Array 1 112159-117469 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEVFH010000002.1 Psychrobacter pacificensis strain E23 contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 112159 28 100.0 32 ............................ ACGCCAAAGGCATTGCCGTTATTAGCAGCAAT 112219 28 100.0 32 ............................ GCATGACGCTGACCACAAGCGACTATCCGACA 112279 28 100.0 32 ............................ AGCCGATGATCAGGCGCTCAGTTTGGTTGAGT 112339 28 100.0 32 ............................ ACCGCCGAAGGTCGTGACGGTGACTTCTTTCG 112399 28 100.0 32 ............................ GCCTTTAGTGTTTGTGCAGCGCATTTTTTGCA 112459 28 100.0 32 ............................ GCGCCATAAGTGTATCGTTTACTATAAGCGCG 112519 28 100.0 33 ............................ AAGCAAAGACCAGTAGTGAGAAAGCCGTTTATG 112580 28 100.0 32 ............................ GATAACTTCTTAAACGCTGACGGTTTTATGGC 112640 28 100.0 32 ............................ TTTTGCTATCTCAAACGGCTCTACGACCCACT 112700 28 100.0 32 ............................ ATCTGTATAAGTAATCACGACGGTATCAGGCT 112760 28 100.0 32 ............................ TCAAAGCCAAAGTCTTTGTTTCCATCGCCACA 112820 28 100.0 32 ............................ ACTTGATGTGACTCAGGCACTTTGAAACTTTC 112880 28 100.0 32 ............................ TTACACGGCAACAGATGAGGATGGCGAAAAGG 112940 28 100.0 32 ............................ TGGTCATTGTTGCTCGCTTATCGCCTGAATTT 113000 28 100.0 32 ............................ GGCATTAGCAACCGCTTCTGTGACCTGCCAGC 113060 28 100.0 32 ............................ GGCGCGCCAAGTGTGTTAGTTGCTTACGGTAG 113120 28 100.0 32 ............................ TCACCAACTAGCTGATACAAGTTACCTAAACG 113180 28 100.0 32 ............................ AAGATCATCAATTTTGCTAAGCATTACGCAGC 113240 28 100.0 32 ............................ GATATCGATTTTGATAGAAGTTACGTGAGAAT 113300 28 100.0 32 ............................ TAAACACCCTATTTCCCTACTACGGAATGAAT 113360 28 100.0 32 ............................ AGCAAGAGGCTGAATTACACGGTCATCATTGC 113420 28 100.0 32 ............................ TTCAGACCGGGGAATCGTATTTCATGATCGAT 113480 28 100.0 32 ............................ GTGCTGCGTTGTGGCTTGCTGGCTGGTGATTG 113540 28 100.0 32 ............................ CATAAAGAAAGCCCGCTGCGGGGGGCAACGGG 113600 28 100.0 32 ............................ GTTTGCCATATCACGTCCCATACGTTCGTTAT 113660 28 100.0 32 ............................ GCCAAACCGATCCTCGTTGTTACGAATACGAC 113720 28 100.0 32 ............................ TTACGTTTGAGTGTGTTGACTACTCATGCCGT 113780 28 100.0 32 ............................ ATTGGTAGCAGGTACGATGGTATGGATTAGCA 113840 28 100.0 32 ............................ GCGCACAGACCACCTGCTGTCGAAAAAACCCA 113900 28 100.0 32 ............................ TGCGTATGAGGACGAACCTGCCAGCAATAGCA 113960 28 100.0 32 ............................ TGCAAGACGCACGCGAACAAGCCATGTCGTTA 114020 28 100.0 32 ............................ AAGAGATTAACGGTATCAGTGAGGACTACGCT 114080 28 100.0 32 ............................ TTACCAAACACTCAAAACGACTGTTTTCAAAG 114140 28 100.0 32 ............................ GTGGTATAGCGCAGAGTATGTGTATAGCGAGG 114200 28 100.0 32 ............................ TTTGCCATGTCAGCCTCCTATAAACCCACATC 114260 28 100.0 32 ............................ GAGCAAGGGCGCTTGATGTACTGACAAATAAA 114320 28 100.0 32 ............................ AGCTGTATGATTCGCATACAGGCTCATCTCAC 114380 28 100.0 32 ............................ GACACTGCTATCTTACTAGGTATGCTCATTGT 114440 28 100.0 32 ............................ GTCAAGATTTGTCGCGATATATCCTCTAAATC 114500 28 100.0 32 ............................ AACTGAGTTCGGCGTCTGAGTACAGTATTGCG 114560 28 100.0 32 ............................ ATGCTTGGTTTACCGCAATGATGGCATCGATA 114620 28 100.0 32 ............................ AAGAGCATAAGCCTGATTTATTGATTGAGTTT 114680 28 100.0 32 ............................ ATACCTGCAATATATGCCGTCCTTAGCAACCC 114740 28 100.0 32 ............................ TTTACCATTTATAAGAACTGGGACACCCTAGG 114800 28 100.0 32 ............................ TTGCGGATTGCCTGGTATGCCTGTTTCGTGAT 114860 28 100.0 32 ............................ GTCATCATGGCATTGTTGTTGCGTCCAGTTGT 114920 28 100.0 32 ............................ GTAATCGTCAGCATCGTTAAATTCCGTATCTA 114980 28 100.0 32 ............................ TGAGTACGATGCTAAGTGTGAGGAAAACGCGG 115040 28 100.0 32 ............................ GATAAGCAAGTCAGCATGAGCGAGCTCGCAAA 115100 28 100.0 32 ............................ TTCAAGAAGACAATGGACGCCAACGCATCAAA 115160 28 100.0 32 ............................ GCACATTAGCCCCTGCGGCTGGGTAAACTCAA 115220 28 100.0 32 ............................ AGTGAGCGACAAGTTGCTTGTCCTTCCTTAGT 115280 28 100.0 32 ............................ GCAAGTCGTTATGATTAAGCAGGCGGCTAAAG 115340 28 100.0 33 ............................ TTCAGACTGCGACTCGCCGTATTTGTTACCAGC 115401 28 100.0 32 ............................ TCTACTGTGTCAGCCTTTACTTTGGTCACGTA 115461 28 100.0 32 ............................ ACATTCACACACAAGAGCAGAAGCAGGGACAA 115521 28 100.0 32 ............................ AACCCCATTTTCGTCCATAAGGTCTTGCCAAT 115581 28 100.0 33 ............................ GTAAATATCGGAAAGTCAAGAAAGGCGGCGGGG 115642 28 100.0 32 ............................ AACAGTCGGAGCATAATTAACAGTAGATTGTA 115702 28 100.0 32 ............................ ACGACTGATCCTGATACTGGCGAAAAATCGCT 115762 28 100.0 32 ............................ CCTATCGAAAACGAGCGCCGGCTCCAAAGTTT 115822 28 100.0 32 ............................ TTACAAGCGATTTATCATGTTCTGATAATAAA 115882 28 100.0 32 ............................ TTCTTGAGTATCCGTAGGATTAATATATTTAA 115942 28 100.0 32 ............................ TTTACGGGCAATCATACCAATGATAATACCGA 116002 28 100.0 32 ............................ CGAATAGGTTTTGCAAGCGCTAATACGTTTAA 116062 28 100.0 32 ............................ GAAATATGAGGAAAAGGACGGCACAAAGGTTC 116122 28 100.0 32 ............................ TTGCGAGTCCAACAAAGGTATTTTTCTACCGT 116182 28 100.0 32 ............................ AGCCAAACCGCCTACGTCTGCCAACGTGGGCG 116242 28 100.0 32 ............................ ACACCGATAGCGCGTAGCATCTCTTTTATCGG 116302 28 100.0 32 ............................ AACGCTTGCGGGTTTTTTGGCTCAATGTCAAT 116362 28 100.0 32 ............................ CCGAAGCCCCAACTGATACTGGCGTTATAGTA 116422 28 100.0 32 ............................ GATATTGAGTGGGATGAGATCGAAGCGGATGA 116482 28 100.0 32 ............................ AGCAGGTAAGATAATCGCTTCACCTTCTTTGA 116542 28 96.4 32 ....A....................... TCATGGTCTAAGACGTATCGCATGGTCAAAAA 116602 28 96.4 32 ....A....................... ATAAGCAAATAGAAAGTAAGAGCAATGATAAA 116662 28 92.9 32 ....A.T..................... TGTATGATCTCATCTAAGCGAGCAATAACGGC 116722 28 100.0 32 ............................ TTTGATAAGCACGCTCTTGCTCGCGTCATGAT 116782 28 100.0 32 ............................ TTAAAAGCAAAACAAGATAAGAAGCTGCCAGT 116842 28 100.0 32 ............................ ACCACCTTTGGAGTCTTAAATGGTAAATCGTT 116902 28 100.0 32 ............................ ATCACACAATCTATTATGCAAGGGGAAAGGCT 116962 28 100.0 32 ............................ ATCAATAGCGGTGTCGGCTGGCGGGTTGTATA 117022 28 96.4 32 ....A....................... GCCAAAGTCAGACTGCTGCGCGGCAAACGCAT 117082 28 96.4 32 ....A....................... CATAGTGGCGATTTTTTTATGCGTCAGATTTT 117142 28 96.4 32 ....A....................... GTGGTAAAACCCTGCGTTTGCTAACGCTGTCT 117202 28 96.4 32 ....A....................... TCATGAGGATTGACTAGGTTGTCGTTTGGATA 117262 28 96.4 32 ....A....................... TCAAAGAAGCTAGCAAGCTCTTTATCTGTTGA 117322 28 96.4 32 ....A....................... AGTTTGCGGCTCAACGTAAATCACATCATCAG 117382 28 96.4 32 ....A....................... ATCCAAACGCAGTAGTTGCACTGGCACATGGC 117442 28 96.4 0 ....A....................... | ========== ====== ====== ====== ============================ ================================= ================== 89 28 99.5 32 CTTCCTCACCGCATAGGTGACTTAGAAA # Left flank : GATTATGTGCATATCAAAGGCATCAAAGAAGTACCGATAGACAAAGCCACTGGCTATGTCAGTGTACATCGTTACCGCTTTAAACCTGCTGATTTGCAAGCGGACTCATTAGCAAATAAGCTTGGCGTCAGTTATGAAGACGCTATGGCAACCGTGAATAAGCGCGCACCTGAAAAGGCTGTGCCTTATATCCAAATGCGCAGTCAGACCAATCAAAGCAATTATCGTTTACGGGTGCTACAGCTACCTTGTGATGCACCAAAGGCTGGCAATTTCAATACTTACGGTATGAATGGCATGTCTGATCATGTCACCGTACCGCACTGGTAAAAAAGTCGTTACGCGCGACCCAGAAAGAGGATATAAAAACCCTTTTTTTGAGATATTTAAAAACTTGCAATAAAATCAACCAGTTATAACAGAGTGAAAAACGGAGGGTGAAATAAGGTATTTTGACCTCCACGCCTTGTTGTAACTAAATTTTTTGAGGTATAATTCCT # Right flank : ATTTTGCTATGGCTGCTCCTGATAGTGTGTAGTGGTCAAATATTTTTAGACAGTACTTAAGAGGTTTTTGTTGAAATAAAGTCTCTCTTTCTCGCTTGGTGTTAAATACTCATTAAAGCTGTGTGGTCTTACACTTTGATAATAGCCCCAAATATAATCATTTACTGCCTGCCGAGCCTCATCAATATTGTCATAGCCGTTTTTTGGCATCCACTCTGTCTTAAAGCTTCTAAAGAACCTCTCTGTAGGTGCATTGTCCCAACAGTTGCCTCGTCGGCTCATACTATGCGACATACCATTGCACTTGGCTACGCATTTAGCATACTCTTCACTGGTATAATGACTGCCTTGATCTGAATGAAACAGCACGCCTTTAGGCTCAAGTCTTATGTGATATGCCATTTTTAGTGCAGATGTGGTCAGCTGGGTATTCGGGCTATCTGACAAGGCAAAACCAACGATACGTCGAGTATATAAATCCATAACGATGGCTAAATAAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCTCACCGCATAGGTGACTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTCATCACCGCTCAGGTGACTTAGAAA with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //