Array 1 3052880-3051216 **** Predicted by CRISPRDetect 2.4 *** >NC_011083.1 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3052879 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 3052818 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 3052757 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 3052696 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 3052629 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 3052568 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 3052507 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 3052446 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 3052385 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 3052324 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3052263 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3052202 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3052141 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3052080 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3052019 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 3051958 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3051897 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3051836 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3051775 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3051672 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3051611 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3051550 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3051489 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3051428 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3051367 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3051306 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3051245 29 96.6 0 A............................ | A [3051218] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3070264-3069138 **** Predicted by CRISPRDetect 2.4 *** >NC_011083.1 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3070263 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 3070202 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 3070141 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 3070080 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3070019 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3069958 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3069897 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 3069836 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 3069775 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3069714 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3069653 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3069592 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3069531 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3069470 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3069409 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3069348 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3069287 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3069226 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3069165 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //