Array 1 7515-8213 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYAW01000030.1 Salmonella enterica subsp. enterica serovar Muenster strain BCW_2740 NODE_30_length_54330_cov_1.65555, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7515 29 100.0 32 ............................. CCCAGAAAAGTTTGTTTAGGCAATCAAGCCCC 7576 29 100.0 32 ............................. GCGTATGAGGGCGCGCAACAGGCGATGCGTGA 7637 29 96.6 32 ............T................ CCGAAATACGATGCCGGAATATCGTAAACGGA 7698 29 100.0 32 ............................. GGAGGACGCTACTATCGGATTCGCTCCGGGGA 7759 29 100.0 32 ............................. GATTTACTAAGGTCAACAAGGGATTGAATTGG 7820 29 100.0 32 ............................. CTCATGCGCAGCACTGGATCGAGAGCGAAGGG 7881 29 100.0 32 ............................. GGTGAGAACAGGGTGCATGGGAGGGAATAATT 7942 29 96.6 32 .....T....................... CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA 8003 29 100.0 32 ............................. ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG 8064 29 93.1 32 ......G..................G... GGGATCGCGTTGGCGGTCGCATCCGTTGCCGT 8125 29 93.1 32 .....A......T................ TACCAACAATTCAGCGTTACGCCAACGGTAAC 8186 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 96.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 24769-28826 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYAW01000030.1 Salmonella enterica subsp. enterica serovar Muenster strain BCW_2740 NODE_30_length_54330_cov_1.65555, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 24769 29 100.0 32 ............................. CAGCTTTAGCATCGGTCGACAGCCCATCTGGC 24830 29 100.0 32 ............................. CGTCCTTTACATCCCAGACCACACTAACGTCG 24891 29 100.0 32 ............................. CACTCGCTGGAGCTGGTTGTCGCTATCAGCAA 24952 29 100.0 32 ............................. ATGAATCTGTAATTCGTTATAGCTCATCATTG 25013 29 100.0 32 ............................. ATACGCTCAACCTAGCTCTTACTCAACTACAT 25074 29 100.0 32 ............................. GGGCGGGTAACAGCGTGCTTGGTTCTGGTAAC 25135 29 100.0 32 ............................. AGAAAAACCGCTTTGTAATTACTGGTCATGTT 25196 29 100.0 32 ............................. CGTGTCAGCCAAGGTGCAACGCTACTACGCAC 25257 29 100.0 32 ............................. GAAGGTGTTTTTTATTCAAAAGATAGGATACC 25318 29 100.0 32 ............................. CCAGTTTCTAACGATATCGTCCACCAGCTTCG 25379 29 100.0 32 ............................. TATGACTAATGCACAGTTAAAACGGGTATGGG 25440 29 100.0 33 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGAC 25502 29 100.0 32 ............................. TCAGCGCCGGCGATCGGGCCGCCGATTTTGTC 25563 29 100.0 32 ............................. GGCATGTCGTGGTTCAGGATGAGAAAATCCCC 25624 29 100.0 32 ............................. ATATTCAGGAGCGTATCGTGGCCGAGATCGCA 25685 29 100.0 32 ............................. CGGCCCCGTATAAATCTCGTGGCGCACAAATG 25746 29 100.0 32 ............................. CTCGCGCATTGTCTTTTGATCCCATAGCGTAT 25807 29 100.0 32 ............................. GCGATCTTAAATTTGCCGCCGCGTAATTTTTG 25868 29 96.6 32 ............................T CGCCCACCCTGAGTATTATCACTACTCCGGAC 25929 29 100.0 33 ............................. CCAGCGAGCGCTGGCTTCAGGATGGGGTTAGGC 25991 29 100.0 32 ............................. GGGCCAATAAATGACGCTAAAACGCGCATATA 26052 29 100.0 32 ............................. CCCTGGTAGAACTTTATACGCAAGCGCTTATG 26113 29 100.0 32 ............................. TCTCTACACAGGAGCACAGGACATGAATAGCA 26174 29 100.0 32 ............................. TAGCCGTCATTACAGAATTAATTACACGTGAA 26235 29 100.0 32 ............................. CGATTGTCCAGATCACATAAATTTGTATAAAA 26296 29 100.0 32 ............................. CAAATGGATTAGTGATAGCCTCCTTTTATTAT 26357 29 100.0 32 ............................. TATTTCACTGACTGACTACGGCGGATCGAGTA 26418 29 100.0 32 ............................. TCAGGAAACAGCGCAATATTGATTTACTCGCA 26479 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCGGAGATGGTG 26540 29 100.0 32 ............................. CATTTTCTCGCACTCTGTCTTGGTCAGCTTCT 26601 29 100.0 32 ............................. CCCATTGAGCACATGCACGTTGCCGGGTTAAA 26662 29 100.0 32 ............................. CGGCCCGCGTTGGTTATGAAGAAAAGCACTAC 26723 29 100.0 32 ............................. CGCACGATTCCATCACCTAAAAACGACCACTT 26784 29 100.0 33 ............................. CAAAATTTTAACGGCCATGACCAGGCAGGGATT 26846 29 100.0 32 ............................. TTGTCGCGCCTGGTATGTGGTGAGATTTGCAA 26907 29 100.0 32 ............................. TTTGGAAACCATGCCTGATCGCCAATATCTGA 26968 29 100.0 32 ............................. ATTAAATATTCCGCGCGCATTCAGGTACCCGG 27029 29 100.0 32 ............................. GGGAATGCCCCATTTGCAAGCGTCGCGGAAAA 27090 29 100.0 32 ............................. CTGTTTTGTCTCACGCTGGCGACCTCCCTGGT 27151 29 100.0 32 ............................. GCGGGACCGGAGGCGCAAGTGGTGGCGCTTTA 27212 29 100.0 32 ............................. CTTGTTTCTTCTAATCTCTTTTCGCGTTGGTA 27273 29 100.0 32 ............................. ACATAAACGCACGCGCGGGGATCCGAATTTTT 27334 29 100.0 32 ............................. GTGAACGCGCAGAATATAGATGGGGACATTAC 27395 29 100.0 32 ............................. GCGTTTGAATCCTCCTGGTGGCGTATGCAGGG 27456 29 96.6 32 ..........T.................. GCCCGAGACACCCGCGCGTTATTTTTGAACCT 27517 29 100.0 32 ............................. TTTGAACAGGCGCTGAACTGGGCTGATATCGC 27578 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 27639 29 100.0 32 ............................. TATTTTTGCGGGATCAATGTCGGCTCGAGCAC 27700 29 100.0 32 ............................. TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 27761 29 100.0 32 ............................. GTCGGGCTATGCGTCTACAGGCGGCCTCTGGC 27822 29 100.0 32 ............................. ATGCGGCGAACTTTGTCCACCAGTTCGTTACC 27883 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 27944 29 100.0 33 ............................. ATATGCGGAATCACCAACAACACGCGCGCCCTC 28006 29 100.0 32 ............................. GCATACCGCATTTTCAATAATTTCAGCACCGT 28067 29 100.0 32 ............................. TTGGCAATTGACAGTTTGCTGGATGTGGACAC 28128 29 100.0 32 ............................. ATATCCAGCGGGGTTTTATGCTGTCGGTAGAG 28189 29 100.0 32 ............................. AGTTATTCCCGGTGTTGTCTGCGAAACAACAC 28250 29 100.0 32 ............................. ATCGCTTCCAGCCGTTCTTTCTCCTGCATCAG 28311 29 100.0 32 ............................. AGCGTCTTTCTGCTCTTTCTTGGAGGCTATTT 28372 29 100.0 32 ............................. CCGCTGGCGGTGAATACCATGCGGCGTATCGC 28433 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 28494 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 28555 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 28616 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 28677 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 28738 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 28799 28 82.8 0 A.....................-.C..GT | ========== ====== ====== ====== ============================= ================================= ================== 67 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTGTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //