Array 1 945000-949117 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBLB01000001.1 Spirosoma sordidisoli strain TY50 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 945000 30 100.0 36 .............................. GCGAACTACCGGGGTGACAATGGATTCGAAGAAGCG 945066 30 100.0 38 .............................. TAGATGGTCAGTTTAACCGGGCTGGGAAAGTCCTGCGC 945134 30 100.0 37 .............................. GTCGAGATAGATCAGCCGGTCGAGCGCATTGGTCAGC 945201 30 100.0 35 .............................. CGAAGTAGCCGCCCTCGAAGCGGCCAAACAGCGCG 945266 30 100.0 36 .............................. AGTAGTCTACGCTGCTCCAGCCGGTCGAGTAGCGTC 945332 30 100.0 35 .............................. GGAGAAAAACGACAACAGCCCCAGCCTGACCGCTC 945397 30 100.0 36 .............................. TCTTCGAGACTATAGGCAGGCATGGCCCGGTGAAAG 945463 30 100.0 36 .............................. AAATTCGGGATTACCTGCCCGTCGCCCCCGATTTTG 945529 30 100.0 36 .............................. AAATCGTATGAAATACCGGCTCTACCACGTCGTAGC 945595 30 100.0 35 .............................. GCGGGCAACACGGGCACCATTACGGTGGTACTGGC 945660 30 100.0 35 .............................. GGGCTTATCCGCACCGTAGCCGTTGGTGAACTCGA 945725 30 100.0 37 .............................. AAGGCTGCAAGGATGCTAACGAAGTACAGCAAAAGCA 945792 30 100.0 36 .............................. CCTGTCCTGGGCAACGGATACGGTAGAGCGAATAAT 945858 30 100.0 34 .............................. GGCGCACAGCCTGGCCGACTCGCTAACCCGTAGA 945922 30 100.0 36 .............................. AGAGTACCCCGTAACACCCCCACTCAACCTAAGAGA 945988 30 100.0 36 .............................. CTCGAAACGCGCATTGGCGGTTACGTACTGCACATC 946054 30 100.0 36 .............................. TTGCCGGTAGACGCGTCAACCATACGCGCCATGTGG 946120 30 100.0 35 .............................. TTTGAAGAATACATTACGGCGCGGGTCCTGGCTAA 946185 30 100.0 35 .............................. TAGGGCAGAATAACTTTTTGATTCGCAAATTCTAC 946250 30 100.0 37 .............................. GGGGCCAGTACGTGCCAGGCTAACAGCATCCGGCCGG 946317 30 100.0 37 .............................. ACTATGTACTACACATGCCAGATGGTAGCCAGCAGGT 946384 30 100.0 36 .............................. ACCCCTGACCGCGCAGCACGTCGCGGATACGTTTTC 946450 30 100.0 36 .............................. ACCTGGAAAAACGCGCCCGGATGAGCGCCGACGAAA 946516 30 100.0 36 .............................. TGTTTGAAACGCGAAAAAGGGTAGCGTTTCAAACGC 946582 30 100.0 35 .............................. GCTCATCGACAAGTTTAGTAACGGCATTACCTCGC 946647 30 100.0 37 .............................. AGGCAATGCCCCGGCCTTATCGAAACTCCTCTCAGGT 946714 30 100.0 35 .............................. AACCACGACAGCCGGAACCGCGCAGGACACAGACG 946779 30 100.0 36 .............................. GGCTGAACTGCCGGGCGGCTGGGATAAATGGTCTAC 946845 30 100.0 36 .............................. TTCGGCGGTATCCGCCAGGTGCCAGGCGGCTTCGGC 946911 30 100.0 36 .............................. GGCGAAACCGACGACGACACCGGCCACACCAAATCG 946977 30 100.0 37 .............................. TCGATCAGGAGCCACCGCCTGGATACCAGCGCAATCA 947044 30 100.0 37 .............................. CTCGTTCAACTCGAACGCCCGCGTGATCGTCTCCAAC 947111 30 100.0 36 .............................. ATGCCGATAAAGACCAGCGCGATATACACCGCCCGG 947177 30 100.0 37 .............................. TTTTCGCTGGCGTACTTTTCGGCAATACCCCGCTCGG 947244 30 100.0 36 .............................. GCGTTTTTTCTTGCTGAGTCCGAGCGCGGGCGCGAT 947310 30 100.0 37 .............................. TGATGATTCTAACCCGGCCGGTATTGAAGCAATCGCA 947377 30 100.0 35 .............................. GCCCTTTAACACGTAAAACAAACTGCCCGTTAAAG 947442 30 100.0 36 .............................. CGAATACAAGAACGCGTTCTTCACCGAAGCCGCCTG 947508 30 100.0 35 .............................. GCGTATGACGACAAGCGCGACACCGTACGCATTAA 947573 30 100.0 36 .............................. AAATCAAACTGCTACCCACCCCTGAACAGGCACAAG 947639 30 100.0 36 .............................. CGAATACAAGAACGCGTTCTTCACCGAAGCCGCCTG 947705 30 100.0 30 .............................. AACGAAAACCAAAACCAAAACCCGCCCCCA 947765 30 100.0 37 .............................. TTACGCAGCACGGTACTGGGAATGACAACCGGATAAC 947832 30 100.0 35 .............................. GCCAAACTGGCGCTGGTGGCCAAGCTGCTCAACTA 947897 30 100.0 36 .............................. GAAAGGACTGAGCAAAACAAGTCAGGACGGACTGGC 947963 30 100.0 37 .............................. GGTAACGTGTTTACGCTGGGCAGTCAGACCTACACCG 948030 30 100.0 35 .............................. ACAACGTGTCCACCTGCGGATCGTAGTAGAACTCA 948095 30 100.0 36 .............................. CGGCTTCGGCATTGCCAGACGCGTGGCTGACCTGCT 948161 30 100.0 36 .............................. GCGCGACCGCAACCCTTACACTCCTGCAAAGATGAA 948227 30 100.0 38 .............................. ACTACAAGCTTGACACCAAGCTGCCCGCCGATGCCGAA 948295 30 100.0 36 .............................. TGGGTAAAGAGAAGCTGCCCCAATTGACCCTCGCGT 948361 30 100.0 38 .............................. CGATCAACCCGCCGTTCTCGATCAGCTCGTGCTCCATG 948429 30 100.0 36 .............................. GGGTATCGCATCGGCCGCTTCGCTGGGCTACGATTA 948495 30 100.0 36 .............................. GTGGTTTCGTCGCTGATGGTATGAAATACCGGTTCG 948561 30 100.0 36 .............................. TTACCCTGAACCGGCCCGGTGGCGGCACCAGCACCT 948627 30 100.0 37 .............................. TTGGATGACCGCCAGTTTTTAAAGCTGTTGAGGATAC 948694 30 100.0 35 .............................. ACGGTACGCGGTTGTTTGCGGGTAAGTCGGTCTAC 948759 30 100.0 36 .............................. GCCAGATCGGATTCGAAGTACTTCGCCCCTTCGTAG 948825 30 100.0 35 .............................. AAAAAGAAGGAGCCACGCTGGTGATTGCCAAACTA 948890 30 100.0 36 .............................. AGAAGATACCAGGCTGGGGTTTCTGGACGAAGCTCA 948956 30 100.0 36 .............................. TGTTTTACGCCCTTGGGTCGTAATTTGTCGGAAATA 949022 30 100.0 35 .............................. TCCGGCCGCAGTGAAGACCCTGCATGAACTGTACA 949087 30 93.3 0 ....C.......................G. | C [949090] ========== ====== ====== ====== ============================== ====================================== ================== 63 30 99.9 36 CTTCTAATCGTACCTGAGTGGAATTGAAAT # Left flank : CACTCAATCACTCAATAAAAACATGTACGTAATCCTGGTGTATGACATGGGGCAGAAGCGGGTCGGCAAAATGCTGAAGCTCTGTCGGCGGTACCTGAACTGGATACAGAATTCTGTTTTCGAGGGTGAGATGACGGAGGTACAGCTAAAGGAACTTCTTTACGAAGCCCGGCGAATTATGCGTGAGGACGAGGACAGCCTGATTCTGTTCAAGAACCGCGACCAGAAGTGGCTCGATAAGGAGATTGTGGGTGTAGAACGGCAGTCGACGGATAATTTTTTGTAGGGGGAAATGTCGTCGGTCTGGCCGAACCTGTTCATTGACATGTTGTAGAATCAGGAAGAAAAGCCTTGTTTGCAGGTAAGCGACTGACAATGAGCCGTCGTCGATCGCCGGGCCTTTTCGTAGTATTGGCGATCGACGATTTTTCATTCCAGAATAAGAGTATCAAAGTGTCTTGGGACAATCTCAAGGCACTTTTTTAGTACTAATTTCACGC # Right flank : TGAGCGGGGAGTTGGTTGAGTTATTCGGTTGGTCCGTTAGGATTTGGGGGGTTGGTTCTTTGGTTGATGAAGGTACTCCATAATGCCTGATGCTAACTATGAAATCATACCTCATTGCGCTGGCTACAGCGGTCGTGCTGGCGGGCTGCGCCGGCGCTAAAACCACCCAACAGGCCAATGGCTGGACCAGCCTCTTCGATGGAAAAACCCTCACCGGCTGGCGGGCCGCCGAAAACCCGGCCACCTTCAGCGTACAGGATGGGGCCATTGTGGTCTTCGGCCCACGAGCCCACCTGTTCTACGACGGACCCGTCAACAACCATTCGTTCAAGAACTTCGAGTGGAAAGCGCAGGTGAAAACAATGCCCGGCGCCAACTCCGGCATGTTCATCCATACCACCTACCAGGATACTGGCTGGCCCGTCAACGGCTACGAAATTCAGGTGAACCAGACCCATACCGACTGGCGAAAGACCGGCAGCGTGTACTCGTTTCAGGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTAATCGTACCTGAGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 1 173303-174512 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBLB01000002.1 Spirosoma sordidisoli strain TY50 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================== ================== 173303 36 100.0 34 .................................... TTTATCCTGGGAGATTTTGCCCAATGCACGAGTG 173373 36 100.0 33 .................................... AGGTTTGTTACAACCTTTAATTCTACACTGTGA 173442 36 100.0 37 .................................... CCACCGACACGGCCCGTAGCCGCATCTGCCCATTCCT 173515 36 88.9 38 .......C.TA..G...................... ACTACCACCTTCAAATTGACAGTTGTTTATGCCGATGA 173589 36 91.7 36 .........TA....................A.... TTAATTTTAACAACATTGTTAGATTGTGCAAAAAGT 173661 36 91.7 36 .......C.TA......................... AACAGCATCTGGGATGCTAGATCGCCTGAGAGAAAA 173733 36 100.0 40 .................................... ATAAAACTCTCATAGCTTACTGTATCTGCTAATTGCATTT 173809 36 97.2 37 ..G................................. ATCAGTCCTATAAACGTCAGCTGGAATATCCAGTTGC 173882 36 100.0 36 .................................... TCTGACGCATTTCTGCATCATTACCGCCTAAGAAAA 173954 36 100.0 35 .................................... ATCAGGCAATTAACCTTGCAAATGGGGCGTAAGCT 174025 36 100.0 37 .................................... TTAATCCACTCCACGTCCTCTTTTTTTAGCTCCGAAA 174098 36 100.0 38 .................................... ACTACCACGGTACCCAGATTGCTTCTTAACCCAGGAGT 174172 36 100.0 36 .................................... TTGCCATTGGCGCTTTTTAGTGCTATGGAATCGGCC 174244 36 91.7 52 .......C.CA......................... ATGGCGACATCCTCGCTACTTGGGAAACAGCCGTTTTTCCGGGGAAAAATCG 174332 36 91.7 40 .......C.CA......................... ATTGTTGTTTGCTGCGGTTACAGCGACTTTGATCGTCGTT 174408 36 91.7 32 .........TA...............G......... TCCGTGCTGCTTTACGATATGATACCGATCGC 174476 36 77.8 0 ....A.A.AG....................C.TT.A | A [174507] ========== ====== ====== ====== ==================================== ==================================================== ================== 17 36 95.4 37 GTAGGAGTGAGAGTCTGACGGAGAAGAGATTGCGAC # Left flank : ACCACCCGGTCATTTACGGAGCAGGATGAATTGATGCTGGACGACTACACCGCCCGGACCGGTGCCCCCATTCCTGCCCTGAACACGCTGCTGGGCTTTACGTCGGGCGACATAGCCCTGTTTCACGATACTGACCTGAAAGAACTGGCTGGTCGGCTACCGGTAATTGCCCGTAACAACCTGGAAAACGGGCGGAGTGTGAACCTGTGGTATGAAGAAATTGTGCCCCGCCAAACGCGCTTTACCTTCTTAGTGCGCCACCCCCATAACCAAAATACGTTCTACGATACACTGCATACAGCAGGAAGACCCGTGCAAATTGGGGCTAACGCTACCATTGGATACGGACAATGCACGATGACAAGACTACCGACTAATACACTTGTATCGTGAGCCTGTCTTTATAAGCCAATTTAACTCAAATGCATAAAAACGGCTTTCAGAACCAGCAAAAAAAGAGGATAATAACCCTGAATATCAGATAATTAAAGAAAAATGCG # Right flank : AATTGACCACGTATGAACCCAATTGAAAAACACTTAGCCGAAGCAAGGAGGCTCATTCAGGAAAGAACGGGACTGCTGACGCAGACCGGTAAAATTCCGGCCGTGTATCGGGGGTATGTATCCTCGTTCGGGGTCGATGTGCGGCAGTCGGGCGTGTTGCCGACGCTGTTGCTTTATAAAGCCACCGATGCCAATACCCATGAGAAAGAGGCACGGCCGCTGGTGGTTGAATTAATAGGTAAGCTGCTGGATCAGCCCAGTCCGCAGGCGTTCGTGAACCACGCCTTTGCCTGCAACGATACCCCCGCCCGCCGAAATAAACTTCGGCGCGAAGTCATGAACGCGGCCGTTGCGCTTAAACTGGCTATGCGCACCTTTCCGTTTGATGACGGCAGAATAGATGCCGCCCCAACCAATGCCGAACTCACCTCTCCAGCCTGACCACTCCCGCCATGCCTATTTATCCAAATCTGCACTGGAAATACTACGTCGATTATTTC # Questionable array : NO Score: 2.89 # Score Detail : 1:0, 2:0, 3:0, 4:0.77, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGAGTGAGAGTCTGACGGAGAAGAGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [10-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 2 177228-178598 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBLB01000002.1 Spirosoma sordidisoli strain TY50 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================ ================== 177228 36 97.2 39 .......C............................ CAGACAATCCATACGTAAGCAAAGACAGTCTTTTCCCAC 177303 36 97.2 34 .......C............................ TTGAGAATAAAGCCTTCTGGCGCGAAGAAGTCAT 177373 36 97.2 35 .......C............................ CTGTCCGTCAAAAGCCGCCAACAGTGCCTTTGCAA 177444 36 97.2 37 .......C............................ ATTTTGAAGGAAAGCTTTTCTAAGGTTAGCTCCACCT 177517 36 100.0 39 .................................... AAAAGGTAATGCCCTTTCCACGGAATCTTGTTATACCAA 177592 36 100.0 38 .................................... TATACCAACTTTTTAGGTTTGGTGATGAAGTTGGTACG 177666 36 100.0 48 .................................... ATTTTTTGATGCCACAGCTCCATGATGTACCGGTGTACATTCAGCAGA 177750 36 100.0 34 .................................... ATTTCAGCAAATTCTTTTTCAGCTGTTGTTGCTT 177820 36 100.0 38 .................................... ACTGTCTGTTTTGCTTCTTCTAATAAATCTTCGGATTT 177894 36 100.0 33 .................................... ATAAGAGAATGTGGCCATGACATTCATTGAACT 177963 36 97.2 35 .......C............................ TCATTGCCGTTCTTTGTAGCGAGTAACCCCGTGAG 178034 36 97.2 44 .............G...................... ATGGCCTACCAGCTTCTTATTTCGTCAAGGATCTCGTCGGGGAT 178114 36 97.2 39 .............G...................... AGATTGCATTGGTGAAATCGATTTCCTTTTCCATGATAA 178189 36 100.0 33 .................................... ATAAGAGAATGTGGCCATGACATTCATTGAACT 178258 36 97.2 35 .......C............................ TCATTGCCGTTCTTTGTAGCGAGTAACCCCGTGAG 178329 36 97.2 44 .............G...................... ATGGCCTACCAGCTTCTTATTTCGTCAAGGATCTCGTCGGGGAT 178409 36 97.2 39 .............G...................... AGATTGCATTGGTGAAATCGATTTCCTTTTCCATGATAA 178484 36 97.2 43 .............G...................... AACTGATCGAAATGCGTGCTTTCCAGCTTGATGACAACATAGT 178563 36 94.4 0 .......C..........................G. | ========== ====== ====== ====== ==================================== ================================================ ================== 19 36 98.1 38 GTAGGAGAGTAAGTCTGACGGAGAAGAGATTGCGAC # Left flank : GCGAACCATTTCATACTTACCAGGTGTCCCGCACGGGCAGTATTTACCGCTATGCCAGTGCATTACGCCAGAAAATAGACCTATTTCCTTTACCTGCCTGACCATGTTATATTTAGCCAGTTATGACATTGAAAACGATAAGCTGCGGCTGAAAGTAGCCAACAGCCTGTTAGCCGCCGGTCTGGAAAGGCTTCAACGGTCAGTATTTGTGGGCACCCTCGACGACGGCGGTCAACAGCGGCTGTTGACCGAGATAAACCGATACCTGCTCGATGCCGATCCGGCCGGTACTCAATTCATGCTCATGCCGCTGGCCGAAGCCTACGCCCGCAAAACGGACTGGCTGGGCCACGGGCCGCCCGACTGGACGTATCATTGTCATCAGGCGTTGACACTCATTATATAACTTAGTTTTAAACCAAATGCATAAAATCGGCATTCAGGACCAGCAAAAAAAGAGGATAATACTTATGAATACCAGTATATTACAAAAAAATGCG # Right flank : CCCCCACAGCCATCCGTAAGGCAGCAATGCCAGGGTATAGGTACGAGTCTGACGGAGAAGAGATCAGTATAGCAAGAGGCCACACCATTGACATGAAATACACTCGCAAACGGGTTAACTGGCTGGCCCGGCAGTTCGGCCAGTTGACAGACCCCGCCAGTCTGAGCCAGCTCCTGGGCGTTCAGCTACATCTGCTGCAACTGCTGGCCCTTCAGCCACGCTACAACACCTTTCGGGTACCGAAGAAAAACGGCACGTTCCGACTCATCGAAGACCCGGAGCCTCACCTGAAGCAGGTCCAGAAACGGCTCAACACCTACCTGCAATGTGTGTATTATCTGCGCCGGACCCCGGCGACATACGGCTTCCAGATCAGTGTGGACGGCGATAACGACCCGCGCAATATCCTGACTAACGCTCGTCGGCACGTGGGTAACCCCTGGATGCTCAACGCCGATTTCCTGGACTTTTTCCACCAGGTCAACTATGACTGGGTGTAC # Questionable array : NO Score: 2.71 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.55, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGAGAGTAAGTCTGACGGAGAAGAGATTGCGAC # Alternate repeat : GTAGGAGCGTAAGTCTGACGGAGAAGAGATTGCGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 3 743584-742806 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBLB01000002.1 Spirosoma sordidisoli strain TY50 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 743583 37 100.0 36 ..................................... CGAGCCTGCTTGATGGCAAGCCCAACGGCGGTCTGT 743510 37 100.0 39 ..................................... ATGTTCGCCTGCTCTTCAATGAGCCACGTTTTGCGCAGG 743434 37 100.0 37 ..................................... GAAACCCGAGCGGGACGAGGACGACGGTGAGCTTGTC 743360 37 100.0 38 ..................................... TACTTCTTGATTTGCTCCTCGCTCAGCTCCTCGCCATC 743285 37 100.0 37 ..................................... GAAACCCGAGCGGGACGAGGACGACGGTGAGCTTGTC 743211 37 100.0 36 ..................................... TCCATGCCGATCCGATTGCAGCGGGTCAGGGTCGGT 743138 37 100.0 36 ..................................... TCCATGCCGATCCGATTGCAGCGGGTCAGGGTCGGT 743065 37 100.0 39 ..................................... CCGGTACGGTTGTTCGCTATCAGGGCTATCTAACGTTAG 742989 37 100.0 36 ..................................... TTCGCCGACGGGGTCTTGTCAATGATCTCCTGCGCT 742916 37 100.0 37 ..................................... TGTTCAGCGGGATACCGGCCCCTTTCGCGGCTATGTC 742842 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 11 37 100.0 37 CTTCGAAAGGTTGATCCAGTTAAAGAAGGATTGAAAC # Left flank : TCTGGAACGCCAGCCTTGCCCAACGGCTGTTCAAGAGTCAGAACGGCGAGCTGAAGCTGTCGGTCTTCGACCTGCTTAATCAGAACAACAGCATCAGCCGGACCTTTTCGGAAACCTACCTGGAAGATAACCGCTCGCTGGTGCTGAACCGGTATTTCATGCTGACATTCACCTACAACCTCCGCCAGTTCAAATCCTGAGCCGGAACGGGCTGTGTGGCCAACAGTGTGTATTTAGGTAAAGGTCACGGAGACAAGCGCCCATTGGGTAACTTGCAGGCTGGGTACTAACCCAGGTTGGCAGACCACTGCCGGGCACCAATCTATTGGCAGGCCCGGCAAAACATGCGCCATCTGCCTTATTTTCAGCTTTTTACGCGTACGGAAAAGTAGATAAAAATGTCGATCAACAATGGTCTTTGACGTATTGAAAGGGGTAAAAAAACAACCAGCAAATCAGGCATACCTCCCTGACAATGAATTATTTATGCACCCAAACCA # Right flank : GCGTTCACCTGACCAGGCACGTTGACCAACATACGCTCTTCGATTAGTCTCCAGTGCCCGGGCACTCCCCTTTTGCAACGGTCCGAATTCCCGACGCCATAGCCACACAGGCATTGCCATAGGTTTTACCGTTGCAGCCGCAAACCGGGTCGTACTGCATGGTGCAACCAATATCCGGGTTGATTTTTTCTACGCAATCAGCCTCTACCGCTACGGTTCGGGATTCACAGCCAAATCCAGCCAGCAGCACAAATACCGTGAAGAACGTTTTCATACGGTTACAGCAGTTTTTGGATAATGATCCATAACTAACCAAAAGGGTTGTAGTTGGCGTTATTTTTTAGTGATGATGCTGCCAGCCGTGCTTCAGAGTTGTCGGAGAAAGGTAGTAGCCGACTTTACCTGGCTCGAGTGAGAGAGCTCTTTCACTCCCAGCCCCGCGACGGCGGCCCGGCCTAAGAGGTTGTTTGGGGAAGTCAGTTGAGAAGGTAAAGCCGTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCGAAAGGTTGATCCAGTTAAAGAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA //