Array 1 4300-5425 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXRN01000046.1 Salmonella enterica strain BCW_3975 NODE_46_length_36837_cov_2.49007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4300 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 4361 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 4422 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 4483 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 4544 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 4605 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 4666 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 4727 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 4788 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 4849 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 4910 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 4971 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 5032 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 5093 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 5154 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 5215 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 5276 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 5337 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 5398 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 21684-23790 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXRN01000046.1 Salmonella enterica strain BCW_3975 NODE_46_length_36837_cov_2.49007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 21684 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 21745 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 21806 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 21867 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 21929 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 21990 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 22051 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 22112 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 22173 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 22234 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 22295 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 22356 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 22417 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 22478 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 22539 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 22600 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 22662 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 22723 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 22785 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 22846 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 22907 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 22968 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 23029 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 23090 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 23151 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 23212 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 23273 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 23334 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 23395 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 23456 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 23517 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 23578 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 23639 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 23700 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 23761 29 89.7 0 A...........TC............... | A [23787] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //