Array 1 105148-108835 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQMQ01000005.1 Corynebacterium sp. 12B NODE_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 105148 29 100.0 32 ............................. CTCACCGGCGAAGCATGGGTGAGTGGCAATGC 105209 29 100.0 32 ............................. GCCGTAGTGAGCGGGCGGTCGAAGGTCGGCGG 105270 29 96.6 32 ............................G CACGGCCCAAAACAATACTGGTAGTGAGCGAT 105331 29 100.0 32 ............................. GCAGATATCAACTCTCGGTCTATCGGTATTGA 105392 29 96.6 32 ............................G GTCAAGGACCTCGGCTCTCAGGGCAAAATCAC 105453 29 100.0 32 ............................. TCTGCAACGTGTAGGAACATCTGTCTAGCGCG 105514 29 100.0 32 ............................. GCTTATTCGAGCGCTTGGGCTGTTCGGTGGCG 105575 29 96.6 32 ............................T ATGACTCCGCTACTGTCAGCGACCGGGCTAGC 105636 29 96.6 32 ............................T CAGCCCCAGCATCGCGGTGCGCTGAGACCGCA 105697 29 100.0 32 ............................. TCGGCCACGCGACACGCGGACACACCCTCTGC 105758 29 96.6 32 ............................G AGGGAGAAAGAAAAGCCCCTCACACACAGAAA 105819 29 96.6 32 ............................T CTCAATGTCGCCAAGGCCACGAATATTCTCGG 105880 29 96.6 32 ............................G ATCGTCCCGGCCGATATCTAGGTATCCGTCTG 105941 29 100.0 32 ............................. ATCGACAATGAGCGCGCCGACTTTATCCTCGA 106002 29 100.0 32 ............................. ACCGCGTCCCCACTCGGGGTAAACCGCAACTC 106063 29 96.6 32 ............................G GAGAATCGATGAGAAGCTGGACCAAGCTCGAG 106124 29 96.6 32 ............................G CTAACAACGTTGAGCTGCCAGTTGACTATGAG 106185 29 96.6 32 ............................G ATCGACCAGCACAAGGCCACATTCGAACTCAT 106246 29 96.6 32 ............................G GAGCTGGAGCACATTTTGTGCTGGCCTAATCC 106307 29 100.0 32 ............................. GCAGACATTAATGCCCGGTCTATCGGTATTGA 106368 29 96.6 32 ............................G AGAGAGAAAGAAACTCTCACCACACACAGAAA 106429 29 100.0 32 ............................. ACGCCGATGTTTTCGGGCCCGATGGCTTCCTG 106490 29 96.6 32 ............................T ATTTCCGGCCCGCCGCGATGGCAGATTAGCGA 106551 29 96.6 32 ............................T GTGGTGTCGATCCTAGGGGCTTGGCGCTGTAT 106612 29 96.6 31 ............................G ACCGCGACGACATCTCGGACGATGACAAGGA 106672 29 96.6 32 ............................T TCCGCCGAGGGCATGAGCGTGCTCACGGGGTT 106733 29 100.0 32 ............................. GAGAAATCCGGCAGAATGATCGACGCGGGCCC 106794 29 96.6 32 ............................G GGCGGTGGCGATACCCTCACCGCGGTGCTCTT 106855 29 96.6 32 ............................T TCGCGCAGGCGCTGCTGGCTGTGGTGTCAGTT 106916 29 96.6 32 ............................G GGAACCTCGAAGGGTGGGACGGTCATTTCATT 106977 29 96.6 32 ............................T TCGGCCCGCTCCTGGCTGTCGCTGCGCAGGAA 107038 29 100.0 32 ............................. ATCGCCTTCATGTTCGTGACGTTGCTGGTGTC 107099 29 96.6 32 ............................G GATGCTTTCATGGCACTCACCGAGACTGAGCA 107160 29 96.6 32 ............................T CGATGCACCAAGGGCTAGCTGACGGCTCCCTA 107221 29 100.0 32 ............................. AGCGCGGCCCGTATCGCCTCGATCTCAGAGAC 107282 29 96.6 32 ............................G GGGCGCGTGTCCAGCTTCAGCTTGGCACGAAC 107343 29 100.0 32 ............................. ATGCTGTTCATGTTCGTGACGTTGCTTGTGTC 107404 29 96.6 32 ............................T ACGAGATCGAGGACACCCAGCTACGCGGTGAT 107465 29 100.0 32 ............................. ACAATAAGGCGCGCCTTCCGAAGTCCAGCTTC 107526 29 96.6 32 ............................T CCCCAGTTCGGAGGGGGAGTACACAGTGATCC 107587 29 100.0 32 ............................. TGCTGGGCTTGCTGCGCGTGCGGCTGCAACCA 107648 29 100.0 32 ............................. CCGCCACAGATGGACTGGGATTACATCTACTC 107709 29 96.6 32 ............................G AATTCGACATCGACGCCATCGCGGACGAGGTG 107770 29 100.0 32 ............................. CCGTCCCGACAGCCGATCACCACTACTGCCGA 107831 29 96.6 32 ............................G TCGCCGCTGGGTAGCGTGTTTATGGATAGCAC 107892 29 96.6 32 ............................T CATCGACGCCGGCTACCGCGGAGAAATCGGGG 107953 29 100.0 32 ............................. CGGCGCCCGGCCGCCCCCACGGCGCGTGGATA 108014 29 96.6 32 ............................G TAAGCCCCGCCGTGTGCGGGGTTTCTCTGTTG 108075 29 100.0 32 ............................. GCCTTTTGGGCCAATGTCAAGAACATTGGTGA 108136 29 100.0 32 ............................. AAAAAACTGTCGCGCGTTGAGGACCGCGCCGC 108197 29 100.0 32 ............................. ATGGGCGCGGCGGCCGGCCGTTTGGGCGCGAC 108258 29 96.6 32 ............................T CAGTGCGCGGCGCAGCGGCTCGGTAATTCTAT 108319 29 96.6 32 ............................T TCCCACTCGGGCAGCGCCGGGTCGGGGTTGAT 108380 29 100.0 32 ............................. TGGTGCCCTTCACCGAGGCAAGAGCATTATCC 108441 29 96.6 32 ............................T TGCTAGATCCGAAACGGTCGATCCGCACCGAG 108502 29 100.0 32 ............................. TGTGATTATCCGCACCGGCAGCAGGCCGGAGC 108563 29 100.0 32 ............................. TTTTTAAGCAGGTGATTCTCGGCATCTACCAG 108624 29 100.0 32 ............................. CAAAAGTCCTCTTCGCTGAGCTCGGGGTCAAG 108685 29 96.6 32 ............................G AGGACTCGGCAGTAGTCGACTACATTTTCCGC 108746 29 96.6 32 ............................G TCGGCTCCCTCGGTGAGCACCTGCACGGTGGC 108807 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 61 29 98.1 32 GTTTTCCCCGCACACGCGGGGATGAGCCC # Left flank : TGTCCTGACTGCGGATGCGGAGCTATTGCTATGGAGTGAATTGGAGCTTGTGTCCTCGGGTGTCTCCTGGGCTGAACCGGCGAGTTCATCATGATCGTTCTCGTAGTAACAGCGTGCCCTGCAGGCTTACGGGGGGATCTGACTAAGTGGCTCATGGAGATTGCGCCGGGCACGTTTGTGGGAACTCCTTCAGCCCGGATCCGTGACCTGCTGTGGGATAGGACCGTAGGCCTCTGCAAAGATGGGCAAGCCCTTCTCGTGTATTCCGCCGACTGCGAGCAGGGCTTCGAATTCAGGACGCATCGCCACAAGTGGATGCCTCGTGACTTCGAAGGCCTGACCTTGATGGTTCGCCCTGGAGCGTCGGACACGCCACGGCGACGTACTGGCTGGAGCAATGCCCGACGCCAACGCCGCACCTACAGATCGAGGTGAGAACTTCCCGCTACAAGTTGTAGCTATTCTGAGCTAGGCGCTAATATTTCACCAGCTCAGTAAGT # Right flank : CACCATCTCGTGCGGCCTAGCTCCGCTTCCCAGTTATTTCTAAGGACTGCCACCCGTCGCGTATGCCGAGATAAAAGTGTGCGCTACGGGCTGCGAGGTGTGCGTGGTGTCTATTGCGCGTTGCTGCGCGGTGTGGGGGTGGCCCTCAGCCTGCACTGCAGTGTCGCTGTTGGTTGAACTGGTTCCTGTGGCACAGCCACCATTCAGTCAGGGGGGCCCTGGCTCTGGTATTTGATTACTGCGGGTGAACATCGTGTGGTGTGTGAATACAGGCCAGGATGAGAGCACTCAAGCCAAGATTCCTAGACGCCCCACGATCACCTTCTATGCCCTCGGTGGTACTCATCGTGCCGTAGCCGCGGATAGGGCAATGTGGGCGTCGATCATTGGCTTGTCCTAGTGTGCAGTACGTAGTGATGTTGCTCTCTAGCCACGGCGGGTGGCTCACCGAGAGGGTGAGTCAGCTGTAGGGATTAGTGATACTCATCGTGTGTATCGAT # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 139339-140590 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQMQ01000006.1 Corynebacterium sp. 12B NODE_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 139339 36 100.0 28 .................................... TGACTCGATCGCGCCGACGCGGACGAGA 139403 36 100.0 28 .................................... GCCCGTAGAAGAATCCACTGATCCCGGC 139467 36 100.0 28 .................................... TCGCTGAAGGTGGATAATTTCTTCACCC 139531 36 100.0 28 .................................... CTCGTCATGGGCTGGGACACACACGGCT 139595 36 100.0 28 .................................... GGCCTGATTTGCACCACCATCGCTCGCG 139659 36 100.0 28 .................................... GGCCTCGACTACTGCCCAGAAGTCCACA 139723 36 100.0 28 .................................... TCGTGTCCACGACCGTCGCCAGCAAGGT 139787 36 100.0 28 .................................... GCGTACAGCGCAGATTCGCGGCGCGTAG 139851 36 100.0 28 .................................... AACGCCACGATATTGAGCGGCACGTGCC 139915 36 100.0 28 .................................... AGGTTCGTTTCCTCGGTCGTGAGATGCG 139979 36 100.0 28 .................................... GCTGAGGAGCTGGAGGCGCGCGGCGAAA 140043 36 100.0 28 .................................... GTACCTGATGACACACCTGACTATGTGA 140107 36 100.0 28 .................................... ACATTTTACGGCTGGTGTCTCTCATTGG 140171 36 100.0 28 .................................... CCCTCTTGCGCCACGCCCATGGGACCCT 140235 36 100.0 28 .................................... GTACCTGATGACACACCTGACTATGTGA 140299 36 100.0 28 .................................... ACGGAAGTTCAGCTGCGGCTCATCGACG 140363 36 100.0 28 .................................... TATGCGGGCAGTGTCAGTGATGGTGTCG 140427 36 100.0 28 .................................... CAGCAGAATGCCGTTGCCAGCCAGCCGC 140491 36 100.0 28 .................................... CCATCGTGGGTGGCGATCGTGACCCCGA 140555 36 97.2 0 .................................C.. | ========== ====== ====== ====== ==================================== ============================ ================== 20 36 99.9 28 GAAGTCTATCAGGGGTATATCGAACTGAACCCCAGC # Left flank : CATTCAACAGCGATGGCCAGAGTGTTTCTACGGTCTTTCAAGACTTTGCGCAGCATTTTGGCTTATACGTCGAAGGAACAGTGGATCGGCTACAGGTGCCACGTTGGGAAGGGCAGCTCAGTGCCAGCGAAGGACAGTGAACCGGTGTGGTGCGTCGTAATGTTTGATCTTCCGGTCAAGACCAAAAACCAACGTAGGGAAGCTAATCGGTTCCGTAACCGGTTGTTCGACCTTGGTTTCTGCCGCGCCCAGTTCAGTGTCTACGTTCAGTATTTCCCACTGGCGGCGCGTCTCAGCACGATAGTAAAACAGGTGAAATGCGAACTTCCCGCAGGCGGTGAAGTGCGTATCTTGTCCGTGACAGACCAGCAGTGGGCAAAGGCGATCCGTTTTTCGAGCCACAAGGAACAAGCGGTCGAGAAAATCCCCTCTCAACTCACGATTTTTTAAAAACGCATGCTGAAAAAGACCCAGTTCAGGCCCTGTTTCTGGGCCTGACT # Right flank : CGATAGTGGGCACAGTGGCTATCTCGGTGCAAGCCTTTGGCGGTACATCACGCTTAACGGCAGTACCGCTTTCCACGTGCTGCGCTGCGATGATCCTACAACCACACACTTGTGAATTTCTGTAGGATCACCGCCCCGCGACCTACCGCGTCGCCTCCTCCAACAGGTACAGCACGTGCTCATAGCTCCGCCCGGTGATTTGCTCCATGCCCAGCTCGCAGGTGCGGTTGGAGGACACATAGGCGTCCACGCGCCCGTTGGCTTCGGCCTCGGCCAGCCCGACGCGCTCATCGCGGGTGGCGGCGTCGAGAAGTTCGGGGTGGAGCATGCCGCGGTCTCCGGCGGTGCCACAGCAGCCGGCGCCGCGGGGCACGAAGGCCTCCTCGGCGGCGAAACTGGCGACGCGCACGAGGGTGTCGCTGAGTTCCATGTGGGCCAGCGAGCAGTTCGGGTGCACGGCCACCCGCCCGAGGCGGCGGGTGGGTTCAAGGTGCTCAATG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGTCTATCAGGGGTATATCGAACTGAACCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 377350-375491 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQMQ01000002.1 Corynebacterium sp. 12B NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 377349 28 100.0 33 ............................ TGCCGTGGCGTACACGGCTGGCAACAGGTCACA 377288 28 100.0 33 ............................ TGCGTAGCGACACCACGATCTGCTCAGCGTCGG 377227 28 100.0 33 ............................ GTCGCCGCTGGGTAGCGTGTTTATGGATAGCAC 377166 28 100.0 33 ............................ CGGAGCGCGCCGCAGCGGGAATGTTGTCAGCGG 377105 28 100.0 33 ............................ GAGAGAGAAACACACACAGAAAGAGAGAAAAAA 377044 28 100.0 33 ............................ GGATGATACCGAGTATGACACTGAGTGGATGGG 376983 28 100.0 33 ............................ ATCACCACCGGCCCCGAGGATGGCTGGAAACAA 376922 28 100.0 33 ............................ CTCCCGGTCCTTCTCCATGAAATCGCCGTAAGC 376861 28 100.0 33 ............................ GGAGACAGCTATGACCCCTGCTGAGCTTGCGCG 376800 28 100.0 33 ............................ CCTGCGTGGCGCGGACCTGCGTGGCGCGGCTAC 376739 28 100.0 33 ............................ CGCCTCGAATAGTATCTCGCCGGCCCCGTGTCG 376678 28 100.0 33 ............................ CCACGGATCAGGCAGTGGGCAGTGACTCCGCCT 376617 28 100.0 33 ............................ CTGCCTAAGGCGGTGGGGGATAAACTGACTGGC 376556 28 100.0 33 ............................ TGTGGAGTCGGGCGGCTACCCGTCGCGGGTCAA 376495 28 100.0 33 ............................ ATGCCCTGGTCTGGAGCCGCTCCGCTCTGGGAG 376434 28 100.0 33 ............................ GGTATCTAGGAAAATGTCGCGGATAATCTCCAC 376373 28 100.0 33 ............................ GACCTGCTTATCCGGCGTGGCTACACCGCCTTG 376312 28 100.0 33 ............................ GTGAGGAACTGGAGACCAACGCGGCTGATCTAC 376251 28 100.0 33 ............................ GGGATTTTGGGGCATGATCACCGACTTTTTCGC 376190 28 100.0 33 ............................ GAACACCAATATCCGGCGATCCCGCATCGATCC 376129 28 100.0 33 ............................ GAACATTCACGTGACTTTTGATCGCTCGCTGGA 376068 28 100.0 33 ............................ GGAGCTCGCGAAGAAGAATCAGGCCGACGGCGA 376007 28 100.0 33 ............................ CGTGGCAGTAACATACGAATCTTGGTTTTCGTC 375946 28 100.0 32 ............................ CTCCAGAAAGGGAGAAGAAAATGACCACCTAC 375886 28 100.0 33 ............................ GCTTCACGCATGAGCAGCGCGTTCGCCTCCGAA 375825 28 100.0 33 ............................ CTGACCTCTTTACCTCGCTGGCTGATCTAGACC 375764 28 96.4 33 ....................C....... CATTTATCAGTATGTGGCCGACTACATGGGCAA 375703 28 100.0 33 ............................ GCTCACACCCGACCACACCTCTGGCTCCCACCA 375642 28 100.0 35 ............................ CACTCTTATGCTGTGGGCTTTTCCCGAGCCGGCGT 375579 28 100.0 33 ............................ GCCCGGATTGCCTGGGATGCCGGTTTCTTCGCC 375518 28 92.9 0 ..........................TG | ========== ====== ====== ====== ============================ =================================== ================== 31 28 99.7 33 GTTTTTCCCGCACGCGCGGGAGTGGACC # Left flank : TTTTAGATGGCGGTAAGACAGAGCTATCTGGAGGGTGGCTTGCCGCCAATGGCATCGTATTCAAACGTATCCAGGACGCCCCGCCTGTCAGCGTTGAGATGATGCTTCACGCTAGTAAAGGATGGCAGACCTCCCCAGAGCTTGGAGCATCTGACCATCTTCTTGACCGGCTCTCGGATACAGCGCCCGACACGGTAAGAGTAGAAGAATACTTACCTATTACCGTGGGCATAGCCGTGTCAGGGCGCCCATTGGCCCAACACGGAGTTGCTCATCTCAAAGGCCGAAAGAGGTTTCTTCCGCGCCCGACATATCCAGTAAGTTTATGGACTCTAGAGGTTCTATCGAGGAGACACCGTGGTTCTGGTCTGATGGCGGAGGAGGTGACGCGCGGGAAATTTAAGACTGTTGCTCCACCGGTCGTAGTTTAGTTCTGTAAAGGCAAATAGAAGTTGAATCTATACGCCTTGTTTGCTCGTTAAACCTGCTGTTCGCAGAGT # Right flank : CAAGCTCCTGTGTTTGCCTAGCGAGCCAGTCGAGTTTGCCAAGGTCACCAAAAAGTGACTTATTGTGGAGCGTAAGGGGCATCGCAACGCAAGGTGTCCAGCTGTCACCTTGTTGAAAGCATGCATGAAGCATCGTTTCCTGAAGCGGTTGTGCCTTGGCAGCGGTACTGGTTTGTCCGCTGTAGCTTGTACGCCTGTGACAGGAATCGGTTGCTGGGCACTGAAGACTCTTTCTTACTGTGGTCGGGCTGCATATGGGCGGCCACCAATTACCGATCTAGATCTGAATACCACTTATCTAGCGATGTACCGATCCAGTTGAGTAGTTTTTCCAGAGCGTTTTAGGTGGAAATTTCACCGCTCCCGCGTTAACTACTCCGTGGTCGTAGCGATACTTCGTTTGCGCTTCTGTCTTGAGTACGGCGGGTGCCGTTTTCAGAAGTGTTCGAATGGACGGTAGAAAACATAGATGCGGCCCTATCCGACGAGGGAAACCTCGA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCACGCGCGGGAGTGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-10.90,-11.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //