Array 1 1013714-1015844 **** Predicted by CRISPRDetect 2.4 *** >NC_017068.1 Selenomonas ruminantium subsp. lactilytica TAM6421, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1013714 28 100.0 32 ............................ AAAGAAAAGATTAATCATGTCTCTGCCGTTTC 1013774 28 100.0 32 ............................ TGTAGCTTATCAGCCACTTTCTGCTGGCCTTT 1013834 28 100.0 32 ............................ TGAACAACGTTCGCTCGAACTCGAACAGCAAC 1013894 28 100.0 32 ............................ TCTTGCCTTTACGCGGCTACTATCATTGACAC 1013954 28 100.0 32 ............................ AACAGCCCCCACCGTGCCTGTGACCTTGCCTG 1014014 28 100.0 32 ............................ AATCCCTACTCCTGCCATAAATATGCCATACC 1014074 28 100.0 32 ............................ GTAATAATCAAGCGGTAAAAAGTCAATCCTGC 1014134 28 100.0 32 ............................ TGTTGAACCATCACCCAACCACACACCGAGAA 1014194 28 100.0 32 ............................ TTGCGAATCTTCGTCCATGAATTGCAATTTAT 1014254 28 100.0 32 ............................ AGCAGAAGAAAAAGCAAAGTTGGAGTTTGAGT 1014314 28 100.0 32 ............................ TTTCTCGCCTATCGCATGATAAGCCGCCTTAA 1014374 28 100.0 32 ............................ TATCGCGATGATTGATGCGAGCGTCAATATTG 1014434 28 100.0 33 ............................ CATCCAAAAGAAAATCGTCAGGACAACGTGGGG 1014495 28 100.0 33 ............................ CACTATTAATCGCTTGTTGAATAGCCGCCGTAT 1014556 28 100.0 32 ............................ AACACTGACGGGCAGCTGAAAAGCAAAACTAT 1014616 28 100.0 32 ............................ TGTCCAACCATTAAACAGACATTTTTCGACCA 1014676 28 100.0 32 ............................ AAAGCCTGCAAAGCATTGCTCCACTCACCAAA 1014736 28 100.0 32 ............................ CTTCAGCGCATTTTTGCTGACACCCGCGAGGG 1014796 28 100.0 32 ............................ TGCAACTTTCGATGCAGCAGCATCAGCCCATC 1014856 28 100.0 32 ............................ TGCTGCAACCATTTCTTATATCTTTTCCGACA 1014916 28 100.0 32 ............................ GTAATCAGACGGCCTACAATGCGGATGATAAT 1014976 28 100.0 32 ............................ AAAATCGGAAAAGTTTGCATTAGGTGCAGATA 1015036 28 100.0 32 ............................ GATTACCTCACGCCAGTCTGCGACGTGATAAG 1015096 28 96.4 32 T........................... GCATCCCGTGGTTCGGTCGTCGCTTGGCATCC 1015156 28 100.0 32 ............................ TTGCCGTTCAGGGACAGAGTTGTTCAATGGGC 1015216 28 100.0 32 ............................ TGGATAAGCGAGTCCAAAATAAAGCGGGAATG 1015276 28 100.0 32 ............................ TATGCAACGGCGGTGGAAATTCTGGTTGAGTA 1015336 28 100.0 32 ............................ ATTGTTTGCTCGACTTGATAAACAGGCATTAT 1015396 28 100.0 32 ............................ AGTATGGCTGAAATCATGGGCTTCCAAAAAGC 1015456 28 100.0 32 ............................ AAGAGCAGATGGAGAGGGTTCGATCGGAACGC 1015516 28 100.0 33 ............................ TTCGGCTCCGGCCGTACCATTGACCTGCCTGCC 1015577 28 100.0 32 ............................ TAATGTGCTTTTTTTGTCTGTCATTTTCCCCG 1015637 28 100.0 32 ............................ ACACATCAACTTGAGCACCACATTCGCACCTG 1015697 28 100.0 32 ............................ TTTACGCTTTGGGCTGTGTCAGAGTCCAACGA 1015757 28 100.0 32 ............................ AATTGCCACCCGATAACGGGATACGTTTAACA 1015817 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 36 28 99.9 32 GTGTTCCGCCGTATAGGCGGCTTAGAAA # Left flank : CAATTCAATAAGTTCCGTGAAGGTGCGCAGGATATAGAGCTATGTCTTAAAAAACAAGAAAACGGCACATTCTGCTTTTGTGAGCAGAATGAAAAAACAGGTGAATGGATAGAGCGGGAGGATTGGTATCATATCCAAAAACAAAAAGATGAGGAAAGTGAGCGCTTTTGGCTGCAGCGTGATTATCAGCAGGCATTGGCCGATTATCAGGGAGATTCCGTTAACAGTAAGGTCGCGATTCAGGCAGGAATTTTGCATTTGCCTGCGAACAGGGAAAAAACTGTGTGGGTGTATTCTGATCAGTTTGGCATGTATGATGAAAAGAAGGACTTTGCCACTTAATACAGAATAACATCTATGTAGGCGATTTTACCCAAATTTTGCTGGCTGTTGCGAATCCTTATAAAATAAGGGACTAACGAGATGTGAAAAAATAGGGTAAAATAACGGAAAATCGTTGTAAGGCTTCTGGCTGTAGGGGAAGACAGCAAGTTCTGCCA # Right flank : AAGGGGATTTTACTTGTCGATATTAAAAAATATAATAAAAACGAAGATAAATGACAGATAATATTGAACAATATAAATAAGTGAGGTGATGTTGATGAGTGTGTTGACAGATTATGTGCAAGCAGAATCTGAAAAGAAAGGTGTACCGCCCGGGCAGTGGCTGGCTGATACGGCTAAGAATGCCAGTAAGTGTCAGTTTGCTACGCATATAGGCCGTTTTATCAATCCGGATGTGACAGTCAATTGGCAGGCAAAGATAAATGGCAAACTGGATGATGTATATGTATCGACAGGTTCGGTGGCTTGTTCACCGGATATTTTTGTGGCGGCTAATTATTTGGCAACTGCCAGCTTGCTTCAATTGCGTTTGGAGGACGGAAAAACTTTCTACGAGCATTTGCAGGCTGCGGATGATTGTTTGCGGGAAGATTTTCAAATCATGCAGGCGGATTATGAGCAGGTGCGTGAAGATTTGTTGACTGTAAAGTCGGATGTGTTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCGCCGTATAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //