Array 1 545802-541657 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046400.1 Pseudodesulfovibrio cashew strain SRB007 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 545801 32 100.0 34 ................................ CCCGCTGGTCTCCAACGAGTCCTTGACGGTCACC 545735 32 100.0 35 ................................ TTTCCTCCATCCCCTCCGCCGCGGGGAACCACCTT 545668 32 100.0 34 ................................ TTGAGAAGTTGACAAACAGTCGCTGCCAAACCAT 545602 32 100.0 34 ................................ CCTCTGCCACCACAGAACTTGAGCCGAAAACAAT 545536 32 100.0 34 ................................ ATCTATCAGGGCACCGGCATCCGTGGCCGTCACA 545470 32 100.0 34 ................................ CCTTTGCCCTTTAGGGCGGTTAAAATGTGATCAA 545404 32 100.0 33 ................................ TTATGAACTTAAAAAGGCAGCAAAAGTTACTGG 545339 32 100.0 34 ................................ GTATGACGCAAAAGGTCCGGCTGTTTCAACTTTT 545273 32 100.0 35 ................................ AGGTTGAAGGTGCTGCGCGCGCCTGAAATGGTGAA 545206 32 100.0 34 ................................ ATCCAGGATGTCTGACGCCGGAAGGGAGTAAAGC 545140 32 100.0 35 ................................ GGTCATTGCCATTATAGTTGAGATAAAATCATCGT 545073 32 100.0 34 ................................ AAGTACATCATTCTGGGCGTTATGGCCGCTGCAA 545007 32 100.0 34 ................................ CACAAGAAGGCGCGGACATAGCCGGATATGCTGG 544941 32 100.0 35 ................................ ACCTTTTTAAGTCTGACGTTTCCGAAGTCGAACTT 544874 32 100.0 35 ................................ ATCGACGAGGCAGGCGACGTAATAGGCCACGCGAA 544807 32 100.0 34 ................................ CATTTTTCCTTGTCCAAGTTACCGTATTTTTTGG 544741 32 100.0 35 ................................ GACTATGACAGAGTCTCTATCCGCCCCGGACTCCA 544674 32 100.0 35 ................................ ACCTGCCCTTTGCGCTCACTCGCGCTATCTCTCCC 544607 32 100.0 34 ................................ CATATCTACCCAGGCGGGAACGCCCTAACCATCG 544541 32 100.0 34 ................................ CTTTATACGTCCGGCGAAGGCGTTGCCCCCGGCG 544475 32 100.0 34 ................................ CTTTATACGTCCGGCGAAGGCGTTGCCCCCGGCG 544409 32 100.0 35 ................................ CATCTACCCTTTCGCCGGATGAGGAAAGTTATCAG 544342 32 100.0 34 ................................ ATACCACGCGCCGGTTTCGGCCTCTGTCGCCGCT 544276 32 100.0 35 ................................ TGAGAGCGTGCCGCCCCTCGCCCCGGCCCAGGATT 544209 32 100.0 34 ................................ GATGAACTCTATATTTAACGCTGTTGGCTTCGTT 544143 32 100.0 35 ................................ ACCGAAAGAGGCTAGCAAGGGCGGCAAGGGGTTGT 544076 32 100.0 34 ................................ TCCTGCGGCGGCGGGAAGCGCCGGGGTATCCGGC 544010 32 100.0 35 ................................ TCGTCGGTTTGGCGGCTGGCGCGGCCTTCCTGGGC 543943 32 100.0 34 ................................ CCTGTGGATCGACCAGGACATGGTCGTCGCTTCG 543877 32 100.0 34 ................................ TGGCATATTTGACGCGGCGGCTGTAGTTACTGGA 543811 32 100.0 35 ................................ TCTTCCCCTTTTTTATCCCGTCAACAGCCTTGAGC 543744 32 100.0 34 ................................ TATTTACAACGTCGGGTTGATTTTGGGTTGAATA 543678 32 100.0 35 ................................ CACCCTCATCGCCGACACCGACGGCACGGTGCGCA 543611 32 100.0 34 ................................ TATTTACAACGTCGGGTTGATTTTGGGTTGAATA 543545 32 100.0 35 ................................ CACCCTCATCGCCGACACCGACGGCACGGTGCGCA 543478 32 100.0 34 ................................ CTGCGCAGAATCTGCATGTTGTGACACTACTTAA 543412 32 100.0 35 ................................ CTGGACTTGCCTGTGCCTAGTTCCCGAACGTCAAT 543345 32 100.0 34 ................................ CGCTCAACGACGGGACCGACTTTGAAGTCACGGA 543279 32 100.0 34 ................................ CTTGCGTCCGATCAGCAGACCAAGAAGCAGCTGG 543213 32 100.0 33 ................................ GGTTCAACCTCATGTGCCCGCCTCGGCACTTGC 543148 32 100.0 34 ................................ ATCATGGATGCGACGGAAGTACCCGCCATGTGTG 543082 32 100.0 34 ................................ ATCATCGATCTGAACGGGCTCCGCATGTCCAAGG 543016 32 100.0 35 ................................ CTCTGCGCTGCCCGATCTGCCGATTACGGCGACCA 542949 32 100.0 34 ................................ CGTCGAAATCGACAACATCCCGCGTTCGGCCCGT 542883 32 100.0 34 ................................ CATAGGCGATCTGTCCACATTTACCATACCACCC 542817 32 100.0 34 ................................ ATTCGACCTTCCTATGCTACCCCTGCCGTGTCCC 542751 32 100.0 35 ................................ GCCGTGTAACACGTAGTTATGCCACGAATTGCCCT 542684 32 100.0 35 ................................ GCCGTGTAACACGTAGTTATGCCACGAATTGCCCT 542617 32 100.0 35 ................................ AGCCGCATAGGCAAGACCTCCAGTAACCACCGCCG 542550 32 100.0 34 ................................ TCGAAGTACATCGTCACCGGCCAGCGCCAGGGGT 542484 32 100.0 34 ................................ GCTCAACGTCTGCACATCATCCGCACCCTGACCA 542418 32 100.0 35 ................................ GATATCCGGTGCGCTGGCCCGGCCTGCTTCGGCGT 542351 32 100.0 35 ................................ TGGGCAAAAAGGCGACCCCGGTTGCCCGCGTCCCG 542284 32 100.0 34 ................................ AAGCTCGTCGTCGCGCCTTTGGCTTACCCCGCCC 542218 32 100.0 35 ................................ AAGCTCGACCTCCGAAACGTCGCTCTTGAAAAGGT 542151 32 100.0 35 ................................ CTGAACGTGTTGGCGCGATGTCCGCTCCGCGTCTT 542084 32 100.0 34 ................................ TTTCTCGTCCCCCGGCGGTGCCGGTAGTGACCGA 542018 32 100.0 35 ................................ CGGTAAAAAGGCGCGGAACGTCCGTATATCTCCGC 541951 32 100.0 34 ................................ AAGTTGTAAAAGTGATCTACGTACCCCTTAAAAT 541885 32 100.0 34 ................................ ACGGAACGGGCGCGGACCTCGTAGGTGTACCCGT 541819 32 100.0 34 ................................ TGTTTGACAATCTGATCAGCCACTAACACCACCC 541753 32 100.0 34 ................................ ATATTGTCCTCAACCCGCGTAATCCGTTTGTCGA 541687 31 90.6 0 ..................-....A.......T | ========== ====== ====== ====== ================================ =================================== ================== 63 32 99.9 34 GTCGCCCCCTGCACGGGGGCGTGGATTGAAAC # Left flank : GCTACCCGCCGTATTATTGGAAGTGAGCATGTTGGTTTTGGTAAGTTATGACGTGAGCTTCGAGAATCCGGACGGCAAGCGCCGCCTGCAGAAGATCGCCAAGATTTGCGAGAATTACGGTCAGCGGGTTCAGTACTCCGTGTTCGAGTGCGTGGTCGACCCGGCCCAGTGGGCACAATTGCGTCACCGCCTACTTGATGCCTACGACGAGGAGGTGGATAGCCTGCGGTTTTATTTCCTCGGTAAGAACTGGCAAAGGAGAGTGGAGCAGCACGGCGCGGGCGAGGCTTACGACCCGGAAACGGATGTGCTCATCCTGTAGCGCGAACCCCAAGCTGTCGCCAATTCCCCGGCGGGTTCGCACGGTGGGAATAAAGAATGATAACGATGCGTTGCAGCGTGTTCGTCGCAACGCGAACAATTTCGTGGTGATGCGTAGTCACTGGTTCGCGGATACCGTGCCTAAAACCTGTATCCTGCGTGCGTTGCGCACCCCCACA # Right flank : GGCAGACACATCTGCCAAGAGAGGTCGGACCTAGGTCGCCCCCTTCTCAAGGGCATATAATTTAGCAAGTTGCTCTTTTTACTTGGAAGATGGGAATGCTATGTGTGAGTAACTTTGTGAGTAGTTCTTGAAGAGTTGTGTGTGTATTTACTAACATACTAGCTGGTTAAAGATTTGATTCACGTCCCTCCCCTGTACCAGAGTGAAATCAGGACGTTAGATTGCATCTTTAGATGATCTGACGTCCTGTTTTTTTTATGGATGATATACAAAGCGCCATGGCAATGTGGCGACGTTGTTGCAAGACATTGCGTTAGCGAGAGATCGTCGATTGAGACATCGTATGTCTGGATGGCTTGAGTGACATGGTTGAATGTCACCCAAGCCCTGCTTTTGGGGAGACGAAGAATGCCAGGGCAATCAATCCGGGTCCGGCCAAGGGGCCTTGGATCGTAGGCTTTCCAGTCGTAATGTAGACCGAAGGGCCTCCAGGGAATCAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTGCACGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCCTTCGCGGGGGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //