Array 1 298633-300797 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACSKG010000004.1 Raoultella terrigena isolate 18115_WYM25_G5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 298633 29 100.0 32 ............................. CCATTGATAGAATATATCGAGAAATACTACGG 298694 29 100.0 32 ............................. GCGCGATTGCTTCGGTTAAGGACAGTAACCTG 298755 29 100.0 32 ............................. CTATTTACCTGAGTAGTAATAATTGCTGTCAA 298816 29 100.0 32 ............................. CCCGCGTTATGGTTTTAGTGATCGCTTCGGAT 298877 29 100.0 32 ............................. ACAATTGGTCTTCACAAAACTGCTGCTGGTGT 298938 29 100.0 32 ............................. CATCAGCAATCTGGTCTGCCGCGATGACGGCA 298999 29 100.0 32 ............................. CATCCAGCTGTCGTCCTCCCAGACCTGCTGCA 299060 29 100.0 32 ............................. TGCCTGCCCTTCATGGTGTGAATGCTGTCGAT 299121 29 100.0 32 ............................. TACGAACGTGCCGCCGAATTCGACGGCTGTCT 299182 29 100.0 32 ............................. CGATGCCGTCCGGCAGAGTGTAGGTCGCAGGT 299243 29 100.0 32 ............................. CCAGGTATTCTTCTCGGGTTTGTGATTGAGCA 299304 29 100.0 32 ............................. CCTGTGAACTATAAACGGACTGGCCACGCTAT 299365 29 100.0 32 ............................. CGCCGGAACCGCTGACTCAGTGCAACGGGTAA 299426 29 100.0 32 ............................. GCGTCTGGTCCCCGATTGTTGAGGGTCGGATT 299487 29 100.0 32 ............................. GCGCTATTGATCGGTAGTAGATCCTGATGTCG 299548 29 100.0 32 ............................. GAAAACCATAATGAATAACAGCCTGATCGCCA 299609 29 100.0 32 ............................. CAGTACGAAAAGGCTAGAACTGATGCGCAGTG 299670 29 100.0 32 ............................. AATTTTGAGACGATAGCATTTTGACGCTTGGC 299731 29 100.0 32 ............................. CGGCCAACGTGGTCGAAGTTACCCGCAAGATT 299792 29 100.0 32 ............................. TAGTCCTGTGGCGTGCCTTTGCCCGCCGAGGT 299853 29 100.0 32 ............................. TAAAAACTCTAATTTCTCAGTCTGGTGGTGAT 299914 29 100.0 32 ............................. CACATGCTGTACGCCGGCATACCGCTGAAAGT 299975 29 100.0 32 ............................. TTTTCTCTTTTCGGCCGTAAAAATGAAGTGAA 300036 29 100.0 32 ............................. GGATACGTGTTCCTCTTTTTATGGAGAATGCG 300097 29 100.0 32 ............................. CCACTAACGGGTTAACGCTGCGGCTGGATTCA 300158 29 100.0 32 ............................. TGCTCCCGGTTTTACCTGACAGCTGGAAAATG 300219 29 100.0 32 ............................. AGTGCCGCACCGTCAACGAGTGGGATAGCCAG 300280 29 100.0 32 ............................. CCCGGTTAATGACATACGACGCAATAATCGTG 300341 29 96.6 32 .............T............... CATTTTGCAGTCCGGGGAACTCTTCGATGTTA 300402 29 96.6 32 ........T.................... AGATGGAAGAAGTGGGGCCAAAGGTGCCGCTC 300463 29 100.0 32 ............................. CGTCCATAGGTCAGGGAGGTGTGCAGGTAGCG 300524 29 96.6 32 ...........A................. GTCGATCCAGTCGCTCGCGTCAGCGCTGCCAG 300585 29 100.0 32 ............................. GGGGTAATGTGTCTTCAGCATGAATATGGAGA 300646 29 100.0 32 ............................. CATCCAGTGCGATCTGCTCTTTTGCATGCTGG 300707 29 100.0 32 ............................. GTAAATCTGGTATTCACTGTCGTTATCACCAC 300768 29 100.0 0 ............................. | G [300785] ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGTTGGCAGCAGGTGAAATACTCCCACCGCAACCAACCCCCGATATGCTGCCTCCGGCAATTCCTGAACCGAAACCTATTGGTGATTGCGGTCATAGAGGGGGTAGTGGATGAGTATGGTTGTCGTTGTGACGGAAAATGTCCCACCGCGATTACGAGGTCGACTTGCGATCTGGCTTCTGGAAATACGGGCTGGTGTTTACGTTGGTGATACTTCAAAACGTATCCGTGAAATGATCTGGCAACAAGTTACTCAACTTGGAGGCAGTGGGAATGTTGTAATGGCCTGGGCAACGAATACCGAATCTGGTTTTGAGTTTCAAACATGGGGAGAAAACCGCCGTATGCCGGTAGATCTAGACGGGCTTCGGTTGGTTTCATTTTTTCCTTTTGAAAATCAATAGAATAACGGTTCTTTAATAATGCGAAATTGTTACAATCAAGTTGGTAGAGTGTTGGTTAATGGAAAGGTTATTGAAAAATAACAATATATTTTTAGT # Right flank : GGCTGATATCACCGAACTGGCGCAGAGCCTGAATCGTTCCCCGCAGCAGCAAAGCGCCAGCTAGCCGCGCTTATCGGCCTTCGCCAGCTCTTTCACCAGCGGCAGCATCACCTTGACGACGTCGCGGCTGCGCCGCTCGATGCGGCCGGGGAGCGCTTTGTCGATATGCTGCTGATTATCCAGCTGCACGCTGTGCCAGCTGGAGCCGTCAGGGAAGGCGGGGGATTTTGCCCGCTGCTGGAAACCATCTTTCTTACCGAGCGACCAGTTGGTGGCCTCCACCGACAGCACCGGGATCCCGGCGCTATCAAAAACGCTGGCGTCGTTACAGCAGCCGGTGCCCTGCGGATAGTCGCGGTTCAGCCCCGGGTTGCTGAAGGCGGCAACGCCTTTGCTACGCGCGATGGCCAGCGCCCGGTCGCGGGTCAGCTTGCGAATCGCCGCCGGCGTGCTGCGGCCGCTATTAAAATAGAGCTTGTCGCCGACCACCAGATTATCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 21-384 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACSKG010000078.1 Raoultella terrigena isolate 18115_WYM25_G5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 21 32 100.0 35 ................................ CCTGCACTGTGGTTGGGCGGTAGGGCTTGGCACAG 88 32 100.0 35 ................................ TTGACAAACGTGCCGATCCCATTGGCGACCGCCTG 155 32 100.0 36 ................................ CGCCATCTCGTCCACGTAGGCCAGCACCGGAAGCAC 223 32 100.0 34 ................................ ATCAACCGATTCTCGAAGGATTGACCCATGGCCG 289 32 100.0 32 ................................ ATGCCGCCGGAGCGGTATTCCTCCAGCTTGCG 353 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 100.0 35 GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC # Left flank : TTGCCGTGAACCGCTACCAAG # Right flank : CTATGTCTGCCGCTGCTGTCGTTGTTTGGTTGTTGTCGCGCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.30,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //