Array 1 3485560-3483902 **** Predicted by CRISPRDetect 2.4 *** >NC_021812.2 Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002069, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3485559 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 3485498 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 3485437 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 3485376 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 3485315 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 3485254 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 3485193 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 3485132 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 3485071 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 3485010 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3484949 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3484888 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3484827 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3484766 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3484705 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 3484644 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3484583 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3484522 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3484461 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3484358 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3484297 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3484236 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3484175 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3484114 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3484053 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3483992 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3483931 29 96.6 0 A............................ | A [3483904] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3502944-3501818 **** Predicted by CRISPRDetect 2.4 *** >NC_021812.2 Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002069, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3502943 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 3502882 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 3502821 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 3502760 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3502699 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3502638 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3502577 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 3502516 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 3502455 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3502394 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3502333 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3502272 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3502211 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3502150 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3502089 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3502028 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3501967 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3501906 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3501845 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //