Array 1 38098-40140 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZOR01000006.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712390, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 38098 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 38159 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 38220 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 38281 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 38342 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 38403 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 38464 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 38525 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 38586 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 38647 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 38708 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 38769 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 38830 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 38891 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 38952 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 39013 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 39074 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 39135 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 39196 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 39257 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 39318 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 39379 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 39441 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 39502 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 39563 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 39624 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 39685 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 39747 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 39808 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 39869 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 39930 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 39991 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 40052 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 40113 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 56648-58019 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZOR01000006.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712390, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 56648 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 56709 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 56770 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 56831 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 56892 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 56953 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 57014 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 57075 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 57136 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 57197 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 57258 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 57319 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 57380 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 57441 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 57502 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 57563 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 57624 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 57685 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 57746 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 57807 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 57868 29 100.0 32 ............................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 57929 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 57990 29 93.1 0 A...........T................ | A [58016] ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //