Array 1 6253-5289 **** Predicted by CRISPRDetect 2.4 *** >NZ_NYRU01000095.1 Listeria monocytogenes strain CDPHFDLB-F14M01624.66-2 F14M01624-66-2_Contig_95, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6252 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 6186 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 6120 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 6054 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 5988 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 5922 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 5856 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 5790 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 5724 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 5658 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 5592 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 5525 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 5459 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 5393 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 5327 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5292,5295,5300] ========== ====== ====== ====== ==================================== =============================== ================== 15 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TCTCTATTACTTTTGTAT # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1845-27 **** Predicted by CRISPRDetect 2.4 *** >NZ_NYRU01000117.1 Listeria monocytogenes strain CDPHFDLB-F14M01624.66-2 F14M01624-66-2_Contig_117, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1844 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 1778 36 100.0 30 .................................... TCTAAACGATCCATTTGTATATTGTGTTAC 1712 36 100.0 30 .................................... TTGTAATCATCTTCACTTCTCATATATAGG 1646 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 1580 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 1514 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 1448 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 1382 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 1316 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 1250 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 1184 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 1118 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 1052 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 986 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 920 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 854 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 788 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 722 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 656 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 590 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 524 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 458 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 392 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 326 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 260 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 194 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 128 36 100.0 30 .................................... AGTATTTATTATGACTATTACTTTTGTATA 62 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 28 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : ATCTGAAAACAAAAACTACGAGT # Right flank : CTATATGAACAGGGATATCCGCGAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [25.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 31390-30837 **** Predicted by CRISPRDetect 2.4 *** >NZ_NYRU01000020.1 Listeria monocytogenes strain CDPHFDLB-F14M01624.66-2 F14M01624-66-2_Contig_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 31389 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 31323 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 31258 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 31194 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 31128 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ATC [31119] 31060 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 30995 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 30930 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 30866 29 93.1 0 .......................C....C | A [30841] ========== ====== ====== ====== ============================= ===================================== ================== 9 29 99.2 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : GTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGTCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //