Array 1 76752-76604 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIJD01000003.1 Cronobacter sakazakii strain C8 NODE_3_length_530089_cov_153.312, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 76751 28 100.0 32 ............................ TTCTCCCGCTCTTTGCGCAGCGCCAAAAGCTC 76691 28 96.4 32 A........................... CGAGTGATGTAGATCATTACAGCGCCGGGCTC 76631 28 85.7 0 .....................CGGA... | ========== ====== ====== ====== ============================ ================================ ================== 3 28 94.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATCATCGACCAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCGAGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGACGTTAAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : TCACAGCGAATTCCCTTGCCGTCACACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCCATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTTACGGTTCAGGCGGGTAAAACCGCGTTTGCCGGTAAAAATGTCACGACCTGGGGATATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCGA # Questionable array : NO Score: 3.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.50,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.77 Confidence: MEDIUM] # Array family : I-F [Matched known repeat from this family], // Array 1 243311-244132 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIJD01000002.1 Cronobacter sakazakii strain C8 NODE_2_length_546596_cov_132.164, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 243311 29 100.0 32 ............................. GCCAAATACGATAACGTTTTTAACAAGTTGCG 243372 29 100.0 32 ............................. CATACAACATTTACGCGGACTATATCCGTGTC 243433 29 100.0 32 ............................. ACAAGCCGCAGCGGCGGCGGGGGGTTATTTTG 243494 29 96.6 32 ....................A........ CGGTGCGCGCCTACTCTGGCCGCACCGACAAT 243555 29 100.0 32 ............................. CAATGTACGCGGCCACAATCGAGAGCGAACTC 243616 29 100.0 32 ............................. CCAGTGATTCGGGATATCAAACGGGGCGCACG 243677 29 100.0 32 ............................. CGGCTGAGTCGCGGGCGAGCGAAATTACTGAT 243738 29 100.0 32 ............................. CTCAATGCGCAGGAAGTTGCAGACTTCTTCAA 243799 29 100.0 32 ............................. CTTCATCAATCACAAATCCCGCTTGAAACTAA 243860 29 100.0 31 ............................. GCCGCTGAATCAATAAAAGCTGGCGACTATC 243920 29 96.6 32 ...........G................. TCAAAGCAGTAGCGTAACGTGAGGCATTTATG T [243922] 243982 29 89.7 32 .T.....T...G................. GGGCAGTATTTCGACTCTGTCGTCACCGCAAA 244043 29 93.1 32 .T.........G................. TACGGCGCTTGCAGCTCTTGCGATCATTATGG 244104 29 82.8 0 .T.........G.........TA.....T | ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.1 32 CCGTTCCCCGCACGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGTCGGCCTGCCGTGCTTGGCGATCTGCTGACTGTGACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACTTTCGTGTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAACTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : TACGCCACCTGATTCACGGCGCTGATGTGACATAGGGATCACGATTTCAGTCATACCTTTATTGAACCCGCTTCGGCGGGTTTTGTCACATCCCGTTCCCTGTTACTCTTTTGGCACATTTATCAAAGGGAATAGGGATATGAAGAAGGTTGTCATGGCTATTATTTTAGGCTCTTTTCTAACTGGCTGCGCGCCTGGCTACGTTTATACGCCACCTTCTAAGGTGGAATATGATAAAACCATGCAAGAAGCAAAGCGCAAGGACGCAGAGTTTGCTGAAAAAGTAAAAAATATAAATTTAGATACTGCGGATGTTGGGGTAAAGCCGAAGGATTACCAATCTTTGGTTGAATCGGCGATTCGTGAAGGTTTGAAAGATCCAGACTCTGCTAAGTTCTACGACTTCACCTCGCCACGCAAAGAAGTAATGGTTGAACAGGGTGACTTTGTTTATGGCTACTCGACATGTGTTTATGTTAACGCCAAGAATTCATATGGTG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCACGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCGTTCCCCGCGCGAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 271302-272611 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIJD01000002.1 Cronobacter sakazakii strain C8 NODE_2_length_546596_cov_132.164, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 271302 29 100.0 32 ............................. ACACCCGACCGCTGACAGATTTTGTCACTGTT 271363 29 100.0 32 ............................. ATTCGCGGGAATTTCCACCCGCGCCAGATTAC 271424 29 100.0 32 ............................. GCGGTTCTCTGGTGGCTGACGCCGTGGAGCGT 271485 29 100.0 32 ............................. CAGTGCCGCACAAAGCGCCACTAACGCCGTTT 271546 29 100.0 32 ............................. AACTTCTTTCATTTATATTTCCCCTTTACGTT 271607 29 100.0 32 ............................. GGTGCAGCCAATCAGTTCAAGGCTGGGCTTTT 271668 29 96.6 32 ............................T GGTGGTATCAATACCCGCCGTAGGCAACACCA 271729 29 100.0 32 ............................. TGGCGGGCGGCGCGGGTTTAATTGGGTTGGGG 271790 29 100.0 32 ............................. CTCACAACACTCCGGCGTGGTGACGTTGTGAT 271851 29 96.6 32 ..A.......................... GCGCGGCCTGGAGTTTAACCCCGGATACCGCC 271912 29 93.1 32 ..A.....G.................... GTGTGGCGCAGAAAATGAAACGGCTTGAATAC 271973 29 96.6 32 ..A.......................... ATGATGTTAGGTGGTTTTATCGGTGTAATAAT 272034 29 93.1 32 ..A............C............. CCAGAGGGTGACGGCTGGTTTGTTGGCTCTAT 272095 29 96.6 32 ..A.......................... TATTTCTTTTCGTACTCAACCGCGGCGCGATA 272156 29 96.6 32 ..A.......................... CCAGGATTCGCCAACGGTGACGCCGGCGTTCG 272217 29 96.6 32 ..A.......................... TAGTTTTTCGGCCTGAAAATCATCATTGAACC 272278 29 100.0 32 ............................. GCTCGTTTGTCGTTGACGGAGCCGCGTCAGGG 272339 29 100.0 32 ............................. TGCCCCGCATCGATCAGGTTGCGCAGCCATTG 272400 29 100.0 32 ............................. CCAATCATTAAAACATAAGGAACCACCTATGA 272461 29 96.6 32 ........T.................... CGACACGATCCGCCGCCTGGGTTACGAAAGCG 272522 28 96.6 32 ...........-................. ATTCACGGTAACGTCACCGCCAGCACCGTTTT 272582 29 93.1 0 .....................G......A | C [272587] ========== ====== ====== ====== ============================= ================================ ================== 22 29 97.8 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGATGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCAGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGTCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACCAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : AGTACATCAATAACGTGGCTTAATGAATATGTGCAGGATATATTATTTTATATGTCCTTATCTAATCATTAACTCTGAGCTGGGAAATAAAGATAACGGTAATAATAAAAAATGAAAGGTATTGTATCTGTTCTATTTTTGCTAGTTATAATGAAACTCTTTCTATTGCTAACTTTTATGTTTGTTAATTTAAATTAAATGTTAATTACAGCGTTTATTAAGTTAAACATGTAGAATTTATACTTTCTTCAATTAATAGGAATATATAAATGACATGGGATAAGTATGCAGCAATACGTCATGCACATGATCGGGCCTATAGCAATAGCCATCATAAGTGTGAGTTATTTGTCAAAGAAGCTATTATTGCTGGTGGGGTGGATATATATCCAACACCTTCTGCAAAAGATATGGGTAACGCATTGATTCAATCTGGTTTTTATGAAGTTTATGGTGAGCCCGTAGCGGGTGACGTTGCTGTTATTAACGCGATCCCCGGA # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : GTATTCCCCGCGCGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //