Array 1 157103-157496 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCXB010000012.1 Streptomyces sp. SF28 NODE_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 157103 28 100.0 33 ............................ CGCCCCCAAGACCGCGAGGGGCCAGTTCAACGC 157164 28 100.0 33 ............................ CGACGGCCTCGACCTGGTCCTCGACCTCGGCCG 157225 28 100.0 33 ............................ CCAGCAGGTCCAGGTACGCGATTGGCACCGCGA 157286 28 100.0 33 ............................ CGCGATGATCGCGGCGACGGTGCCGGCAGACAG 157347 28 100.0 33 ............................ CGAGCCCCGGCATGCTTCTCACGCCCTACGTGG 157408 28 100.0 33 ............................ CTCGCCGGCGGCCTTGCATTCCTGCACGATGAT 157469 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 33 CCGCTCCCCGTGCCTGCGGGGATGAGCC # Left flank : CCTTCTTTAGGCTGGAGCAAGGCGTCCAAGCGCCGCCGCTTCGGCAACCGGGCGCCGTAGCTTCTTGGCCAACGGGCCGACCTTCCGGTCGTGCTTGCCCGGGTGCCCGTACCGACAGCGGCCGTGCGGTGGTGTCCGCTGCGCGCCGCGACTCTGGCGAGTTCGGGTTTCGGCTCTTGGCGGCTTGTACGCCGAGAGCATCCGTTCCTAATGCCGAACGGTGGGAGCCGCCCGTACCTTCCTGACCATCGGCGTACCACGAACTGCCTTGCGCACGTGCGGGTTCAGTCGCGACCCGAAGCAGGGTAAGCCGCGCTCCTGGCAGGGCATCTTTGGGGGCGGAGTCCATGGCAGCCTCACCCGGGAAACCTCGGTGTGAACGCGTAGCCTGTGTCGTGGAGGCATCTGACCGAACGCATTCCCGTTTGCCCCGTATGTTCTTTTCTCTCATCCTTGCTGAAACAAGCGTCGCCCCTTGATAAAAGTGCAGCTCACGAAGA # Right flank : CGCGGTGCAGGACTCCAGCAGCGGCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCTCCCCGTGCCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 43431-43159 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCXB010000031.1 Streptomyces sp. SF28 NODE_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43430 29 100.0 32 ............................. CTGCGAATCGGCACGGCCGATTCCGCCGCCGG 43369 29 100.0 32 ............................. CGCCGGCACTCGCCCCCGTCCCCGCCCAGGTC 43308 29 100.0 32 ............................. ACGAACTCCTCGGGATCGACCTCGGGGAAGGT 43247 29 100.0 32 ............................. GCTGCAGTGACCGGCGGGAGTTGACGAGGTTC 43186 28 89.7 0 ......................C.C-... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.9 32 GTGGGCCCCGCAGGTGCGGGGATGTTCCC # Left flank : GTCGGATTCGATCTTCTTGAGCCAGTCGGTGCTGCGACCGCAGAGACCGGCGAGGACGGGCCGGCTCATTCCGCGGGACTCGCGGAGAAGGCGAAGCCGTTCCCCAGCCGAGAGGTCCGCGGGGATGTCATCAAGGTGAGGCATACTGAACTCTCCGTTCTGACCTAGGCATTCAGAACGGTACGCCGTGGGTGCGCCCCAGGCGTAGTGAACGGCCCCCACGTATCCCCGTGGGGGCCAGCTTCGCGTGTGGCTGTCAGCGTGCAGCGATCTCGTACGCGGTCGGCAGCATCGCGGCACGTCCCGTCAGCGCCCCTACGGCCGGAAGCGGCCACCGCCCACGCCGAACTCCTCGCCGACGGCTTCTCCTGCCGCACCCAGCTCGAACACCTCACGGGGCGGCGAGGGCGCCACCTTGCGGAGGGGGTGGGGGTCGGGGTGCCCCACTGCAACTGGAGGAAAATGACGTGGGGCGCGAGTAAAGTCACAGGTCAGGGAGT # Right flank : TCCGTCCGCGCCGCCCGGTGCCGGTACGTCTACGGCGCCGGGGGCCGCGGGCTCCACAGCTCTCAGGTACCGGGCCGTAGTGGGCCGCACCACCTCCCCTCCCCAACCACCTCCCGCGCCAGCCGCAGCAGGTCCGGGATTCGCGGATGGCCGGGGCCGTCGCGCCGGGCGAGTACGACGGGGACCGGCGGGGCTTCGGGGAGGGGGACGTAGGCCCTGGCCGGGTGCGGGTGCATGCGGGCGGTGGCGGTGGTGGTGATGCCCACCGCGCGGCCGCCGGTGATGGCGGCCAGCCAGTCGTCGGTGTTGCCGATGGTGATCGTGGCGGTGGGGCGGCTGTCCATGGGCCACAGGTCGAGGGTGGTGGTGCCGGAGACGGTGTTCAGCACGAGGGTGCGGCCGGTGAGGTCGGCCAGGGTGAGGTGCGGGCGGCGGGCGAGCGGGTCGTCGGCGGGCAGTCCCGCGACCCGGGGCTCGGTCGTCAGCCGTTCGGTGACGAG # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGGCCCCGCAGGTGCGGGGATGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 47078-46866 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCXB010000031.1 Streptomyces sp. SF28 NODE_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 47077 29 100.0 32 ............................. TCGGGCGTGGCATAAATCCTGTCGATCCGCAG 47016 29 100.0 32 ............................. GGCCACTACACCTTCGACGCCATCCAGGAGTC 46955 29 100.0 32 ............................. ATCGGCATGGGCGCCGTCGTGCTGCTGATCGT 46894 29 93.1 0 .....................A......G | ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 GTGGGCCCCGCGGGTGCGGGGGTGTTCCC # Left flank : AGCCCCCGCGCATCGACCGCCCCGCCGTCGGCCAGACGCACTGCCACCAGCACGCGGTACTCGGCGAAGCGGCCGAGCGGCGGCTACGCGAACGCGCGGGCCTGGAAGGCGAGTTGACCGGCGGCTGCTGCGGCCTGGCAGGCAACTTCGGCTTCGAACGCGGCCATTACGACGTCTCCGTCGCCTGCGCCGACGACCGCCTCCTCCCCGCCGTCCGCCAGGCCCCCGCCCACGCCGAACTCCTCGCCGACGGCTTCTCCTGCCGCACCCAACTCGACCACCTCACGGGGCGGCGGGGGCGACATCTGGCGGAGGTGTTGGCGGAGGGGCTGGGGGAGAAGGCAAGCCCGCCGGGCCGGTGAGCCGCGGGCGGAATCGGGCGCGCAGGTTCGGCGCCGGTACCCGCCCCCTCCTGCTACGCGGGCATGCAAGCGCCCTGTGCCCAGGCTCAACTGAAGGAAAATGACGTGGGGCGCGAGTAAAGTCACAGGTCAGGAAGT # Right flank : TGCCAGGCGCGCAGCTTGCCCTCGACGCGACGGGTGCATGCCTCGCAGGCGTGCAGTGGGGCGTGCTGTCCGTCCCACTGCGCCGGCCCGAGCCGCAGCACCCGGAATCCGGTGCGCTGACACCACAGCCAGCAGTCACCAGGGGGTCATTGCCTGTCCATGAGGTCGGCCTCCTCCAGTTCTCCGACCGAGCGGTGCTACAACTCCCGGTGCAGGGGCCCCCTTTCACCGAATGGTGGCTTCTGCATTGCCGTCGGCTTGCAGTACCTCTCGTGGGCGTACTGGACCAGGGCACCCCCCGTCGGCCGGTCGTGGACGATTTCGCGGTACCGCTCAGTGGCCCGGATTGCCTTCTGGCATCGGCAACAGGTCACGGTGTGGTCCCTTCGGTGCTGATCGGGCGGTTGCCCACGCGGAAGGCGTGGGCGCGGTTGGCGCGGGGGTGCGTCTCGACGGTCCTGTCCCGCAGGGGCTGTTGCGGGGCGCTCTCGCAGGACGCG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGGCCCCGCGGGTGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGGTGTTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 55082-54688 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCXB010000052.1 Streptomyces sp. SF28 NODE_52, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 55081 28 100.0 33 ............................ CGCGGCAACCGCCCGGATCACCGGATGGCCGGA 55020 28 100.0 33 ............................ CGACGAGAAGGCGGTGACCGCGGTCGCGTTCTG 54959 28 100.0 33 ............................ CCAGTCGGGCGCGTCCCGGAGGAATGCACCGGC 54898 28 100.0 33 ............................ CAACCCTCACGAAAGGGGCAATTGAATATGGAC 54837 28 100.0 33 ............................ CGCCGCGCGTGCCGTTGGGCATTGGAGGCGAAC 54776 28 96.4 33 ..........C................. GAACGGGGTGTGCACTCGCCAGCCCCAACCAGG 54715 28 96.4 0 ..........C................. | ========== ====== ====== ====== ============================ ================================= ================== 7 28 99.0 33 CCGCTCCCCGTGCCTGCGGGGATGAGCC # Left flank : GGGGATGAGCCCAGCAGGTCGGGATCCTGCTGGTGGATCCAGT # Right flank : CATCCGGCCGACCAGGGTTTTCGATCGGGTCGCCCGCTCCCCACGCGGCATGTACGGCCTGCCGCCCGACCCGCGTGTCCTGGTCCAGGACTACGTCGAGGGCACCGAGTACAGCGTCGAATCGATCACGCAGCACGGGACGACCACGCATCTGTGCACCACCCGGAAGACCGTCACCCCGGGCGCCCACCGGGTCGAAGTCGGTCACAGCCTGCCCGCAGCCCTGCCCCCGGGCACCGAGCGGGCCGTGCACCATGAGGTGGAGCGGGCGATCGCCGCGGTGGGCATCCGCAACGGCGCCTCGCACACCGAGGTCATCGTCGGCGGAGACGGGCGGTGCGCGGTCATCGAGATTGGTGCCCGCCTCGGTGCCGGACACATCGGCGTCCTCCTGCGGCACGCGCTGGGAATCGACCCGTGGACGGCCCTCCTGGACACCGCCCTCGGCCGCCCCGCGCACCTCACCCCGGCCCGCTACGCGTACGCGAGCGTACGGTTCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCTCCCCGTGCCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2967-2573 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCXB010000064.1 Streptomyces sp. SF28 NODE_64, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2966 29 93.1 31 ..........................T.C CGCCCGTCCAATCACCTCCCCCACCGACTAC 2906 29 93.1 32 ..........................T.C CCCTGCGGGTTGCCCCCGCCGAGGTGGGGGCG 2845 29 96.6 33 ............................A CCGAGATTGCGGCAGCACTCGCCTGGGTTGCCA 2783 29 100.0 32 ............................. CCGCGCGGCAGCGCGCGGAAAGCGCGCGGCAG 2722 29 93.1 32 ..............C.............C GCCTGGCCCATCCGCCAGACGATGCGGCAGGC 2661 29 100.0 31 ............................. GGCAGGACTGCGCGGAGAAGGTGGACAACCG 2601 29 72.4 0 ............AAA......CC.AC..C | ========== ====== ====== ====== ============================= ================================= ================== 7 29 92.6 32 GTCGGCCCCGCGGGTGCGGGGGTGGTCCG # Left flank : CTGCACACCGGCGGCATCGCCGTCCTGGTGCTGGTGGTCGTCGGCGGACTGCTCTACAGCGCGGGCGGCGTGATCTACGGCATCAAGCGCCCCAACCCCTCACCCCGGTGGTTCGGCTTCCACGAGGTCTTCCACTCCCTCACCCTCGCAGCCTTCGTGGTGCATTACGTCGGCATCTCCTTGGTCGCCTATTCGCACGCCTGATGCGGATGCCGCGGCGCAGCACGCGTACCGGCGTGGCCCGCGGGCGGGCACGTGGCGCGAAGACGTACGCGCCCGGGCTCCGCGAGGCGAGGTGCCCCGGGCCCTTCGCGGCCTGGACGCGTTCGCTCGGGGGGGCCCGCAGCCGCAGGGATTCCGTTCGCCCGTGGATACGGGACGGGCTGCGTTTCGTAGATCCCGCAGACGCGGGAATGATCCCTACCTCAACGCTCCAGAAGAGCTCGGCGCAACTAAAGGAAACCGGGGCAAGACGCGGATAAACTTGCAGGTCAAGAACC # Right flank : AGCCGGCAACCATGCCGAGACCGATGCACCGAACTCGCCCCCTCCCCCGAGGGCAAGCGGCCCGGCGGCACCCTTTCCCGTCGTGCCACATCCGTGGCCTCCGGCGCTCTCGATGGCCGACAATGGTGTCCATGGTCTCTGCACGTACCTCCGCCGCAACACCGGCTGGAACACCGGCAATCGGGCTGCGTGAACGGAAGAAGATCCAGACCCGGCAGGCGATCCGGCGGGCCGCCTACCGACTCTTCGACGAGCAGGGCTACGACGCCACGCCCGTCGACCAGATCGCCGACGCCGCCGAGGTCTCGCCCAGCACTGTCTTCCGCTACTTCCCCACCAAGGAAGACATCGTGCTCAGGGACGCCTACGACTCCGTGCTGGAGGCCGCGATCCGGGGCCGCCCGGCCGGCGAACCGGTGGCCGAAACCCTGCGGCAGGCGGCCGTCACGGCGCTGCGCGCCCTGGTCGCCGGGGACCACGGCGAGCTGGTCCAGCGCGCG # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGGGTGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCGTGCGGGGTTGGTCCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.10,-12.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 7912-7029 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCXB010000064.1 Streptomyces sp. SF28 NODE_64, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7911 29 96.6 32 ............................G ACCGCGGCTGACGGCCGTCGTGCTCAGCTCAT 7850 29 96.6 32 ............................A CCAGGGAGGCCAGGACGCTGGGGTGCAGGCCC 7789 29 100.0 32 ............................. GCTGGATCCACCACCTCGATCGCAGGCCCTAC 7728 29 100.0 32 ............................. TGCGACTGCTCCACCACCTGCTGTTGGTTGAA 7667 29 100.0 32 ............................. TGGTCTCCAGTTTGACTCAGCGTTTCAGCGAG 7606 29 96.6 32 ............................T GGCAGCCGGAAACCCGGACGATGGGGCCGAAG 7545 29 96.6 32 ............................T CCAGGTGTCGACCAGCTGGAAAGGCGCTTCGA 7484 29 96.6 32 ............................G CCCACCCTGATCTCGCCCCCGGCGACCACGAA 7423 29 96.6 32 ............................G ACGGACGCCCCGCACCTCTTCAGCCGGTCGAG 7362 29 100.0 32 ............................. AAAATGGATTGTTGACATGCTGGGTGGGGAGT 7301 29 100.0 32 ............................. CCAGATTCTTCGACAGAAGGCCGTTGACGATC 7240 29 96.6 32 ............................G ACGCCGGGCACGGACTTGGCCATCAGCTCGGC 7179 29 96.6 32 ............................T TCGGCTACGTCGCCGTCAACCCCCACCACGCC 7118 29 100.0 32 ............................. GCCCCATTCCTCAGCGAGCACGCGATCCGTCG 7057 29 89.7 0 .............T..........G...G | ========== ====== ====== ====== ============================= ================================ ================== 15 29 97.5 32 GTGGGCCCCGCGGGTGCGGGGGTGTTCCC # Left flank : AACCCGGAGGTCGCGCAGACGCATCACCCGCTCGGAGAGGGGGTGTTCCTGGCACGGCAACGACACGGCCACCCCGGATACGCCCCGACCGTCCCGGCCGTCCCCGACCATCCCGGCTGCTTCGTCTCCTGTCGGCGCATGGTCCAGCACGATGGCCTTGCCTTCACGGAGTGTCCCGCCCCGCTGTAGACCAAACCACCGGCGACGAGGGGCCGTTCGGCATACCCCTGTCTGCTCTGCTTCCAACGACGGGCCGACTACCGGGCCCAAGTCGCCACCCTGGAAGCCGGAAGCCACGACCCGGTACCGTCGGCGCACCTGTTGAGAGTGCTGGAGGACATCAGTGCCGCTGTGTCCTCAGCCTGCGGGGCACGTGACATCGCCGACGCGACGCGACGAAGTGCAACCGCCGAGAACGGAGCCCATCCCATCGAGGAGGAGCCACTGTGCAACTAAAGAAAACCGGTGCAGAGCACGAGTAGAGTCGCTGGTCAAGAAGG # Right flank : AGCGCGGAAGTGCCGGTCGAGCAGGAGTCACGAATACCAGGCGCGCGCACTCAAGAAGAAGCGGACTCCCGTCACCCCATAAACGCAGCACCTCGCCGCATCACGGCGCGGCGATCAGCGCGTACGTCACCCCGACCGGACGCCCGTCCCCGACCTGGCCGGAACGGTCCGGGGGACGGCCTCCCGCGCCCGACGTATTGGTGCCCGCTCCAACCGCCTGGCCCAGGTCGCTCCCGGCAGGGCAGGCCGACCGGCCGTCGGGGCGGCATCTCTCCCGGCCTTCTCGGTCTTCTCGGCCTTCTCGGCGGCTACGGACAGTGCCGGTCCGCCGCGAATTCCTGGACCTGCGCCACTTCCCTCCACACTCGGCACAACTTTAGACTTTGTCTAATGTAAGATGGTCTCCTAGACGTTTTCAGGAGGCCATCCCATGTACGAACCGATCCGCACCAAGTCGGTCCACACCATGGCCGCGGCCCCGGAGATCCCGCATCGCTCCC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGGCCCCGCGGGTGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGGTGTTCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 20102-18985 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCXB010000064.1 Streptomyces sp. SF28 NODE_64, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 20101 28 100.0 33 ............................ CCCGCGGAGCTTGCGGAAACCCTCCTCCGCGAC 20040 28 100.0 33 ............................ CTCCTACGACGGACGCACACACGGACCCGCACT 19979 28 100.0 33 ............................ TGGAGTCGGCGGCCTGCCGGCACGCGTCCGTCA 19918 28 100.0 33 ............................ CGCCCGCCGCGCTCGGGTTCGCGGTGGGGTGGA 19857 28 100.0 33 ............................ GACAGCCCCGGCTGCCCTGGTGGGTTGCCGGGG 19796 28 100.0 24 ............................ TCCAACTGTCCGCTGCGCGATCCT Deletion [19745] 19744 28 100.0 33 ............................ CCGTCGAATCCAGCAGTGGCCCCTGCTCAAGGC 19683 28 100.0 33 ............................ CGACCCGGGCACCAAGATGATGGTGAGCGTCCT 19622 28 100.0 33 ............................ TTCCGCGGATCCGGAGATGTTGCCGATACTGTT 19561 28 100.0 33 ............................ CGGGCCACACAGGGCCGTCTAGGCGGGGGCGTG 19500 28 100.0 33 ............................ GCCGCGCCCGTTCCGCGCCTACCGGATGAAGCC 19439 28 100.0 33 ............................ TGGGGGACATGGAGGCTGTGCAGGAGACCCTGC 19378 28 100.0 33 ............................ GCGGTTGTCGGGGCGTTTTCGTTTCTGACGTTA 19317 28 100.0 33 ............................ GTGGGAGGACACCGCGCGTCAGCAGCTGATGCT 19255 28 96.4 32 ...........................G GGCGTCGGGCGCCGGATCGGCCGGCACGAGAG 19194 28 89.3 32 .........A.A.A.............. GCCATGGTCATCTTCGCCCGTGGCTGGGCAGG 19133 28 85.7 32 T.G............T...........T ACGCCGGATGAGCAGCACACGCGGACCCCAAC 19073 27 82.1 33 .....G.T.....-.......A..G... GACCGCCAGGGTCACGAGCACGAGGATGCCGAC 19013 28 78.6 0 ...........AA.C..A....GC.... | G [18987] ========== ====== ====== ====== ============================ ================================= ================== 19 28 96.4 32 GTCGGCCCCGCGGGTGCGGGGGTGTTCC # Left flank : TCTACGCCTTCCCGCGCCTCGACCCCAAGGTCTACAAGATCAAGGACGACCGCGAAATGGTCCTCGACCTCCTCCGCGCCGAAAAAATCATGATCGTCCACGGCACCGGCTTCAACTGGCCCGACCCGGACCACTTCCGCCTGGTCACCCTCCCCAACAAGGACGACCTGACGGACGCGGTGACACGGATCGGGTCGTTCCTGGACGGGTACGGGCAGTTCTGAGGCGGGAGGACAGGGCAGGGCGTTCGGATCATGGCCATGCGAGCGCCGGCCACTGCGGGGGCGAGCTGCAATGCCATCACCTTCCCGTGCGGGTGAGCGGCCAAGCGACGCATCCGGCCCGTACACGTACAGACTTCCGACACCGCGGGGCGGCCGTCCGATCTCGCTCTCCGTAGGCTCCGTGGATACGGACCGCAACGCCGTGAGCGGAGGGAGACTGAGCTGCAACCGAATGAAAACGAGGTAGGGGGCAGACAGATCCCCAGGTCAGGAAGT # Right flank : CCAAGGCGAGTCCGCTGCCGACGCGGATCTCGGACCACAGCCCGAAATCGGCCGAATGCCCGGCGCAGACCAGAGGGTTGCAAGGACCCGGCCAATGGCACAAGGGCGGCGCAAGGCCCGCCGGTCGAGGTGGAGGCTGCCCCTGTAGGCCCAGCCATGGCGAACCGAGCCGGTCCACGGCAGTCAGGTGCGGAGCAGCTGTCACCGAGACGCACGACTGCCGGTCCACTCCCTACGCGCAGCGGATCCCGTAGCCGAATGCGGTGAACACGGTTGCACAGGACGGGACTTCAGCGCTCAGCGGCCATCCGTCACCGGCGGTACGTCTGCTTTCCGGCGGGGGCGGGTTCCGATCATCGGGCGACCGCGGAGCCTGTGCCGCACGGCACATCACGCACGGATCACCAGGCCCACCCCCACGGCCCTCACCGCCTCTCCCGAGCCGAAAGAATCACCCCTCGAAGTCGACCGGCCGCCAACGCTCGCGCCCCGCCGTGCGG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGGGTGCGGGGGTGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //