Array 1 99237-99986 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADFDR010000013.1 Burkholderia plantarii strain LMG 9035, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 99237 28 100.0 32 ............................ TTCTTGCGCCGGGCCTGTGGCTTGCGCGGTGC 99297 28 100.0 32 ............................ GTAACGATCGTCGTTGCCCTTGATGAACTGAT 99357 28 100.0 32 ............................ TTCATGATGAAGTCGTTGTAGCTGGGAAGGCC 99417 28 100.0 32 ............................ ATCCTGCACCTCGCGCGCGAGCAGGGGTGGAT 99477 28 100.0 32 ............................ GCTGACGGGCAGACATGAAGCCGATCCCGGGC 99537 28 100.0 32 ............................ GCGATGGAGAATCGAAGCTGCATCCAATGGGA 99597 28 100.0 32 ............................ GCGCTCGTGCTCGAGCTTCAGCACGAACGCAC 99657 28 100.0 33 ............................ GTAACCCGCGCGCGGTCCATCCCTCAACGAACC 99718 28 100.0 32 ............................ ATGTCGTACTTGGGAAAAGGGGACTGCTGTCT 99778 28 100.0 32 ............................ TACCGGGCGAATTTCGGTCAGCGCGAGCTGAT 99838 28 100.0 32 ............................ GACTGGCAATTCTGGCGCGATACGACGCGCGC 99898 28 100.0 32 ............................ TTCCGCCACGTCCGGCTCGGGCGCGTCGAATT 99958 28 82.1 0 .......A.....C.......GC.A... | T [99984] ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.6 32 GTTTGCTGCCGGATAGGCAGCTTAGAAA # Left flank : GCGCAGCACTTCCGACGCGGTTTTCACCAGCGTGCGAAACGCGGCCGCGTCGAGGGGCTTCGGATTCTTCTTGTCGCGACCCATCGTCCAGGGGCCGACCAGCGCCGGCTCGGCCTCGCCGTCCTTGATCATCGCGACAGCCCAGCCGTCGTCGTCCTCGTTCTTGATCACGCGTGCCGTCCAGCCGTTGTCGTGCCAGAGGCCGTCCTCGTGGATCGGGTTGTCGTCCCGGGCTGCGTCGGTGTCGGTGAGGTGGTCGGTCATGAGGCTTCGGCTTCGGTTCGGGGGCTTGGGTGGGCGCGTATTGTAAACGTTTCGATGGGCGGGAATGGGGCGGGGTGACGCGGGTGGTTGGGGTGGTGACCGGTGAACCCTTTTTTCGGCAGAATGCGCGAAGGGTTGGAAAATCAATGAGTTGGCGAGGGGGGGGAATTTGGGGTGGCGGAGCGGAGTGATGGGAATTCGTTGTTGAATCAAGGAATTAGGGGATTTTTTGTCCA # Right flank : ACAAAAAGACAACCAGACACATCCGGAATCCCCCGTGTGAGGCGGATTAAGAATCAGACCTCGACGTTGAATCGCTCCCGGGTAAAGCAGTGCAAACTGCGTCGTCGGACGTTTCCATTCGTGCCGGGAGCCGGCCCATTTCGCAACGACGTTGCGCAGGGCCAACCCAATCAGTTTGAGCGGGGCCTGCCCGAACCTTTCCACGCTTTTTCAGGGGATCAACATGACTCGGCAACTTTCATGGGCTGACGCAACGGTGCGCGACGAACTGGCGGCACTGCAACGCGCACAACCATTCGTCTACGGCCTGACCAACTACATCGCGGCCAACCTCAGTGCAAACGTGCTGCTGGCCGTGGGGGCCGCACCCGCGATTGGCGCCGCGCTGGACTGGCCGACCTGCTTCGCTGCCGCCGCAGCCGGGATGTGGGTCAACGGTGCCGCGCTGATCAGCAGCGCACCGGATACGCTCGAGACGGCCGCCCGGTCGGCACACGAAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 110243-111531 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADFDR010000013.1 Burkholderia plantarii strain LMG 9035, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 110243 28 100.0 32 ............................ GTCGACGTCCGGCAACTCAGGGCCGAGTTCGC 110303 28 100.0 33 ............................ CGAGATCGCTGCTCGCATGCTGGCCGAGCGCTG 110364 28 100.0 32 ............................ ACCACGCCAGAATGCTCGGTGGAACGACAAGG 110424 28 100.0 32 ............................ TCGTTGCGGATCATCGAGGAAGCAAATGCGCA 110484 28 100.0 32 ............................ TGAGACCACACCATGAAGCCATATGTGTTCAG 110544 28 100.0 32 ............................ ACGTCCAGCTGCTTCGCGGTGAGCCAGCCGGT 110604 28 100.0 32 ............................ ATATTGGAGACGGTATTGGGGGTTCTCCAATA 110664 28 100.0 32 ............................ AATGCGGCCGGACGACGAGACGGTCAAGGCCA 110724 28 100.0 32 ............................ TGGCCGCCGGCATCGATCACGACGTGGTCATA 110784 28 100.0 32 ............................ ACGCATGCGGCTGTATCTGGCGGCCGGCCGAC 110844 28 100.0 33 ............................ TTCGTACTTGCGCTCCCACGCCATCTGACGCAT 110905 28 100.0 32 ............................ TCGCAGATGTCGGGTGAATGGGTTGCTGCGCC 110965 28 100.0 32 ............................ TATGAGGCTTGCAAGCGCATCCGCGAAGTGCT 111025 28 100.0 32 ............................ TTCCAGTCCTGGCGCCCTTTGCGCTCTTCCTC 111085 28 100.0 32 ............................ TAGATCCTGCATTCCTATTCACGTTCCTACGC 111145 28 100.0 31 ............................ TCGATGCTCGCTACTTGATCGGTTGGATCGG 111204 28 100.0 32 ............................ GAGCACCAGCAGATAAACGAAGCAGACGCCGA 111264 28 100.0 32 ............................ CATGTCGAACCATTCTTCCGGGCCGCTCATGC 111324 28 100.0 32 ............................ TTGCCGACGATCAGCCAGTAGTGGCTCGTCTT 111384 28 100.0 32 ............................ TCGCCGGCCAGCCATGCCGCGTCACGCCCCTC 111444 28 100.0 32 ............................ TTCAGCCACATTGCACGCCGCCACCCACGCAC 111504 28 96.4 0 ............A............... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.8 32 GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Left flank : TGGGTTTGCGCGAACTGATGGCGCAGCCATGGTTGCAGGGGATGCGCGATCACGTTGTGGTGGCCGAAGCGGCGCCGGTGCCGGCGGGGGCGACGCACCGGGTTGTGCGGCGGCGCCAGTTCAAGACCAATGCCGAGCGCTTGCGCCGCCGCCGGATGCAGCGCAAGGGGGAAACCGCCGAGCAGGCCGCGGCGCATATTCCCGATAGCGTCGAGCGGCGGCCGGATCTGCCTTATGTGCAATTGCGCAGCACGAGCACTGGGCAGGGGTTTTGCCTGTTTGTTGAGCAGGGGAATGAGGGGCGGGAGGCGGTAGCGGGAGCGTTCAACAGTTACGGGTTGAGTCAGGGCGCGACGGTGCCGTGGTTTTAACCCTTTTCCGTGGCCGGAAAAGGAGGCTTTAAAAATCAATGGGTTAGCGAGGAAGCGAAAATTTGGGTGTTTCGCTTCCTTGGCAGAGTTTTGCTTTTGGAAACATGGGGTTGGGTGGTTGGGAGGGTA # Right flank : AATATCGAATGGCCGATTCCAAAAACTTGGATGATGGACGCCACCTGCACTGGCTGACCTACAGCACCGGCTACGTGCATAGCCTGCAGTTGGGCATGGCAAGGCTGGCTGCGTGAACAAACCCTAATGCGCGCCAGCATCGTCGAAGCTGAGCTTGCGCGCGATCGTGAGCCCGGCCGGCGAGCTGAAATCGAGCCGCACCAGCCACACGCCCGGCATTTCGAGCGCGAGGCGGGCGTGGTAGACGCCCGGGTCCGCATCCGGCACGGCCGCCACCGGCGTCACGTTGTGCGCCATCGGCATCGACGGCATGTCGGCGCTCACCGTGAAGCGCGCGTCGCGCAGCGGCGCGCCGCCGGGCGCGGCGAGGCGAATCGTGCAGTCATAGGCGCCGTCGCCGCCCGCGCGCGAGCAGCCGATGCGTGCCGCGGGCGGCGCCGTGGCCGCATTCGCGAACAGCGGCGCGATCACGAGCGCAATCGCCACGATTGATTCGAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //