Array 1 45678-41807 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL997433.1 Streptomyces scabiei strain NCPPB 4086 scf_65433_207.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 45677 29 100.0 32 ............................. TCCCGCGTTATGTACTCACGCTACCGCTCGAT 45616 29 100.0 32 ............................. AGCTGGAGATTGGCCGGTGTGCTCAGGTCCGC 45555 29 100.0 32 ............................. CCGTCCGTCGGCGTCAAGCTGGGGATCGCGGC 45494 29 100.0 32 ............................. CTCACCGGTGACGCCACCGCTCGCGCGCAGTC 45433 29 100.0 32 ............................. GCCTCACCCCGCTGCGGTACCGGCCCCGGCAC 45372 29 100.0 32 ............................. ATCGCCACCGCAGACTCCATCGACGGCGCCAT 45311 29 100.0 32 ............................. GCCGGTCACAGTGCTGGAGAGACCAAGCTCCG 45250 29 100.0 32 ............................. CCGGAGTGCGCTTCCGGCCCCGCGGCGGCAAC 45189 29 100.0 32 ............................. TCAGGCCCGACACCGGCGCCAGATCGGCGACA 45128 29 100.0 32 ............................. GCGCTGGAGGTGGAAGGGGTCTGGCGATTGGG 45067 29 100.0 32 ............................. CAGACCTATGACCAGACGCGCACTATGACCGC 45006 29 100.0 32 ............................. TCGATGACCCCGTTCCAGATCCTCTACCGGCT 44945 29 100.0 32 ............................. TTGGTGTACGTCGGGGTGTCGTAGGGCTCGCC 44884 29 100.0 32 ............................. TCGGTCGGGGAGCCGCTGCACACGCTCGGCAC 44823 29 100.0 32 ............................. CCACGGCCAGAACCCTTGGACCGGGCGATGAA 44762 29 100.0 32 ............................. TTCACCGACTTCTCCACCCGGACGCTGCGCGA 44701 29 100.0 32 ............................. CTGCCGGCCGCGTTCTGCCACAGCGGATGGAT 44640 29 100.0 32 ............................. ACGCTGTCGATCGCGTGGAACCTGCGACTCGC 44579 29 96.6 32 .........C................... AATCCGTCCCCGGGGAATTCCGTCTCGTACTC 44518 29 100.0 32 ............................. AACCTCCAGCTTCCCGACGCCGATGACGACGT 44457 29 100.0 33 ............................. GGCACGCGTCACCTGCTCGCCGCCAACTTCGCG 44395 29 100.0 32 ............................. TCGTCGAGCCAGTGGAGGACGAACACGCCGTC 44334 29 100.0 32 ............................. CCCGCCGTGGGCACGCCGCGCCAGGCGCCGAA 44273 29 100.0 32 ............................. TAGACCGGGGCGGACAGGGTGGACGACAGGGA 44212 29 100.0 32 ............................. ACGCACCTTGCTCTGCCCCTGCTCGCGCGGTC 44151 29 100.0 32 ............................. AGCACCGGGACGCTCGCCGCGACCACGGTGCC 44090 29 100.0 32 ............................. TCCTCACCGCCATCCGCAATGCCCTCGACCAG 44029 29 100.0 32 ............................. GCCCTCGGCTACACGCGGCTGATCACGTACAC 43968 29 100.0 32 ............................. TTCCACGGCGACCGGTACCGGGAGTTCTCCGA 43907 29 100.0 32 ............................. TGGCGACAGCTCGCAGGCGAGCTACGCGCCAA 43846 29 100.0 32 ............................. CCGGTCCGTTCCCCCGCCAGTCCGTCGACGAA 43785 29 100.0 32 ............................. GCGTCCGCGATGATGTCGGTGTCGCGGGCGCC 43724 29 100.0 32 ............................. CGTGGAGGTATGCGGGGAACGAGACCCCGGAC 43663 29 100.0 32 ............................. CAGCCGTACCAGTCGTCCCCGGCAGTCCGTGA 43602 29 100.0 32 ............................. TGGAAGACGGGCTGCTCGCCCCAATCGTGGTC 43541 29 100.0 32 ............................. CGAAGCGCACGGGCATAGCTCGCTCCCAGGAA 43480 29 100.0 32 ............................. ATCAGGAACACGGTGCCGGTATCGCCGGGCGT 43419 29 96.6 32 ............G................ ACCGGCGTGGTTTTCCCGCGATTCAAGCCCAC 43358 29 96.6 32 ..A.......................... CGCCCGTGGACACGGCAGACCTCGACTACGAC 43297 29 100.0 32 ............................. GACGACGAGCAGTGGGCGCGCACCGAGACGAC 43236 27 86.2 32 ........A...--...........G... ACGAGGCGGCAGGTGATGACCGCGTACGCCGG 43177 28 82.8 32 ............A..ATA...-....... TCTGGGTGGAAGCTCGCGTTGTCGAGCCGGTC 43117 29 93.1 32 ..A.........................A CAGGCGTGGCGGTACACGGGCAACGAAACCCC 43056 29 100.0 32 ............................. CCGTGGATGTCCCGGTCTCAGCGGGGGATCGA G [43037] 42994 29 96.6 32 .............A............... GTGCGCGCGTACGTGCACGAGCTGTACGGCAT 42933 29 93.1 32 .....................A.....T. GACGAGTACAAGGCCTACAGCAACGCCTTGGC 42872 29 100.0 32 ............................. TTCTGCCCGCGCGCCCGGCTCACCGGCAAAGA 42811 29 89.7 32 .......T.....AG.............. TTCCAGCTCCAGACGGACGGCGTTCTGGCGCG 42750 29 93.1 32 .C.......................T... TACTTCGCCTTCGAGGTGGACGATGTCGACAA 42689 29 93.1 32 G.......T.................... CAGCGGTTCAAGGCGGCCGTCGCCAACCGGGC 42628 29 96.6 32 .......................A..... CGCCGGTACGTGCGCGTCGGGGCATCCCACTG 42567 29 100.0 32 ............................. AGGTGCTGGGCCTCGCGCTCTGTACGGGTCTG 42506 29 96.6 31 ...G......................... ATGTCCACGAGCGTGCGTACCCACTGTCTTT 42446 29 96.6 32 .....G....................... AACAAGATCGACCCGCGCGTGTACACCGCGCA 42385 29 100.0 32 ............................. AAGCGAGCCAAGCCCCCGACGCTGGAGCCGGT 42324 29 96.6 32 ..........T.................. TACTGCGACAAGGACCAGTACGTCCTCTACAT 42263 29 96.6 32 ...........A................. GACATCGACGCGGCGGGCTCCCTGGAGCCGAT GC [42244] 42200 29 93.1 31 ...A........G................ TCGGCGTCCACGACGATCGGCATGGACCGTC 42140 29 86.2 32 ............TA..T........T... GCGACGATCACCGCCCCCACCACCACGGCCAA 42079 29 86.2 32 G...G.......T............T... ACGGGAATGCTCACCTCGCAGCAGATCCCGCT 42018 29 93.1 32 G....G....................... TCGTCAAGCGGCTCCATCTTCCGCACCACATG 41957 29 100.0 32 ............................. CCGCCGACGGTCGAGGAGCGGCTGACCGCGCT 41896 29 89.7 32 ...T.......AT................ GCGGCCTACGAGGCCCGCTACGCCCGCGTCGC 41835 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================= ================== 64 29 97.6 32 CTGCTCTCCGCGCGAGCGGAGGTGAACCG # Left flank : GTCGCTCCGAACCGCCGCGTACGCCTCCGGAACCTGAGCCTGGAACGGAGGAGTGATCTTCCCCAGATCATGCAGCCCCGCCCAGAACGCCAGCACCTGCCGGGCCTCGGCCATCGTCAGCCCCAGCGCCCGAGTGACCTTCTCGCGCACCTGATCGCTCAGCAGCGCATCCCACAGTGCGCCGAACACTGCTGCGGTGTCCAGCAGATGGCAGACCACTGGGTATGGACGCGGAAGGCCGTGTTCCTTGCCCCACAACCGGATGTCGATCGGGGGATGCCCGGGAGGGACGGGCTCACGCTTCATCATGACGGCAACGGATAGCAGACCCCACTGACAATGCGCCCCCACCTGCGCGAAAACCGAACGCAGCCAACACGGGAACGTAAACTCCACACCATGGGGCCACAGTTGACGCGATATCTCGCCGATTCAGAGCGAGCCCATCCACACGCCGTAAAGAACTTGCAAAGTGCCTCAAGAAGCCCAGGTCAGCAAGT # Right flank : TACGGCGGCAATAACTTCGCGGGGTGGAAGGAGTGCTCACTGTCGAGAGCGTCGTCCCGATACGGTGTGCCCTTGAAGGACGGTCAGCCCGAAGGCTCGCTATGCTCTGCGTAGATGTCTTGGCCAACGACACTGGTCATAGAGGCTCCGCCCCGACTGCCGACTGTTGGGGTGGAGCCTTCGCGCGTTGGAAGGGAAATCCGCTGCTCTCGGTTTTGGAGCCTGCCTCTCAGCTGGGGGGACGGCTGCTGTGGCGGCCGGACTGCTCCATCCAGGACGTGTTCGGGACGCAGGTTGGACACAAGGATCGGAAAAGACTGACAAGGGCCGAGAAGGAGTACGGCGCCAAACCGCGTCTGAACTGGGAAAAAGGCCAAGATGAGCATTGATCGACAAGGGTCGCCAAGATCCTCAAAGGACTCATAATCCGTCGGCCGTGGGTTCGAGTCCCACCCGCCCCACTGTGCAGGCTTCTGACCTGCGGAAACGTTCATTTTTGA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCTCCGCGCGAGCGGAGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCTCCGCGCGAGCGGAGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [34-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 55428-58021 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL997433.1 Streptomyces scabiei strain NCPPB 4086 scf_65433_207.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 55428 29 100.0 32 ............................. CTGAGCAGCGGGCCCGTGAAGCGGCACAGAGG 55489 29 100.0 32 ............................. TCGCCTGAGTCCACGGGCGGGAGGTAGGCGTG 55550 29 100.0 32 ............................. GCTGAGGGGCTGGCAGAGGCACGCCAGGGCAG 55611 29 100.0 32 ............................. TCACACCAGCCACTTGGCGAGCCGGGGAAACA 55672 29 100.0 32 ............................. GTGGGGCCACCGACGCGACGGAAGGCGAAGCC 55733 29 100.0 32 ............................. ATCACATCAGCGTGGACGGGTGCGCCGCAACC 55794 29 100.0 32 ............................. TCCTGCCCCGCCTTGGCGGCGTCGCTGAGCCA 55855 29 100.0 32 ............................. CAGCACCGTCTCCCGCCGGGCATGCCAGCGTT 55916 29 100.0 32 ............................. TTCGACGAGGCCATGGAAGAGGCCGACGTCGC 55977 29 100.0 32 ............................. CAGGCGGCAAGGGAAGGCGTCCGCTGGAGGAT 56038 29 100.0 32 ............................. CCCGGATCTCTGCCGATGTCTTTCGCGAGCTG 56099 29 100.0 32 ............................. CGGCCGTTGACCATGTCGAGGGCGCCGGCGTT 56160 29 100.0 32 ............................. ACGTGGGGCCTCTTCGTCGACCCGCAGGTACC 56221 29 100.0 32 ............................. TCGGACTGTCCCCAGTAGGCGGCGGTGGGAAT 56282 29 100.0 32 ............................. GCGCCGGAGCCCGACGCCGGAGCAGGGGCGGG 56343 29 100.0 32 ............................. CTGTGGACGCAGGCGAACCAGGCCGGTCACCT 56404 29 100.0 32 ............................. GACGTGTCCACTTCGGCGTTGTGGGGGTCGGC 56465 29 100.0 32 ............................. GCGCTGATCGAGTACCTGACCAAGAACGGCGA 56526 29 100.0 32 ............................. TCGAACGTCCCGCTGACCGTGATGTTCTCGAT 56587 29 96.6 33 ............................A GTTCGGGGGACCGCCCCCCGTTGGAGTTCGGGG 56649 29 96.6 32 ............................A GCGGCGCACCACGCTCGTCGACGCGATCCTCC 56710 29 96.6 32 .......T..................... GACCCGGTGGCGCAGACGATTCTCCGGTTCGA 56771 29 100.0 32 ............................. AACCTGGGCAACCAGTTCGGCATCACCCTCTA 56832 29 100.0 32 ............................. CTCACCGCGTACACCGAGGTCCCCAACGAACT 56893 29 100.0 32 ............................. CGGATCCGGTTGAACGGCTGGCTGGTACGGGA 56954 29 100.0 32 ............................. TTCCTGGACGGCACGTTCGAGCCGATTCCGGC 57015 29 100.0 32 ............................. ACCCAGGGGGCGCCGTCGGGGTGGCGGACGGA 57076 29 100.0 32 ............................. GAGGGGAAGGCCGTACGCGTCGGTCTCGGACG 57137 29 100.0 32 ............................. TCAGAGGGTTTGGTGACGGTGACCACCCGAAT 57198 29 100.0 32 ............................. GCCCATCGTCTTGCCTTCCTGCATGTTCTGGG 57259 29 100.0 32 ............................. TCCGAGCCGACCACCGACACGTCGGCGCCGCC 57320 29 100.0 32 ............................. CTCTTGGTGAGCTTGAAGTGGTTGCGGCTGGT 57381 29 100.0 32 ............................. TGCGAGTCGCTTATCTGGGTGCTCCTCCGGTG 57442 29 100.0 32 ............................. CGGAAGCTCGAGGAAGAGGTCGCCGCGCTGAA 57503 29 100.0 32 ............................. CTGACGACCAACCCCGGCGTGTGGGTCATGTC 57564 29 96.6 33 ............................A GCTCAGGGACCGGTTCGCCCCCCGGCTCGGCTG 57626 29 100.0 32 ............................. CCACCGAACACGCTGCTCGACTTGGCGAGGTC 57687 29 100.0 32 ............................. ACTCTGCAGGGGCGGTGACCGATGTTCGCCAA 57748 29 100.0 32 ............................. CCGACGAGGCTCTCCACGCCGAGCCGCCCGGC 57809 29 100.0 32 ............................. TCGTACCGGAGGGCGCCACCGGCCCGGCGCCC 57870 29 100.0 32 ............................. GGCATGCTCGTCACGAGCGACCGGTTCGATTC 57931 29 96.6 32 .C........................... TCCCCGATCGTCATCACCGGTACAGATCGGCT 57992 29 93.1 0 ..A.........................C | T [58017] ========== ====== ====== ====== ============================= ================================= ================== 43 29 99.4 32 GTGCTCTCCGCGCGAGCGGAGGTGACCCG # Left flank : TCACCGACATCCAGGACCTCCTCGATCCGGGATCCAGCCGGGACGTCCCCGATCCCGAGGAACAACTCGTCGACCTGTGGGACCCGGTCATGGGCCCCGTGCCCGGCGGCGTCAACCACGCCGCCGACACCTGACCACCCGACCCGCTCGAAGAGGAAGAACGCACCGCCATGGCCTCCATGATCGCCATCTCCGCCACCGCGGTCCCCGACCACCTCCGAGGCGCCCTCACCCGCTGGCTCCTCGAAGTAACACCCGAGCTGTACGTAGGCACTGTCTCGGCCCGCGTACGCGACGAACTCTGGGCTTCTGTGACCGCATGCACAGGCGACGGAATGTCCGTCCTTGTCTACCCCAGTGACAACGAGCAAGGCTTCGAACTCTGCACCGCAGGAACCCATCGACGCCACCCACTCGACTTCGATGGCATGACCCTGGTCGCGTTCCAGGCACGAGGTAAAGAAACCGCAAAGCCGCTCTAACGGTGCAGGTCAGGAAGA # Right flank : CTCCCCGCGACAGAGCGACCAGGTCTTTGAGTCCCTTCGGCCGCGCGCTGGATTGAGGGTCGGCAGGCTGCGCCACACAGGGTGTGTGTTGTGGTCGTGGTCATCCTCGATCGCGGGGTCGCGGCGCGGTCGATCGAGGCCTTCCCAGGGGCAGGCGAGGCAGGCGCCGCGGTGTATCCATCTGATGTCGGTGACGAACTGGGTGGTGAACCCGGGGTCCGCGTATCCGATGGACCAGGTCTGGCCGAGGACTTCTGTGTCCGCGTTCCAGAAGGTGGTGTAGTGGCGCTGGCAGGCGATGGCTCCGGTGTCGTTGCTCATGGTGTTCCGGAGGGAGCGCGGCGCGGGTCGCGCTCCCTGATCGAGTCGTACGTGGTCAGGTGGAGCTGGCCTTCGGGCGGCCCTTGGGGGTGCGGCTGCGGGGGCGCCGTTTCGTGGTGGGGCCGGTCTCGGCTGCGGGTTGGGCATCCGCTTCGCCGCTTATCGCGCCGGAGGGCCTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //