Array 1 1671795-1671495 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT906467.1 Corynebacterium imitans strain NCTC13015 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================= ================== 1671794 24 100.0 45 ........................ ACTTGGCGTGGGTGGAAAATGCCTGGTCGTGGGTCGCCGAAACTC 1671725 24 100.0 45 ........................ GTCGCAAGTGAGTGGAAAAACCCTGGTCGCGGGTTGGCGTGGTTG 1671656 24 100.0 45 ........................ ACCGTGGGTGGGTGGAAAATGCCTGGTCGTGGGTTGACGGGGTCT 1671587 24 91.7 45 ...G..............G..... GCTGTGCGCGGTTGTAAAACGCCTGGTCGCGGGTTGGCGGGGTTC 1671518 24 95.8 0 ...G.................... | ========== ====== ====== ====== ======================== ============================================= ================== 5 24 97.5 45 CTAAATGGAGCTAGCTCCATTTGG # Left flank : ACCACGACGCCGATGGTGAATGCGATCCAGACCGTAGGCATCAGCCAGCCGGACGGAGCGAGGTTGGTTGACGAGAGCACGGAGAGACACGTACACACCGCCATGCCGAAGATGGTTTGTGCGACGAAGGTGCCTGTCTTATCGGTGAGTAGTTCGGCACGTCTTGCGTTGGCCTCCGAAAACGGGATCGGGGAGGTGGACGGTATGTTCGCGGTGCGGCGGACCAGGGAACGCGGCGGCACGCAGCAGGCGACCGCGGCGGAGAGGACCGCGCCGATCCAGATCAAGGCGGTCGCGGCGAGGAACGACTTCGGCTCGTACCGGTCGGGGTTGCCTGCGGCGTCGAAGTGCACCGGGATTGGATCCGGGATGGAGTCCCACCGCAGTAGCACGTACGCCAACGTGGCGAGGTAGACGAAGATCGTGGCGGCGTAGTACTGGCGGGATTGCATGGTCTGAGGGTAGCAGGGGCGGGTTGGGGTGGTTGCTGTCTGCGGTTG # Right flank : GTGTGGCAGGGCCCCGGCGAACGCCGTATCCAAAGATGATCGTCAACCATCACTGGACGAAACGAGCGAAATATAATAGAAGGAACAGTATGAATTCGACGAGAAAGCAGGAGCTGGCGAACAAGCTCATGGATAGTAATCGGCAAGAAGACAGGCTCGCACATCGCAAAAGGCCGGCGGCGTACCGCAAGGTTTCGACGCGGTTTTTCATCAAGGTGACGGAATGGGAACAGTTGCGGTACCACGAGAAACGGTGGCTGGCGGCGTATGCGGTCGGTTGTACGGTGCCGCGTGCGGTGCTGTCGGGCCGGTCTGCGGCGCGGATCCTGGGGATCTGGGTGATCGCGACGACGCGCGAGCCGGTGGAGCTGGTCGCACAGCGGGGGAAGGCGCCTTCGCGGAAGCAGTGGCCGACGGGTGTGGTCTACCGGGACAGGTCGCCGGGCGACGCAACCACGCAGCACTTCGACCGGCTACGCACGACCGACGCGCTGACCACC # Questionable array : NO Score: 2.94 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTAAATGGAGCTAGCTCCATTTGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 1721472-1721242 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT906467.1 Corynebacterium imitans strain NCTC13015 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ============================================== ================== 1721471 23 100.0 46 ....................... GGGTCTTCGTCGGTTGTAAAAGCCCTGGTCGCGGGTTGGTGGCTTG 1721402 23 100.0 46 ....................... TGACTTGCGATGTAGGCAAATCCCCAGGTCGCGGGTCGCCGGTTTC 1721333 23 100.0 46 ....................... GGGTGTGCAGCGGGTGCAAAACGCCTGGTCGTGTGTCAGCGGTTCT 1721264 23 87.0 0 ..C.T.................C | ========== ====== ====== ====== ======================= ============================================== ================== 4 23 96.8 46 TCTAAATGGAGCTAGCTCCGTTT # Left flank : TTCCACACGCTCTTCCCAGGCGGCGAGGCTCGCCTCATCCTCACCGAACCCGACGACATGCTCGCCACCGGCATCGAGATCGAGGCCCGCCCGCCCGGCAAGAAAGTCAAGCGCCTGTCCTTGCTTTCCGGGGGCGAGAAGTCGCTCACCGCGCTCGCGTTCCTCGTGGCGATCTTTCGCGCGCGCCCGAGTCCCTTCTACGTGCTCGACGAGGTCGAGGCCGCGCTTGACGACGTCAACCTCCGCCGCCTCATCGCCCTCCTCAAAGAACTGCGAGAGGACTCGCAGCTGATCGTGATCACGCACCAGAAGCCCACGATGGACGTGGCGAACGTGCTCTACGGCGTGACCATGCGCGGCGACGGCGTGACCCGCGTGCTTTCGCAGCGCATGCAGCCGGCGGCTGACTAACAGCGGTTTTGCAGCGGTTTACCTGACGCGGGTGCTCTAACGGTTTTCCTGACGCGAGGTCCTAACGCTCGGTTCCTCACACGGGTCTT # Right flank : TTATAGGAATACCTGGGAACTCGATGGATAGAACAGCGGCTGACTCGCCTGGCCATTCGATTCACTATGGCACTATGGGTGCCATGGATATGGAACTCGCAATGAACTCGCCACTTCTGTGGATCGTTGTTGCCATCGTCGTCGTTGCTCTCATCGTTTTGGGCATCGTCGTGGTGGGACGCAAGCGTAAAGAGGAAAAGACCGTCTCTTTTGCCAAGACGGAGGAGCCGAAGGAGCTCACCCAGCAGGAGAAGTCCGGCAATTACCAGGCCAAGGGTGGCTTTAACTTCGCCCCGGCCGCAGCCCCCAGCACACCGGAGAAGGAGCCGGTGCGTATCGACGAGCCGCGCGAGCCGAAGCCCGCACAAGAACAGCAGGCGGCTGCCGCAGCCCCGGAGCCGGTAGTTGAACCGGACCCGTCGGCCGTTGAGGAAGCAGCCAAGGTTGAGGATGCCGCGAAGGTAGAGAAGACGGCTAAGGTCGAGAAACCCGCGAAGGTT # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTAAATGGAGCTAGCTCCGTTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-1.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 2521219-2523349 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT906467.1 Corynebacterium imitans strain NCTC13015 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 2521219 36 100.0 35 .................................... GAAAAGCGAGGTTTCCGGCAAATTCACCCAGTCAA 2521290 36 100.0 34 .................................... ACCCAATGGGGGCACGATAGGGAGCCGGAGCTTG 2521360 36 100.0 36 .................................... AGGACATTGCCAACGGCAACGGGGAACGAGCGGAAG 2521432 36 100.0 37 .................................... TGGCCACCCAACCAGGCACACAGCCTGTTCGAGAAGG 2521505 36 100.0 37 .................................... TAATGAACAAGTTCAAGGGTCGCCGGGGGAATCCCCC 2521578 36 100.0 36 .................................... GTCACGCACCTAGACACCGTCGCGACACTCGACCAA 2521650 36 100.0 36 .................................... GCCTGCGCGGACGCGACTTCCGGCTTGTTCGGGTCG 2521722 36 100.0 39 .................................... CTCATGATCATGGCCGACGGCACCGAGACCGAGGTCGAC 2521797 36 100.0 37 .................................... TTGAAAGGTCTGGTCCGCATGGCTTTCTCAATTGACG 2521870 36 100.0 36 .................................... CTCAACGCGTTCACCACCAAAAACTCCCCCTCCGGG 2521942 36 100.0 35 .................................... TGCACACCCCAGCCCCGCTGGTCTGTCAGACGCAC 2522013 36 100.0 38 .................................... GGTTCTGCCGACGACATCAAGCGCAACGTCACCATGGC 2522087 36 100.0 36 .................................... ATCTTCAACGGCTTCCGGGTGGGGCCATGCGGCGAA 2522159 36 100.0 35 .................................... GTCATGCACCGCGGGCGGGGGTTCTGCACGAACTG 2522230 36 100.0 37 .................................... GACATGAAAGTGCACCTTAAGGGCGCGACGCACTGGG 2522303 36 100.0 36 .................................... GTCGTCATGGGGCCGTACAGCCTCAACGGATACATC 2522375 36 100.0 37 .................................... CGGGTAAATGTGGTCGATGGTTAGGTTCTCGGTCGTG 2522448 36 100.0 34 .................................... ACCGTGCCCGCTAGGAATCTCCAGCGTGCCCAAC 2522518 36 100.0 38 .................................... GCCACACCTAATCCCTGCCTATCCTCTGCACGCGATCG 2522592 36 100.0 38 .................................... ACAAAACGCGGGCCTGCAGAACTGATCATCACGGAGCT 2522666 36 100.0 35 .................................... AACCCCAACATGACCGCGTCGATCAACGGCCACGA 2522737 36 100.0 35 .................................... TTTTGGGGACGACCCAACGAGCAAGGCGCGAACCG 2522808 36 100.0 37 .................................... TGTTGCGCGGCGGCTTGGGGGTCGATTTCCGGGTATG 2522881 36 97.2 37 ..................G................. TTCGCAAAACGCCTGGAAGACACGCGGCGCACGTTCC 2522954 36 100.0 36 .................................... GACACCGCCTCCGATCCCCCGCCGAACGCCGGCAGA 2523026 36 94.4 35 ..........A.....................T... TGGTCGACCTCGATCGCGCCGGGCGAAAGCAAGGT 2523097 36 100.0 35 .................................... ACCTGCTCGAAGAACATGTGCCCATACGCCAGCGC 2523168 36 97.2 34 ............................G....... TTCTTCGCTGTCTCCGGCACGATCTTGACGTACT 2523238 36 97.2 35 .................................A.. CCACACACCAAGTGCCTCTTCTTCCTTGGCCCGAC GGACA [2523254] 2523314 36 83.3 0 .........TG..T.A..................AT | ========== ====== ====== ====== ==================================== ======================================= ================== 30 36 99.0 36 GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG # Left flank : TTCGATGAGTCGGGACGATACACGTCGAACGCTTATCTGTTACGACATCATCAATGATCGTCGACGCACACGCGTCGCTGATGCACTGTCAGAATTCGGAGACCGGGTGCAGTACAGCGTCTTTGTTGTGGATATCTCACCCGCCAGACTTCTACAAGTGAAGTCCCGCCTGAGCACGATTATCGAGCCAGGCGAAGATTCCATACTTTTCTGCGACCTAGGCCGAGTAGCAGAACTGAGCGAAACAAAGTTTGGGTATCTTGGAAAGTCGCGGGAGGTCACAGACAATGACGCACTGATTCTCTAGCAGAATTGGTGGTAAAGCTACGAGCGCGCCGGTGTCACGCAAACCCTTGGCTTGCGCTCGCGCAGTGAATCGCCTGCTCAACATTGAGAACTCAACAGTGGATGACTTTTGAAGCGCAACGTCTTGTAGAATCGTCTTCGCACTCGCAAACCGCTGGATTTCCCCTGTTCACTGGTGCTGTTTTTCAGCCCCA # Right flank : TCCTTGGCATGAGTCATCCTGGTGGTAGCAATTCACGGGGCGCTGTTTCTTAAAGGACAGCGGGGCGTCGATAAGCAATGGCCCCTGCGGTAGCGTGGGCTGCATGACTGATGCACTCGCGCCCAAGCCTGAAGACCTCTCGATAGACGCGCCGCCGGAGCTGCGCGCGCAGCTGACGCACCGCACGATCCGCGAGTTCACCGATCAGCCGGTGACCGACGAGACGATGGAGACGCTGTACCGCGTGGCGATGCGGACCGCGAGCTCGCGGGGGATGCAGCACGCGAGCCTTATTCGGGTGACGGATCCGAAGCTGCGGGAGCGGCTTGCCGAGATTGGTGCGCAGGAGTACGTGGGGCGGGCACCGGTGTACTTGGTGTTTATTGTGGACTCGGCAAGGAACGCCGCCATCCTGCGGGAACAGGGCTATGACCCGGCGGCTGCGGGCAAGACGAAGGTGTTCGTCGAAGGCTTTACCGACGCCTGCCTCATGGCCCAGA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //