Array 1 73952-76297 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXTV01000017.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain BCW_3304 NODE_17_length_132299_cov_3.01425, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 73952 29 100.0 32 ............................. GCGATCGGTCCCCGTACTGGCGGGTAAATCAG 74013 29 100.0 32 ............................. CGTAATTGGTAGTTCATTAGCTCATTTCATAT 74074 29 100.0 32 ............................. GCATTGATGTAACACTCCTTAACTGCGGCGGC 74135 29 100.0 32 ............................. GAACAGATCGCGCTCGGCGACGCGGCGGTTAT 74196 29 100.0 32 ............................. TGATTTTTTATTACCACGGTGTGCCTTTTGGA 74257 29 100.0 32 ............................. ATCGACGTGTACAAAAATGATGCAATTCGTTT 74318 29 96.6 32 ............................C GTAGAAGACGACGTAACAAACCGCATTTACAA 74379 29 100.0 32 ............................. CTCCGGCGCAACCACTTGCTTAACGTCACTTG 74440 29 100.0 32 ............................. CTATCAATGTGATTGCGTTGTCCTTACCGGCG 74501 29 100.0 32 ............................. ACCGCAGGCGAATTCTGGAACAGGCTGCGGAA 74562 29 100.0 32 ............................. CTTAAAAGAGATGTGCTCTCTAATGGGGTTAT 74623 29 100.0 32 ............................. GGTTCAGCGTAGCCCGACCGCTGTAAGCGGTC 74684 29 100.0 32 ............................. CTATTAGCGCGGCTGGCACCCGTGCCGCGCTC 74745 29 100.0 32 ............................. TTTGTTTAAATAACGGAGACATGGCCAATGAA 74806 29 100.0 32 ............................. CAAAATGCCTCGGGTAGGGTAATGGGGTGAGT 74867 29 100.0 32 ............................. TCTCGCCGTTAATCGTTATGTCACCTGTACCG 74928 29 100.0 32 ............................. GGCATGCGCGCGGAGGCATACGCGATGTTTAG 74989 29 100.0 32 ............................. GGGAATAAGCACCCGGGCATTCCCGCAAAACC 75050 29 100.0 32 ............................. GGAATGCGGCTTATGCTGGTGCAAGCCAAGTA 75111 29 100.0 32 ............................. TTCTGGCAATGGTCTTATTTTTTGAGGTTTAG 75172 29 100.0 32 ............................. ATCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 75233 29 100.0 32 ............................. TTTTCAGGTCTGCAGCGGAAGTCAGGGGAGAG 75294 29 100.0 32 ............................. ACCAAAGGGGTTTTTCCACGTATCGCCGCTGC 75355 29 100.0 32 ............................. CGATATGACTTTTCCTGTATATCTAATAAAGA 75416 29 100.0 32 ............................. CGCTCTCAATATACGACGCGCCTTTAATTGTT 75477 29 100.0 32 ............................. GAGTGAGCATGGCTAAGACACAAATGCAGTTA 75538 29 100.0 32 ............................. CGAAATGTCGCGGTCGCTGGCTTTAATCCAGC 75599 29 100.0 32 ............................. CGGCGCGAACGAGATGATCCAGCGCGAATCGC 75660 29 100.0 32 ............................. CCGGCAATCTCCGCGCCCTGATAGTCAGCGAA 75721 29 100.0 32 ............................. CCGGATGGACCTTCCTTTTCAGGTCCATATAA 75782 29 100.0 32 ............................. GGAATCGTCTTTTCAATGGGCGCGGGAAATGG 75843 29 100.0 32 ............................. CGAAGGGAAGCTAACGGCTGAAAAAGTCGTAA 75904 29 100.0 32 ............................. CAAGACCGCAAAGAGGCGCTGAATCATGAAAA 75965 29 100.0 32 ............................. GTGAAATTGAGCCGCTTCAAGGGCTTCGCATC 76026 29 100.0 32 ............................. ACGTCGAGATATATCAGTCTAAAAGAAATGTG 76087 29 100.0 32 ............................. GCGAAATTCCCCAGATACCGCGCATCGGCACT 76148 29 96.6 32 ............T................ GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 76209 29 96.6 32 .............T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 76270 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 39 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTTCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTACGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 84430-85740 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXTV01000017.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain BCW_3304 NODE_17_length_132299_cov_3.01425, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 84430 29 100.0 32 ............................. TTTAAATAGTGGGGTGATCCCGGTGAAAATCC 84491 29 100.0 32 ............................. CGGGAAGCGCAGCAAAACGCCCGGTCGCAGCG 84552 29 100.0 32 ............................. GTGTCCGCCTGCCTTGATTCATGGATGGAAAA 84613 29 100.0 32 ............................. GTCGGGTGGAATGCCTGTCTGACATCAATTTT 84674 29 96.6 32 .............T............... TGCTAACTGGTTCAGGCCAGCAATAACGTTGG 84735 29 96.6 32 .............T............... CGCTGCCGGCTTAAATACGTGACGCATAGTAG 84796 29 100.0 32 ............................. GGCCGGTTTCCAGAGAATCAGAAGAGTATTTC 84857 29 96.6 32 ............................A TTAACGGAGGTCGCCCCATAAGGGGCGATAAC 84918 29 100.0 32 ............................. GGGCACGCGGAGGTCTACGGCGAATATATTTA 84979 29 100.0 32 ............................. TTATCAGTTGAACCCGATGACGACAGCAGCTA 85040 29 100.0 32 ............................. GCGGCTATGTCGTAACATTCCCGGACATCCCC 85101 29 100.0 32 ............................. GTCTTTTAACGTAGCCTCCAACTGACTGCTTG 85162 29 96.6 32 ............................A AACTGCTGAACAAACGCAGCCGTAATTCTGTC 85223 29 100.0 32 ............................. GCCCGTATATGGATTTAACTTTATCAGCGGCT 85284 29 100.0 32 ............................. TCACTCTTAAATTCCTGAATACGATAGGCTGT 85345 29 100.0 32 ............................. TATGGTCGCTGGGTGTGGTTCATCTTGCCTGT 85406 29 100.0 32 ............................. GTGTTCGTCATCTTAATTGTCAACGTCCCACC 85467 29 100.0 32 ............................. TCTTGGTTTTGGCGCGTCGTTTGTGCACAGTG 85528 29 100.0 32 ............................. ATGATGATGCGATGAGTTTCACCATTAACAGC 85589 29 100.0 32 ............................. GGAACATATCCGGGATTAACCGGAAACCTACG 85650 29 100.0 32 ............................. TTAGACGGTCGGATCGTGGGCAATTATCCGTT 85711 29 100.0 0 ............................. | A [85738] ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CATCTGGACATTGGAATGTACCAGAATTTTTTTGCCACCATGATTTTCGGACGGATAAGCGACTTTTTTCCCAGCAGAAATCTATTTCATCAACTAAAGGGCGTAGCTGTCCATCAATGTCTTTTCTCGCGAGATAAACATCAACACTCTCTTCACCCAGACGGGTAGAAAATTCTCTATCTTTATCCCATAAAAAGTCGCTGGCTTCTCGATCGTAACCGAGATCGTAACGTAATAAATTTTGCGCAGCCACTGAACGTTGGCTAAGGACTTTGCCAAAGGCAACGTCAGAGATCGTCTGCAAGCCTGCTGGCGCAGCAATTTTCTGCTCGTATACGCCGTCAACGAGTGCTCTGGCATTATCCGGCATACGGATCTCACCATGTTGACGCAGCAGCGCCTGTGTACGCCACAGGCAGGCATGATCGGCGTAAACAAAGCCGGTACCTTTTAGCTCTTGCCCCAACCAGCCCTCTTCTGCCTGCTCCTGCCAGTGAGGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //