Array 1 12089-10191 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAJQ01000020.1 Prevotella oulorum JCM 14966, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================================= ============================= ================== 12088 49 100.0 28 ................................................. TCATCAGATTTACCTAACGGGTATGTAG 12011 49 100.0 27 ................................................. TTCCGATAGCTTCCAAGATGGCGTTGA 11935 49 95.9 28 ...............................................TG CACCTTCATCAGGTTCTCGTTCTCCCCT 11858 49 100.0 28 ................................................. TGCGGAGGAATTTAAGGAAACTATTGTA 11781 49 95.9 28 ...............................................CC CATATATGGGAAGTGGAACAACACTAGT 11704 49 95.9 29 ...............................................TC TTTAATAATTTTTTCTTTGTCACTCTCCA 11626 49 98.0 28 ...............................................T. GGTTTATTCCTATCAAGTCATCAATGCA 11549 49 95.9 28 ...............................................TC TGACTGGGATATTTGCTGACGTATAGCC 11472 49 98.0 28 ................................................G CAAGTTATCTATTTTATATTCTGTTGCA 11395 49 95.9 28 ...............................................CA ACACCTGCAAAACACTTTTCTTTTTCAT 11318 49 95.9 28 ...............................................CG GATAGTGTAGCATCCGCATTACAGGATG 11241 49 100.0 28 ................................................. AATTATATTCAGAACCACGAGAATTCCA 11164 49 95.9 28 ...............................................TC TATTTGTTTATTAGTAAGGTGTTTTCCA 11087 49 95.9 28 ...............................................GA GGTTTCGCGCATCACAATCTCGAGGTGG 11010 49 100.0 28 ................................................. TTATCCATATCAGATAACGTGCCATACT 10933 49 95.9 27 ...............................................TG GTTGTGTCATACCATAACGGAAATCAA 10857 49 95.9 28 ...............................................CC GTTATGCAGGATAAAGGTTATCAGGCTA 10780 49 95.9 28 ...............................................CG CAGGAGCTTTCAAACGAACACTATTGGC 10703 49 98.0 28 ...............................................G. GAGTGGCAAAATGAATGCACCAACGCAA 10626 49 95.9 28 ...............................................TA CACCGCAAGAATTCAGAGAAGTATCTAA 10549 49 95.9 28 ...............................................CC TTTACGAGTTCGTTGATTTTCTCCGTCA 10472 49 98.0 28 ................................................A GAGAAAGAAACCGACCATGTCTTTATCT 10395 49 95.9 29 ...............................................CC GAAGATATTCGGCATCATTTCCGCATTGG 10317 49 98.0 29 ...............................................T. CGCAGCTATCTATCAACGAACTGCTGTTC 10239 49 95.9 0 ...............................................TC | ========== ====== ====== ====== ================================================= ============================= ================== 25 49 97.1 28 GTTGTGATTTGCTTAAAAATATCTACCTTTGTGGTATCAACAACAACAT # Left flank : GGATAAACTGCGAGAAGCGCAACTCGAAGAATTATGTGCTGTTCCTCGGCGAGACAGGCGCAGAAAGCAACCAGGCTCCGTGCCTCAGCCTGGTACAATTCCAGATTGATGGCGGGGAACTGGTTCTATCGGCCTACCAGCGAAGCAGTGATGCAAACCTTGGGTTGCCAGCCGATATATACCATCTTTATTTGATGGCACGACAGATAGACCTGCCACTGAAAAACATAACGCTTAATCTCGGAAACGTACACATTTACGATAACAATTTAGAGCGAACAAGGCAACTGCCTAAAGGTGATGAGAGCGTGAAGTTTGACTTGAATGTTTGAAAAGAATGATAAGAAACAAGAAACGCCCCAGAGAAATCTGAGGCGTTTTTTATATTGGGGGGAACCTAAAAAAGAACATTTCGTTTTACGAGATAGAACGCTTCGTTTTATTTTTTCGGAACGCTTCGTTTTACGGATTATATACCTTTTTCTTCTCTTCCACCGTCC # Right flank : ATTCTTTGTAATTTGTTGTTTATCAAAAGGATATAAGGTTGTTGAAGAAAATAAAAATGGTGCCACAAAACGAAATCCCACTTCATTGAAGTGGGATTTTTGTTTTCTATTAAGGTGATTTCTTATGATGCTTTCTCCAAGTTTTTTCTTGTTGTAGGCTAAGTTGTTAGGAAACAACAAAAAAAGATTTCTTTTTAAACGAGGCATTTCAACCAAAGATTTATGGTTCTCTCCTTTTCCATCCTGCATCTTTTAGAATAATTCCAATTGTTGTCCTGGTGCGTTAGGCGCTTTAGGTTTCTCGCCAAAGAAAAGGCGAATGTTGGCAAACTGTTTATCTGTGATGCATAACATTCCCACCATTCCGCGTTGCGGGAGGTTCGCTTGAACACGCTTCATGTGCACTTCTGCATTTTCTATACTTGCACAGTGGCGAACATAGATAGAGAATTGGAACATGGTAAAGCCATCTTTTATCAGCATTTTTCGAAAATCCATAT # Questionable array : NO Score: 4.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:-0.5, 7:0.00, 8:1, 9:0.27, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTAAAAATATCTACCTTTGTGGTATCAACAACAACAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTGAAAATATGTACCTTTGTGGTAGCAACAACAACTT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 36737-37246 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAJQ01000023.1 Prevotella oulorum JCM 14966, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================================= ============================ ================== 36737 49 100.0 27 ................................................. GACAAAATACCGTATTTGAGTGAGTAT 36813 49 100.0 28 ................................................. TCCTCCTCCATTATGTTCGCCATGCACT 36890 49 98.0 28 ...............................................C. CCTTCGGGCAAGGCCCTCGACCTGAAGG 36967 49 95.9 28 ...............................................GC TATAGGTTTTCTATCGTCAGCAATGCGT 37044 49 95.9 28 ..............A.................................A ATGCTTTCATTCAATTTGTAAAGCAGGT 37121 49 93.9 28 ..............A................................GA AACAATATTATTGATACCATCAAGATAC 37198 49 95.9 0 ..............A................................C. | ========== ====== ====== ====== ================================================= ============================ ================== 7 49 97.1 28 GTTGTGATTTGCTTGAAAATATCTACCTTTGTGGTATCAACAACAACTT # Left flank : GTTACACGATAGCACCACCACAACTGCAAGCGGCGCCCCATTCATTCAAATCCCAATTCCACGCGCGCTTCCTCCGTCATCATGCTTTGATCCCAAGCAGGTTCAAACACCAAGTTGACATTGGTTGCCGCAACGCCTTCAACACTATCAACCTTTGTGCGTACATCCTCTAAAATAAAGTCGGCTGCAGGACAGTTGGGTGCCGTGAAAGTCATGTCAAGATCCACGTTGCCATCGTCCTTTACATCAATCTTATAAATCATGCCCAAGTCCCAAATGTTGACCGGAATTTCGGGGTCGTAAACCGTTTTCAACACATCAACAATGCGTTCCTCAATCTTTGTCTTTTCCTCTTGTGTCATATTTTTGCTGTCGTTATCGTTGCAAAGATAGCAAATAATATGAAATAGCAAGAGCCACGCGCCATATTTTTGTCGCCCACCGTGCTGCCACCTGCATCTTGTTGTTTTCGGCATGCAGCCTATTATGAGCGCTTTTCA # Right flank : TTCTACCTATGGGGCACAGAACGAAACGTATATAGAAGATGAGAGGCCGAAAAAGAATGAAGTTGTTTAACATCAAGATGTTACGCGTATTTAGATAGTTGAAGCTCCTCAAAACGAAATGTTACATCGTGTTACATTCATGTTACATCTGAGGGTTTATCCGACTGACGATTGATACATAAATGTTACATGGGTGTTAATTTGGGGTTACAGATGGAGGATGCGGAGCGATGAGGGGGCGATTGTATCGCTTCTTTTTTGTTTCCTCTTTTAAAAATATTATATGCGTTTTTATTCTATATAATTATTATTTAGTATATTTGCAGCAGACAAACAATGAGAATATGGCAAAGGTTATACATGTGCATCTACTGCATGGAATAGAGGGAACGAAGCAGAAGGATTGGTATTTCAGCAGCATATCGGCTGTATATACGGTATTCACGTCGAAACAGGTTGGAGCGACACGTAATTACTTGCTCCATGCAGGGCTTTCAGGT # Questionable array : NO Score: 4.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:-0.5, 7:-0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTGAAAATATCTACCTTTGTGGTATCAACAACAACTT # Alternate repeat : GTTGTGATTTGCTTAAAAATATCTACCTTTGTGGTATCAACAACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTGAAAATATGTACCTTTGTGGTAGCAACAACAACTT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //