Array 1 210121-208593 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDWX01000002.1 Yersinia pseudotuberculosis strain 379 StPb PI NODE_2_length_294129_cov_34.1684, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 210120 28 100.0 32 ............................ TAGCGGAATGAAAGGTAATTTACTGACCATCT 210060 28 100.0 32 ............................ ACTGACTTAGCCAGCCGCGCCATCTCGTCATC 210000 28 100.0 32 ............................ TTTCCCGGCATTTTGTCGGGTACTGTTGTTGA 209940 28 100.0 32 ............................ ATCGGTAAAGATGCCTTTAAAGGGCTACTGGT 209880 28 100.0 32 ............................ TAACGTCCAAGCCTTCCTCCAGTCCGTACAGT 209820 28 100.0 32 ............................ GGTTGGAATCAATGTCATATCCGTCATGCTAT 209760 28 100.0 32 ............................ AGAAAATAGCGGATGTGGCATCAGGAGGATAT 209700 28 100.0 32 ............................ AATTGAAATAATGGTTAGTGGTAACGGGCAAG 209640 28 100.0 32 ............................ GTCAACCTTCGGATGATTATACGGTGCTTTTT 209580 28 100.0 32 ............................ TGTGATTTAGCGGCGGCCTGTGTGCGCCTGTA 209520 28 100.0 32 ............................ TAACACAGTAACTTCCGAGGCCGATGATGGTA 209460 28 100.0 32 ............................ CGATATGACGCAGGCGGTCAATCAGGCCATCT 209400 28 100.0 32 ............................ TATACCGAGAAGCATTACAACGAAAACACCGA 209340 28 100.0 32 ............................ TGAGTAGCATTCCTGCTGATGGTCTCACCAAT 209280 28 100.0 32 ............................ ATTGATATCAATCAATCCATCTATCACGCCAG 209220 28 100.0 32 ............................ TTGCGGAGTTCAATCACGTAAACCTGATTGTT 209160 28 100.0 32 ............................ ATTCCAATCATCAGTAACGTGTGTTCTTTCCA 209100 28 100.0 32 ............................ TGATAGGGTACATGTGTTCTTAAATTTCTAGC 209040 28 100.0 32 ............................ ATCTTCTACCTCGGCTTTTAATTCCTGGACTT 208980 28 100.0 32 ............................ GACACGTTGGATGAAGCACAACAATTAATTAT 208920 28 100.0 32 ............................ TGTAAATTCATAAGATCTTTTAAATAACTCAA 208860 28 100.0 32 ............................ TTAAAATTGTTGATGGCATAGCGATACTTTTC 208800 28 100.0 32 ............................ TCGAATATCTGGGTGGTCTTGGCCAGCACTTC 208740 28 100.0 32 ............................ AAGCACAGCCGCAGTGCTTGCAATGTCCACGG 208680 28 100.0 32 ............................ TTACACGCTGGACGGCCAGGGAGACGAGAGCT 208620 27 89.3 0 .....................CC.-... | T [208595] ========== ====== ====== ====== ============================ ================================ ================== 26 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGCCAGAGCGTATTGTCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAAACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATTGGCCACGCCACCACCACCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCCGATTCTTGTGACCCTCTTTTTATCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAGGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : TCTCAGCTCTCTGGCGGCGTTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCGCTGTCGTTCAAGGTATTTGGGTAGTTACGGGCACGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGCAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGTGGGTTTTGCCGCAGCAGTTGTAGATTTTGCAAACAACGCTGGCGATCAATCCCCAAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 15159-16630 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDWX01000031.1 Yersinia pseudotuberculosis strain 379 StPb PI NODE_31_length_40432_cov_31.9356, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15159 28 100.0 32 ............................ AGATACAGGCGAAACCATATTTTATATGAACC 15219 28 100.0 32 ............................ GCTATCGACGCCGACAAATCCGTCAGCAGAGA 15279 28 100.0 33 ............................ TTTACGATACAATTAATCTCGGTCAATGTCTTG 15340 28 100.0 32 ............................ TCGTTCACCTGAGCGCTTGACTTCAATATTAG 15400 28 100.0 32 ............................ GATGTCCATTACGAACCTCGGCAGTAATGTAT 15460 28 100.0 32 ............................ TATGAGAGGTAGCCTTTAGTAGCGCAATGCTT 15520 28 100.0 32 ............................ ATATGGATCAAAGTCAGGCAGCTCCACCTCGA 15580 28 100.0 32 ............................ GCTGAATCTACGCCATCACTCGCTTTCTGAAT 15640 28 100.0 32 ............................ AGAACAATAAGAGAAAGCGGAGTAAAGGCGGT 15700 28 100.0 32 ............................ AATCTGGCGGCGCATTATCTGGTTTTATGTAT 15760 28 100.0 33 ............................ ACAATCAGCTATTAAAGAAGAAGAAGCATTTAA 15821 28 100.0 33 ............................ ATGTTCGACGATTCATTTTATCTGTATTTCAGT 15882 28 100.0 33 ............................ ACTAATAGTTGGCCAGCTGTAGGCTCGTCTGCA 15943 28 100.0 32 ............................ CGGATAAAGGTCCATCAATGACAAGCTGAAAT 16003 28 100.0 32 ............................ AGAATTTACAGCCGTTATTTAGCATTGCTGCC 16063 28 100.0 32 ............................ ATTTACCCGTTCAAATTTAGGAATATAGAGAA 16123 28 100.0 32 ............................ ATCATTATCGATAAATGCGCGACGCATACGAG 16183 28 100.0 31 ............................ AAAAATCTGGGATATTAAACGCTGTTGCACA 16242 28 100.0 32 ............................ TGGAGCGTAAAACCTCGTTAACCCCTTCTATT 16302 28 100.0 32 ............................ GGACAGTGTCATGAATTTGGCCCGTGCCGCGT 16362 28 100.0 32 ............................ TCCATGACACCGGCACGCGTCAACACCGAAAT 16422 28 100.0 32 ............................ AGAACCATTTCAGCCGCTTGCTTACCACTCAT 16482 28 100.0 32 ............................ GCAATCCGATGAATTCAATCTACCTGCTATCT 16542 28 100.0 33 ............................ TCCTAGGCGCTTACCCATTCCATAGCGATCGTT 16603 27 85.7 0 ...................-A.A.C... | T [16627] ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCACCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCCGCGAGGGGGGAGACATATTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : ATTCTGGACCATGCGTTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTAGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //