Array 1 10984-10282 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHJH01000047.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N47713 N47713_contig_47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10983 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 10921 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 10860 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 10799 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 10738 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 10677 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 10616 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 10555 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 10494 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 10433 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 10372 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 10311 29 96.6 0 ............T................ | A [10284] ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 28491-27243 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHJH01000047.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N47713 N47713_contig_47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28490 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 28429 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 28368 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 28307 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 28246 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 28185 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 28124 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 28063 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 28002 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 27941 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 27880 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 27819 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 27758 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 27697 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 27636 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 27575 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 27514 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 27453 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 27392 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 27331 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 27270 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //