Array 1 59765-60248 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADQVI010000005.1 Corynebacterium diphtheriae bv. gravis strain 01-14 NODE_5_length_129872_cov_41.742040, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 59765 36 100.0 28 .................................... TCATCCATGTGCGGGTGCAGTCCGTGCC 59829 36 100.0 28 .................................... CACCGCTATGCCAGCGTAGCCTACGAGG 59893 36 100.0 28 .................................... TGTGGACACCATGGGTGAAATCGGGGTT 59957 36 100.0 28 .................................... CCGCGGCACCTATGACCGCAAGCGCGGC 60021 36 100.0 28 .................................... GACACCCCAAGCGAACGATGGTCTAACA 60085 36 100.0 28 .................................... TGTAGAGTTCAGATAGTACGCACAAGGT 60149 36 100.0 28 .................................... CATCGACCAGCGAGGAAGCCACCCAACA 60213 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 8 36 100.0 28 GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Left flank : ACACCATTACTTCATCAAGTACTGCGTCAGTGACCGCGGAAATCGTCTCATGGGAGATGTCCACCCGCATAACAGTGGCCATATGGTGCCTGATATCGCGCACGGTCATCCCACTGGCATACAAGCTCACGATCATGTCATCGACATCCGTTAAACGCCTCGAGCCTTTCGGGACCATGGTGGGAATATACGTCCCAGCTCTATCCTTGGGGACGTCTACGGTAACTGGCCCGTCGTTGGGATCAACAGTCTTTAGGTAGGTGCCGTTGCGATAATTGTAGATCCCAGCAGCAGCTTTAGCTTCGCGATTTCAGCATGAGCAAGCAGCTTTTCCTCAGGTCGCGTCAATCTTGGCCTTATCAGCCGAGTCTCGTCTTACCACAGTAGTCATTCTGACTTATCTCCTTATGCGGAATAGAATCCCAAACACAAACCATCAGGCACCCTCATTCCCAAAAACCCTGATAAACTTCTCCTACGGTTCATCCCCGCTGGTGCGG # Right flank : CAGGTAGCCCAAAAAATCCTGTTTAACATGGTTTTTTGGGCTACCTGAAGTCTAAAAAATCGCGAGTTGATCAGGCTTTTCTTCGCCAGAAACCTCTGCAGAAGAAGAAAAACGGATCATCTTCGACCATTGGATGTCCGATACCGAAAGGATTCGAACATCCCCACCTGGGGGTAATTTTTCTTTAATTAATTTCACCAAATTAGATAACTTTGCGGCCAGAGGCAGGTACTGCACATATACACTCAGCTGTGCCATACAGAATCCAAGATCTAAAAGATTCTGACGAAACGCCGTTGCTTGCTTTCGCTGAGTCTTTGTCTTCACCGGAAGATCAAACATCACCACACACCACACCGGATCGCTACCTTTCTTCGGCATCGAAGGGACCTTCCCAAATAGGCGGTACTAATTTCTCAACATCACCTTCCACATACCGCCCATACTGTTGAGCGAACGCGGTAAAAACCGTCGGAATTGACTGCCCCGCAGAATTGAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: F [matched GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 14128-12816 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADQVI010000006.1 Corynebacterium diphtheriae bv. gravis strain 01-14 NODE_6_length_114139_cov_40.925762, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 14127 29 100.0 32 ............................. ATTTCCCATGCCGGTTCTTCGCCGGCGTCGTA 14066 29 100.0 32 ............................. TCCACCGAGTGCTTTTCATGCTGGTCAAACCA 14005 29 96.6 32 ............................G CTACTTCCCGCAGCTTAGAGACTCTATTTGGC 13944 29 100.0 32 ............................. TGTCGATAAACGCCGCTAAAAGGCAGACCACA 13883 29 100.0 32 ............................. GTGTGGATGGTTCCGCACGTGTCAAGTCCGCG 13822 29 100.0 32 ............................. TGTCCCGTTGAAGTTGGTGAGTTGCCTGCGGA 13761 29 100.0 33 ............................. TGCACCAGGCTCTCATATCGGAGGCAGAAGCAA 13699 29 100.0 32 ............................. GCCACACCATGCTGTTCCTTGAGCACTTAGCA 13638 29 100.0 33 ............................. TAGGTTGTCGGTGTCGCGGCGTCGGTTATCGCG 13576 29 100.0 32 ............................. CCCTGCCAGAGATCCAACCATATTCTCCGCTA 13515 29 100.0 32 ............................. TTCCAGTTGGCGTTCCGTAGGGTTGGCGCATG 13454 29 100.0 32 ............................. AAAGGGCGCTATCACACCTTCTATGGTGACGC 13393 29 96.6 32 ............................G TAAAAGAAGCGCTTGACATCTGGTCGGCGCAA 13332 29 100.0 32 ............................. GAGGACTATAACCTCCAACTACTTTGCCGAAC 13271 29 100.0 32 ............................. ATGTCTTCACACGCTATTCGCAGTGGGTGGGG 13210 29 96.6 32 ............................G CACGTAGGCTTGTCGGGCCGCATATGAATGGT 13149 29 100.0 32 ............................. GTCTTCGAGGATTCGACGGGTTTCCATTGTGC 13088 29 100.0 32 ............................. TTAAAGCACCATCCACGGGTGTTATTTGCTGA 13027 29 100.0 32 ............................. AGCTCAGATTGCGGGGATTCTCCCCACATTTT 12966 29 96.6 32 ............................T AAAGCGAGGTCGCTGCGCGTGACGCTGCCGAA 12905 29 100.0 32 ............................. GCGAGCGACCGGCATGCCATCAGACCCGACCC 12844 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.4 32 GTCTTCTCCGCACACGCGGAGGTATTTCC # Left flank : GTCGGCATCTCCGCCGTGAGATCCATTCAAGAAAAATAATGGCAGGTATGCTCGAAGCACTAATGGAGGTGCTGACACCGTATCTTCCAAATCGTAATGACGATCGGCTAATCGGCGACAGTGACGAAGTCAAAGGGCACATACAGTATGGCAAGGAGATTAACTAGATGTTCGCTGTACTTTACCTTCAGGCAGCACCTGATCATCTCCTTGGTTACGTCACCCGTTTCCTTACTGAAGCGGATACAAGCATCTATGTTGGAAATGTTTCCAAAAACGTAGCTTCAAACTTATGGATTCGTGTAACAGAAGCTATTAAAGATGCTCATGCCACAATGATTGTGAGCGATAATTCTCGTGAGCAAGGTTTCTCAATAATGACGACAGGTGATAGCACACTACAAGTTCTTGATGCAGATGGGTTATCCGTCCTGGCTTCACGCCCTGGACGAGCCGCTGTAAAATTACATGGCCTACAGTAAAACTGCAGTACAGTTAGT # Right flank : GGCAGGCAATCCAAATATTCGTGTGATGCGTGTGTCTGATGGCTCGCTCATGGACTCCGAGTCTCAGAAGATTCTCTCCGATATTGCGACAGAAACAGGATTCCAGGTGTGGGTTGAGCTGGTTGATGAAACCGGTGAACATGGCATTGTGATTGAAGATGGGCAAGTGCGGGAACTTATAGAAGAAGCAGTGTAAGTGCTGCGTGGTGGGGCGCGCATACCTTCAACGCGCACTAGATCAAAGGACAAAGAAAATGGCACAAGGCGAAGTCAACGTCACCATTGTTGGTAATCTCGTTGCAGACCCAGAACTTCGCTTCACCCCTAATGGTGTAGCAGTAACCAGCTTCCGTGTTGCTTCTACCTCCAAGAAGTACGACTCCCGGTCGAACCAGTGGGTAGATGGTGACGCGGTTTTCTTGCAGTGCAACATTTGGCACCAAGCTGCCGAAAACGTTGCAGAATCCCTCACCAAGGGCATGCGCGTGATCGTCACCGGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCTCCGCACACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //