Array 1 105148-108591 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQMO01000005.1 Corynebacterium sp. 20A NODE_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 105148 29 100.0 32 ............................. CTCACCGGCGAAGCATGGGTGAGTGGCAATGC 105209 29 100.0 32 ............................. GCCGTAGTGAGCGGGCGGTCGAAGGTCGGCGG 105270 29 96.6 32 ............................G CACGGCCCAAAACAATACTGGTAGTGAGCGAT 105331 29 100.0 32 ............................. GCAGATATCAACTCTCGGTCTATCGGTATTGA 105392 29 96.6 32 ............................G GTCAAGGACCTCGGCTCTCAGGGCAAAATCAC 105453 29 100.0 32 ............................. TCTGCAACGTGTAGGAACATCTGTCTAGCGCG 105514 29 100.0 32 ............................. GCTTATTCGAGCGCTTGGGCTGTTCGGTGGCG 105575 29 96.6 32 ............................T ATGACTCCGCTACTGTCAGCGACCGGGCTAGC 105636 29 96.6 32 ............................G ATCGTCCCGGCCGATATCTAGGTATCCGTCTG 105697 29 100.0 32 ............................. ATCGACAATGAGCGCGCCGACTTTATCCTCGA 105758 29 100.0 32 ............................. ACCGCGTCCCCACTCGGGGTAAACCGCAACTC 105819 29 96.6 32 ............................G GAGAATCGATGAGAAGCTGGACCAAGCTCGAG 105880 29 96.6 32 ............................G CTAACAACGTTGAGCTGCCAGTTGACTATGAG 105941 29 96.6 32 ............................G ATCGACCAGCACAAGGCCACATTCGAACTCAT 106002 29 96.6 32 ............................G GAGCTGGAGCACATTTTGTGCTGGCCTAATCC 106063 29 100.0 32 ............................. GCAGACATTAATGCCCGGTCTATCGGTATTGA 106124 29 96.6 32 ............................G AGAGAGAAAGAAACTCTCACCACACACAGAAA 106185 29 100.0 32 ............................. ACGCCGATGTTTTCGGGCCCGATGGCTTCCTG 106246 29 96.6 32 ............................T ATTTCCGGCCCGCCGCGATGGCAGATTAGCGA 106307 29 96.6 32 ............................T GTGGTGTCGATCCTAGGGGCTTGGCGCTGTAT 106368 29 96.6 31 ............................G ACCGCGACGACATCTCGGACGATGACAAGGA 106428 29 96.6 32 ............................T TCCGCCGAGGGCATGAGCGTGCTCACGGGGTT 106489 29 100.0 32 ............................. GAGAAATCCGGCAGAATGATCGACGCGGGCCC 106550 29 96.6 32 ............................G GGCGGTGGCGATACCCTCACCGCGGTGCTCTT 106611 29 96.6 32 ............................T TCGCGCAGGCGCTGCTGGCTGTGGTGTCAGTT 106672 29 96.6 32 ............................G GGAACCTCGAAGGGTGGGACGGTCATTTCATT 106733 29 96.6 32 ............................T TCGGCCCGCTCCTGGCTGTCGCTGCGCAGGAA 106794 29 100.0 32 ............................. ATCGCCTTCATGTTCGTGACGTTGCTGGTGTC 106855 29 96.6 32 ............................G GATGCTTTCATGGCACTCACCGAGACTGAGCA 106916 29 96.6 32 ............................T CGATGCACCAAGGGCTAGCTGACGGCTCCCTA 106977 29 100.0 32 ............................. AGCGCGGCCCGTATCGCCTCGATCTCAGAGAC 107038 29 96.6 32 ............................G GGGCGCGTGTCCAGCTTCAGCTTGGCACGAAC 107099 29 100.0 32 ............................. ATGCTGTTCATGTTCGTGACGTTGCTTGTGTC 107160 29 96.6 32 ............................T ACGAGATCGAGGACACCCAGCTACGCGGTGAT 107221 29 100.0 32 ............................. ACAATAAGGCGCGCCTTCCGAAGTCCAGCTTC 107282 29 96.6 32 ............................T CCCCAGTTCGGAGGGGGAGTACACAGTGATCC 107343 29 100.0 32 ............................. TGCTGGGCTTGCTGCGCGTGCGGCTGCAACCA 107404 29 100.0 32 ............................. CCGCCACAGATGGACTGGGATTACATCTACTC 107465 29 96.6 32 ............................G AATTCGACATCGACGCCATCGCGGACGAGGTG 107526 29 100.0 32 ............................. CCGTCCCGACAGCCGATCACCACTACTGCCGA 107587 29 96.6 32 ............................G TCGCCGCTGGGTAGCGTGTTTATGGATAGCAC 107648 29 96.6 32 ............................T CATCGACGCCGGCTACCGCGGAGAAATCGGGG 107709 29 100.0 32 ............................. CGGCGCCCGGCCGCCCCCACGGCGCGTGGATA 107770 29 96.6 32 ............................G TAAGCCCCGCCGTGTGCGGGGTTTCTCTGTTG 107831 29 100.0 32 ............................. GCCTTTTGGGCCAATGTCAAGAACATTGGTGA 107892 29 100.0 32 ............................. AAAAAACTGTCGCGCGTTGAGGACCGCGCCGC 107953 29 100.0 32 ............................. ATGGGCGCGGCGGCCGGCCGTTTGGGCGCGAC 108014 29 96.6 32 ............................T CAGTGCGCGGCGCAGCGGCTCGGTAATTCTAT 108075 29 96.6 32 ............................T TCCCACTCGGGCAGCGCCGGGTCGGGGTTGAT 108136 29 100.0 32 ............................. TGGTGCCCTTCACCGAGGCAAGAGCATTATCC 108197 29 96.6 32 ............................T TGCTAGATCCGAAACGGTCGATCCGCACCGAG 108258 29 100.0 32 ............................. TGTGATTATCCGCACCGGCAGCAGGCCGGAGC 108319 29 100.0 32 ............................. TTTTTAAGCAGGTGATTCTCGGCATCTACCAG 108380 29 100.0 32 ............................. CAAAAGTCCTCTTCGCTGAGCTCGGGGTCAAG 108441 29 96.6 32 ............................G AGGACTCGGCAGTAGTCGACTACATTTTCCGC 108502 29 96.6 32 ............................G TCGGCTCCCTCGGTGAGCACCTGCACGGTGGC 108563 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 57 29 98.2 32 GTTTTCCCCGCACACGCGGGGATGAGCCC # Left flank : TGTCCTGACTGCGGATGCGGAGCTATTGCTATGGAGTGAATTGGAGCTTGTGTCCTCGGGTGTCTCCTGGGCTGAACCGGCGAGTTCATCATGATCGTTCTCGTAGTAACAGCGTGCCCTGCAGGCTTACGGGGGGATCTGACTAAGTGGCTCATGGAGATTGCGCCGGGCACGTTTGTGGGAACTCCTTCAGCCCGGATCCGTGACCTGCTGTGGGATAGGACCGTAGGCCTCTGCAAAGATGGGCAAGCCCTTCTCGTGTATTCCGCCGACTGCGAGCAGGGCTTCGAATTCAGGACGCATCGCCACAAGTGGATGCCTCGTGACTTCGAAGGCCTGACCTTGATGGTTCGCCCTGGAGCGTCGGACACGCCACGGCGACGTACTGGCTGGAGCAATGCCCGACGCCAACGCCGCACCTACAGATCGAGGTGAGAACTTCCCGCTACAAGTTGTAGCTATTCTGAGCTAGGCGCTAATATTTCACCAGCTCAGTAAGT # Right flank : CACCATCTCGTGCGGCCTAGCTCCGCTTCCCAGTTATTTCTAAGGACTGCCACCCGTCGCGTATGCCGAGATAAAAGTGTGCGCTACGGGCTGCGAGGTGTGCGTGGTGTCTATTGCGCGTTGCTGCGCGGTGTGGGGGTGGCCCTCAGCCTGCACTGCAGTGTCGCTGTTGGTTGAACTGGTTCCTGTGGCACAGCCACCATTCAGTCAGGGGGGCCCTGGCTCTGGTATTTGATTACTGCGGGTGAACATCGTGTGGTGTGTGAATACAGGCCAGGATGAGAGCACTCAAGCCAAGATTCCTAGACGCCCCACGATCACCTTCTATGCCCTCGGTGGTACTCATCGTGCCGTAGCCGCGGATAGGGCAATGTGGGCGTCGATCATTGGCTTGTCCTAGTGTGCAGTACGTAGTGATGTTGCTCTCTAGCCACGGCGGGTGGCTCACCGAGAGGGTGAGTCAGCTGTAGGGATTAGTGATACTCATCGTGTGTATCGAT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 40696-41051 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQMO01000011.1 Corynebacterium sp. 20A NODE_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 40696 36 100.0 28 .................................... TGACTCGATCGCGCCGACGCGGACGAGA 40760 36 100.0 28 .................................... GCCCGTAGAAGAATCCACTGATCCCGGC 40824 36 100.0 28 .................................... TATGCGGGCAGTGTCAGTGATGGTGTCG 40888 36 100.0 28 .................................... CAGCAGAATGCCGTTGCCAGCCAGCCGC 40952 36 100.0 28 .................................... CCATCGTGGGTGGCGATCGTGACCCCGA 41016 36 97.2 0 .................................C.. | ========== ====== ====== ====== ==================================== ============================ ================== 6 36 99.5 28 GAAGTCTATCAGGGGTATATCGAACTGAACCCCAGC # Left flank : CATTCAACAGCGATGGCCAGAGTGTTTCTACGGTCTTTCAAGACTTTGCGCAGCATTTTGGCTTATACGTCGAAGGAACAGTGGATCGGCTACAGGTGCCACGTTGGGAAGGGCAGCTCAGTGCCAGCGAAGGACAGTGAACCGGTGTGGTGCGTCGTAATGTTTGATCTTCCGGTCAAGACCAAAAACCAACGTAGGGAAGCTAATCGGTTCCGTAACCGGTTGTTCGACCTTGGTTTCTGCCGCGCCCAGTTCAGTGTCTACGTTCAGTATTTCCCACTGGCGGCGCGTCTCAGCACGATAGTAAAACAGGTGAAATGCGAACTTCCCGCAGGCGGTGAAGTGCGTATCTTGTCCGTGACAGACCAGCAGTGGGCAAAGGCGATCCGTTTTTCGAGCCACAAGGAACAAGCGGTCGAGAAAATCCCCTCTCAACTCACGATTTTTTAAAAACGCATGCTGAAAAAGACCCAGTTCAGGCCCTGTTTCTGGGCCTGACT # Right flank : CGATAGTGGGCACAGTGGCTATCTCGGTGCAAGCCTTTGGCGGTACATCACGCTTAACGGCAGTACCGCTTTCCACGTGCTGCGCTGCGATGATCCTACAACCACACACTTGTGAATTTCTGTAGGATCACCGCCCCGCGACCTACCGCGTCGCCTCCTCCAACAGGTACAGCACGTGCTCATAGCTCCGCCCGGTGATTTGCTCCATGCCCAGCTCGCAGGTGCGGTTGGAGGACACATAGGCGTCCACGCGCCCGTTGGCTTCGGCCTCGGCCAGCCCGACGCGCTCATCGCGGGTGGCGGCGTCGAGAAGTTCGGGGTGGAGCATGCCGCGGTCTCCGGCGGTGCCACAGCAGCCGGCGCCGCGGGGCACGAAGGCCTCCTCGGCGGCGAAACTGGCGACGCGCACGAGGGTGTCGCTGAGTTCCATGTGGGCCAGCGAGCAGTTCGGGTGCACGGCCACCCGCCCGAGGCGGCGGGTGGGTTCAAGGTGCTCAATG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGTCTATCAGGGGTATATCGAACTGAACCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 395778-393919 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQMO01000002.1 Corynebacterium sp. 20A NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 395777 28 100.0 33 ............................ TGCCGTGGCGTACACGGCTGGCAACAGGTCACA 395716 28 100.0 33 ............................ TGCGTAGCGACACCACGATCTGCTCAGCGTCGG 395655 28 100.0 33 ............................ GTCGCCGCTGGGTAGCGTGTTTATGGATAGCAC 395594 28 100.0 33 ............................ CGGAGCGCGCCGCAGCGGGAATGTTGTCAGCGG 395533 28 100.0 33 ............................ GAGAGAGAAACACACACAGAAAGAGAGAAAAAA 395472 28 100.0 33 ............................ GGATGATACCGAGTATGACACTGAGTGGATGGG 395411 28 100.0 33 ............................ ATCACCACCGGCCCCGAGGATGGCTGGAAACAA 395350 28 100.0 33 ............................ CTCCCGGTCCTTCTCCATGAAATCGCCGTAAGC 395289 28 100.0 33 ............................ GGAGACAGCTATGACCCCTGCTGAGCTTGCGCG 395228 28 100.0 33 ............................ CCTGCGTGGCGCGGACCTGCGTGGCGCGGCTAC 395167 28 100.0 33 ............................ CGCCTCGAATAGTATCTCGCCGGCCCCGTGTCG 395106 28 100.0 33 ............................ CCACGGATCAGGCAGTGGGCAGTGACTCCGCCT 395045 28 100.0 33 ............................ CTGCCTAAGGCGGTGGGGGATAAACTGACTGGC 394984 28 100.0 33 ............................ TGTGGAGTCGGGCGGCTACCCGTCGCGGGTCAA 394923 28 100.0 33 ............................ ATGCCCTGGTCTGGAGCCGCTCCGCTCTGGGAG 394862 28 100.0 33 ............................ GGTATCTAGGAAAATGTCGCGGATAATCTCCAC 394801 28 100.0 33 ............................ GACCTGCTTATCCGGCGTGGCTACACCGCCTTG 394740 28 100.0 33 ............................ GTGAGGAACTGGAGACCAACGCGGCTGATCTAC 394679 28 100.0 33 ............................ GGGATTTTGGGGCATGATCACCGACTTTTTCGC 394618 28 100.0 33 ............................ GAACACCAATATCCGGCGATCCCGCATCGATCC 394557 28 100.0 33 ............................ GAACATTCACGTGACTTTTGATCGCTCGCTGGA 394496 28 100.0 33 ............................ GGAGCTCGCGAAGAAGAATCAGGCCGACGGCGA 394435 28 100.0 33 ............................ CGTGGCAGTAACATACGAATCTTGGTTTTCGTC 394374 28 100.0 32 ............................ CTCCAGAAAGGGAGAAGAAAATGACCACCTAC 394314 28 100.0 33 ............................ GCTTCACGCATGAGCAGCGCGTTCGCCTCCGAA 394253 28 100.0 33 ............................ CTGACCTCTTTACCTCGCTGGCTGATCTAGACC 394192 28 96.4 33 ....................C....... CATTTATCAGTATGTGGCCGACTACATGGGCAA 394131 28 100.0 33 ............................ GCTCACACCCGACCACACCTCTGGCTCCCACCA 394070 28 100.0 35 ............................ CACTCTTATGCTGTGGGCTTTTCCCGAGCCGGCGT 394007 28 100.0 33 ............................ GCCCGGATTGCCTGGGATGCCGGTTTCTTCGCC 393946 28 92.9 0 ..........................TG | ========== ====== ====== ====== ============================ =================================== ================== 31 28 99.7 33 GTTTTTCCCGCACGCGCGGGAGTGGACC # Left flank : TTTTAGATGGCGGTAAGACAGAGCTATCTGGAGGGTGGCTTGCCGCCAATGGCATCGTATTCAAACGTATCCAGGACGCCCCGCCTGTCAGCGTTGAGATGATGCTTCACGCTAGTAAAGGATGGCAGACCTCCCCAGAGCTTGGAGCATCTGACCATCTTCTTGACCGGCTCTCGGATACAGCGCCCGACACGGTAAGAGTAGAAGAATACTTACCTATTACCGTGGGCATAGCCGTGTCAGGGCGCCCATTGGCCCAACACGGAGTTGCTCATCTCAAAGGCCGAAAGAGGTTTCTTCCGCGCCCGACATATCCAGTAAGTTTATGGACTCTAGAGGTTCTATCGAGGAGACACCGTGGTTCTGGTCTGATGGCGGAGGAGGTGACGCGCGGGAAATTTAAGACTGTTGCTCCACCGGTCGTAGTTTAGTTCTGTAAAGGCAAATAGAAGTTGAATCTATACGCCTTGTTTGCTCGTTAAACCTGCTGTTCGCAGAGT # Right flank : CAAGCTCCTGTGTTTGCCTAGCGAGCCAGTCGAGTTTGCCAAGGTCACCAAAAAGTGACTTATTGTGGAGCGTAAGGGGCATCGCAACGCAAGGTGTCCAGCTGTCACCTTGTTGAAAGCATGCATGAAGCATCGTTTCCTGAAGCGGTTGTGCCTTGGCAGCGGTACTGGTTTGTCCGCTGTAGCTTGTACGCCTGTGACAGGAATCGGTTGCTGGGCACTGAAGACTCTTTCTTACTGTGGTCGGGCTGCATATGGGCGGCCACCAATTACCGATCTAGATCTGAATACCACTTATCTAGCGATGTACCGATCCAGTTGAGTAGTTTTTCCAGAGCGTTTTAGGTGGAAATTTCACCGCTCCCGCGTTAACTACTCCGTGGTCGTAGCGATACTTCGTTTGCGCTTCTGTCTTGAGTACGGCGGGTGCCGTTTTCAGAAGTGTTCGAATGGACGGTAGAAAACATAGATGCGGCCCTATCCGACGAGGGAAACCTCGA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCACGCGCGGGAGTGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-10.90,-11.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //