCCGCCGAGAGCGCCGCGCCCGCGTGGCGG 9070 36 100.0 30 .................................... GCCGGCGACGATCCTCGCGCCGTGATCGAG 9136 36 100.0 30 .................................... GCGCCGGAGGAGCGCAGGCTGGCGACGTAG 9202 36 100.0 30 .................................... AGCATCAGCACCGTCATGCCGCGGTCGTTG 9268 36 100.0 30 .................................... TGCTCGGCTCGCTCATTGGCCGCATCGTAG 9334 36 100.0 30 .................................... TCAGGTACTTGCGCAGCGCACCCTCCGATA 9400 36 100.0 30 .................................... TAGGCGATGGTCCGGGCCTCGGCCATGTTC 9466 36 100.0 31 .................................... AACAACCAGGGCGTCATCGTCGCGCCGGGCG 9533 36 100.0 30 .................................... TGGCCGGAGGCGGCGGGCTGGCCGGACCTG 9599 36 100.0 30 .................................... GTCGTACCGCTGCACCGGCACGGCCCGGGC 9665 36 100.0 30 .................................... TTGGCGGCGCTTGCCCCGGCCGCCAGCGTC 9731 36 100.0 31 .................................... CGCGGTTGGGGATCGCCAGTCGCCGGCCTGG 9798 36 100.0 30 .................................... ACGGCCGGCCGAATGCCGCCGGCGATCGCC 9864 36 100.0 30 .................................... GGCGCCGTGCATGACGGGCTGGTCGCGCGC 9930 36 100.0 30 .................................... GCCGCCTGGGCGGACATCCTCGACCGCGCC 9996 36 100.0 30 .................................... TCGCGGACGCCCGCCGTGGTGTTGAGGTAG 10062 36 100.0 30 .................................... CGGCTGGACAAGCAGTACCAGCAGCTCCTG 10128 36 100.0 30 .................................... GTGCTGTCGGGAACCATCGTACCTACCGCT 10194 36 100.0 30 .................................... GGCGCCGTGCATGACGGGCTGGTCGCGCGC 10260 36 100.0 30 .................................... GCCGCCTGGGCGGACATCCTCGACCGCGCC 10326 36 100.0 30 .................................... TCGCGGACGCCCGCCGTGGTGTTGAGGTAG 10392 36 100.0 30 .................................... CGGCTGGACAAGCAGTACCAGCAGCTCCTG 10458 36 100.0 30 .................................... GTGCTGTCGGGAACCATCGTACCTACCGCT 10524 36 100.0 30 .................................... CCACATGCTGCGCGACGGCGTCCCGACCGC 10590 36 100.0 30 .................................... TCCTCCATCGGGCGGGTGCGGACATCCTCC 10656 36 100.0 30 .................................... TGAAGGAAGTTGGCCAGGTTGTTCGCCGCC 10722 36 100.0 30 .................................... TCTGCCGCACGAACGGCTGTAAGACCATGC 10788 36 100.0 30 .................................... CTCGACCGGGCCTGCCAGCGCGTGCTCGGC 10854 36 100.0 30 .................................... CTCGCCACCAAGGGCCGCCCGATGGTGCTT 10920 36 100.0 31 .................................... GGCTGCCGGTCGCCGCCCTCCGGCCGCATGA 10987 36 100.0 30 .................................... GGCGGGAGGAGGGGCGCGCAGGCGCGCGGG 11053 36 100.0 30 .................................... TCCGTCGGCAGGCGGGACTGGAAGGCCGCG 11119 36 100.0 30 .................................... ACGGCCAGAGCCGCCGTAGACCGCGATTTC 11185 36 100.0 31 .................................... GGCAGTCGCATGGGTGGCCTCGCTATCCGGA 11252 36 100.0 30 .................................... GCATCGTGTAGGTGGACGATGCCGCCCTGG 11318 36 100.0 30 .................................... GCATCGTGTAGGTGGACGATGCCGCCCTGG 11384 36 100.0 30 .................................... CCGAAATACAGCGCGGTGCCGACCGGCGAT 11450 36 100.0 30 .................................... CACGGTGAGCAGCCTCGCCGGGGACGCCTT 11516 36 100.0 30 .................................... GCCTGCGCCGCGGCGGCCGTGGGTCGCGGC 11582 36 100.0 30 .................................... GTGTGCGGCGTCGCCCTGGCGCCGGAGACC 11648 36 100.0 30 .................................... GTGCACGACCGCCTGGCCCGCGTCGGCGCC 11714 36 100.0 31 .................................... TCCGGCGGGCGAAGGCCCGCTCCTGCTGGCG 11781 36 100.0 30 .................................... GGAAATCCCGGAGCCGCGCCGCCGCGCGCT 11847 36 100.0 30 .................................... TGGCGGGGGCGGCGCCGCTCGCCTCGCCCG 11913 36 100.0 30 .................................... TGGCGGACGCAGCTACGTGCCGAAGGCCTT 11979 36 100.0 30 .................................... CGGCGAGTGCGGCGACTGGGAGATCGGCCC 12045 36 100.0 30 .................................... CAGAGGCGCCGCACCTCGCACAACTCCTTG 12111 36 100.0 30 .................................... ATCGAGGAGCAGATCGCCTATCTCAAGTCC 12177 36 100.0 30 .................................... GTTCGGCGAGGACCTGGCGCAGAAGCACGG 12243 36 100.0 30 .................................... TGGTGCCGGCACGGCCTGGGCGGCGTCGGC 12309 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 86 36 100.0 30 AGCCTACCTGATGGGAGTCGGTAGGGAAACCACGGC # Left flank : GCAGACCCTGCTGGTTGCTACCGAAGCCGTGGCCGAATCGCTGCTGCGCGCGATGGAAAACAGGACGGCGGCGGCGCTTGCACTGCCGACGCTTCCGGACTGAGGCGAAAGCCATGAAGGCGGAGGAAGTGCGGATCTTGTGGCTGTTTGTGTTCTTCGATCTGCCTGTCGGAACGAAACCCGAGCGCCGGATGGCGACGCGGTTCCGCAACTTCCTGAAGGACGACGGTTACATGATGTTGCAATGGTCGGTCTATGCGCGGGTTTGCCGAGGCGAGGATGCAGTGGACAAGCATGTTCAGCGGGTGACGAAGCACCTGCCTACCAAGGGCAGCGTGCGCGCCCTGCAGGTGACCGACCGGCAGTACGACCGGATGCGCCTCTTGCTAGGGGAGGCAAAAAAATCGGAAAAGGTCGCGTCAGCGCAAATGGTCTTGCTCTGATTTCCGCCCGTTTAGTGGGCGAAAATCAGAGCAATTCCAAGCGTTTCCGGCAGATCG # Right flank : CATGCCGGAGAGATAGTCGGTGGGATCGCGCAGCCTACCTGATGGGAGTCGGTACCCACTCGGTAATCGAACTCCCCAGCCGCCCTCACCCCAACAACCCAATGTTTTCGCCCATTTCCAAACCTTGGGAGTAAATCGGCCAAGTCCCAAGGTTTGGAGAGAATCCGCCGTCCGGAGAAAGAGTTCCGGCCCGCTCCGCCCCCGGCACTCCCGGGGTTCCTTCGTCAACCCTGGCGCAACCTGCGGTTCCGCACGGCTGCCGCCCAACCGGAGAGCGAGTTTTCAGGAAGGAATGGTGTCCCCGGCGGGATTCGAACCCACGGCCCCCAGATTAGGAATCTGGTGCTCTATCCTGCTGAGCTACGGAGACCTATAGCAATGGTACCACGCTTTATGTCGTGCTCAAAGCGACCCTGACTCAAATTCGGCGTGCCGACGAGTTCATCGCAGACATTGGCCGCGGCGATCAGGACGAGGATATCGATGTCGGCCCAGGAGGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCCTACCTGATGGGAGTCGGTAGGGAAACCACGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 1 139-1231 **** Predicted by CRISPRDetect 2.4 *** >NZ_SKBM01000044.1 Paracraurococcus sp. NE82 NE82_contig44, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 139 32 100.0 36 ................................ CTGCGCCAGATGGTCGGCGGCAGCCAGGGCCCGGGC 207 32 100.0 33 ................................ GCCGAAGGGCGGCGGCGCGTCGCGCTGGAGATC 272 32 100.0 34 ................................ TTTATCAAAGGGTTATCTGGGACAAAGGGTGGGA 338 32 100.0 35 ................................ CACGACACCGACCCGTCCGATTCGCTGACGCTGAC 405 32 100.0 35 ................................ CAGGCGGTCGCCCTGCACGTCGGTGGCCCCGGCCA 472 32 100.0 32 ................................ ACGGTAGCGAAGCAGGTCGCCAAGACGATCAT 536 32 100.0 34 ................................ ATCAACGCCATGCTCGGCAGAGTGATGGCGGTGT 602 32 100.0 34 ................................ CAGCAGGCCGCCATGGGCGCGCGCAGCCTGGGCG 668 32 100.0 34 ................................ GCCAGGGAGAGGCCATTGGCGCCGGTCCCGTCGC 734 32 100.0 34 ................................ CAAATCCGCGCCGTCGACCATCTCGCCCGCCGTG 800 32 100.0 34 ................................ ATGTTGGTGCCGGAGAGCAGCAGCGGCATGCCGC 866 32 100.0 35 ................................ TCGAAGCTGGCGCCGGCCTCCACCGTCACCAGGTT 933 32 100.0 36 ................................ CTTGCCTTGGCCGATGACCTGTTGACCGCCCTGCGG 1001 32 100.0 35 ................................ TGCCCGAGGCCCTGGAATGCGGTGCCGGCGCCGGT 1068 32 100.0 34 ................................ ATGGCAGGCGTTGCGTGCTGCGCGCGAAAGCGTG 1134 32 100.0 34 ................................ CTCTCGGAGGTCGCGCTGGAGGTGCCCCTGCGCG 1200 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 17 32 100.0 34 GTCGCCCCTCGCGCAGGGGCGTGGATCGAAAC # Left flank : TCAGCTTCTGGGACTATCTGGGACACCGGCTCGGCGTCGCCGGCACCACCAGCGTCCCCGCACTGCCAGACCTCGTCAGGCTGCGCGTCATCGCCTGACTGCCCAGGGTTTTGCCCCGGTTACGGACAAAGGGTGGGAG # Right flank : CACGCAGCATAATACTAACGCCCTGAATGTCTGACTCAAGGGTGATGCTGTTGGCGGCTGTGGCTGTGATTCGCTGATCCCGGTTGGTTGGGAGGCGGCGATGGTGGCGGTGGCACTGACCCGGGACGAGCATACGGCGGCGGAGCTGCGGCGGCATGCTGCGGCCTGTCGGGAGGCGGCGGCGGCGCGCCGCATGCTGGCCCTGGCGCTGGTCATGGAGGGATCGCCGCGCGGGGTTGCGGCCGAGACCTGCGGGATGGACCGGCAGACGTTGCGGTTCAACGCATGCGTTGAACGGGTGCACCGCTACAACGCGGAGGGCCTCTCTGGCCTGTCGAACCGCCGCGAAGGCCTCGGGCGCAAGCCGCTGCTGACGCCGGAGCAGGGGGCGGTGGTGGCCGAGTTGGTCCGCACCGGCCCTGACCTTGCAAGCCATGGCGTGGTGCGCTGGCGGCGGGCGGACCTGGCCGCGGTGATCGAGCAGCGGTTCGGTGTGCGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCTCGCGCAGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCTCGCGCAGGGGCGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //