Array 1 54054-54221 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARTR010000010.1 Listeria seeligeri strain FSL L7-1175 NODE_10_length_54261_cov_35.142496, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 54054 36 100.0 30 .................................... TGGTAGCTTTGCAGAAAATATTTAACCACA 54120 36 100.0 30 .................................... TCATATAACCCTCCTCGCAACCCTTACTCA 54186 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGATAAGCTGACTGCAACAATTAGCGAGTTGATAGGTTACGAGCTATTGGAGCACGAGCTGGATTTAGAAGAAGACGAAATTACAGTCATTGAATTATTCAAAGCTTTAGGGATAAAAATAGAAACAAAAAGCGACACCATCTTTGAAAAAATAATTGAAATTGTACAAGTTTATAAATATTTATCAAAAAAGAAGCTGTTAGTTTTTATTAATGTATATGCTTATCTTACAAAGGAAGAATTGTTAGAACTAAAGCGGTATATTTCTTTAAATCAAGTGAAAGTTTTATTTATTGAACCTAGAAAAATAAAGGAAGTTTCACAAATAGTTTTAGATTTAGATTATTTTTTACATGTGGAAAATGAAGTTTAAGAATCGAATGCTCTTTGAAAATAAAATATATTTTAGTTAAACCATTAAAACTGCATTCAAAATTGAAATCTTGCTATGGATGAGTAGTGCGATTACGAAATCTTAGAGGATAAAAAAATCCTACGAG # Right flank : TTTTGATACAGAAGATGAGGCTATCGAGCAGTTTTAGAGC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 856299-861874 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARTR010000001.1 Listeria seeligeri strain FSL L7-1175 NODE_1_length_1092769_cov_29.379611, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 856299 36 97.2 30 ..C................................. CGGCCATACCAATTGCAGATGCACATATAT 856365 36 100.0 30 .................................... AGAGCTTTTCCAAATTGGCTTTTCTTTTAA 856431 36 100.0 30 .................................... TCGGATAGAAATCACTTGCTTAAACTTCGA 856497 36 100.0 30 .................................... TAGTATCACTACATCATGTTGCATGTTCAG 856563 36 100.0 30 .................................... AATGCGTTAGCATAAACGGAAATGCCTAAA 856629 36 100.0 30 .................................... CTTCCTTCTGCGTTAGCGTCCCCTTTTACT 856695 36 100.0 30 .................................... TAGTATCACTACATCATGTTGCATGTTCAG 856761 36 100.0 30 .................................... ATGACGAGCTAAAGGAAGTTTTTGACCCGA 856827 36 100.0 30 .................................... ACTCTCCTTCCGTATCGTGAATTGCCTGGT 856893 36 100.0 30 .................................... TGTTTAAGGTATTCTTGTAGTTCTGCTAGT 856959 36 100.0 32 .................................... CCGTGCCTATCATGGCCGTGGGAGCGGCGGCA 857027 36 100.0 30 .................................... GTTACGCGCTCTCTTATTCGCCCGTCAGTT 857093 36 100.0 30 .................................... AAAGCGAAAGCTGAACGTGCTGACGCTGTT 857159 36 100.0 30 .................................... AAAGCGAAAGCTGAACGTGCTGACGCTGTT 857225 36 100.0 30 .................................... CGAAAGCGACCGATGGTTACGACATTAATT 857291 36 100.0 30 .................................... CTTCATTTGCAAATGAATCCTTCTTCTGGC 857357 36 100.0 30 .................................... GATGCGGAATGGCAAGTTTGTAACAGTAAA 857423 36 100.0 30 .................................... CTGATATTGACGTGGTAGAAGATACGTTTA 857489 36 100.0 30 .................................... TTTCTTCTCGTTTGTCTTGCTATTCATAAG 857555 36 100.0 30 .................................... GTATGCGAATGAGACAGATACAAGGAGGAA 857621 36 100.0 30 .................................... AGTATCTACAGTGGCTATTGCGTAATCTAC 857687 36 100.0 29 .................................... AGACTGCCACAAAAGGAATCGGCGCTTTT 857752 36 100.0 30 .................................... AAGGACTATGATTCAAGAACTGAATAAGTC 857818 36 100.0 30 .................................... CTTCATTGTCATCTGCTGTATAACTTAATG 857884 36 100.0 30 .................................... ACGCAACGAATCAGAAAAAAACACCGCTAT 857950 36 100.0 30 .................................... AAGCCACGTGTAAATAAGAAACTTCCCAGC 858016 36 100.0 30 .................................... ACTAGCTTTGAAATCACGAATCGAGGGATT 858082 36 100.0 30 .................................... ACCTTACTACCAGAAGAGCAAGTAATGAAT 858148 36 100.0 30 .................................... AAAGATATTATGTTTCAAGATGATTTTGAT 858214 36 100.0 30 .................................... AGACCGTAGCGGGCATTATTCAGGGGTTTA 858280 36 100.0 30 .................................... GGCTAGAATCATATTGTGATGGCTATGTTA 858346 36 100.0 30 .................................... TATAGAAAGCAACTCTTCCATAAGATTATG 858412 36 100.0 30 .................................... GTTATGGAGGGAGATTAAAAGATGTATTAT 858478 36 100.0 29 .................................... GAGGAGCAAACTGGAATGAAGGTAGTCGC 858543 36 100.0 30 .................................... TCCGCATCAAACAATACGAATGGCAGACAA 858609 36 100.0 30 .................................... TTTGTAGAGGTCCATGCGGTTGATTTTTGC 858675 36 100.0 30 .................................... CGGGTTAGATATACTTGTTTTCCCGGTTGT 858741 36 100.0 30 .................................... CAGACAGACTAACAAACTCAACATTGTTTT 858807 36 100.0 30 .................................... ATCTTGATTGCGTGAATGAATACGAGGACG 858873 36 100.0 30 .................................... GCCTGTTCCGGGCGTTGTATAGTTCCTAAA 858939 36 100.0 30 .................................... GATAGAGTTCTCCGATGGAGGATTGCACGG 859005 36 100.0 29 .................................... GTACTTGCTAATATCATTTTTTTAATGAT 859070 36 100.0 30 .................................... GAACGATTGATAATTATCTTAAAAAATATG 859136 36 100.0 29 .................................... TACTTTTTACAAAGTTTTGCGCGCGCTGT 859201 36 100.0 30 .................................... AATTCCCAACACTCATATCCAAATTTATTT 859267 36 100.0 30 .................................... TAAATTCAAAATTAATATTTTGGACTTTGT 859333 36 100.0 30 .................................... GTTAGGGTGTAACTAATGTATCAATAACCG 859399 36 100.0 30 .................................... TAATGTTTTCACCTTCCAATAATGTGGGAA 859465 36 100.0 30 .................................... ACGTTGGGATAATTTTTTGCTGTTACAGTA 859531 36 100.0 30 .................................... GTGGAGTTAGTGCCTGTAGAATACGCTGTT 859597 36 100.0 30 .................................... TGACGTTTGTATACTGCCCAACTGTTTTCG 859663 36 100.0 30 .................................... TTAATCGCATTTATTGTGGCTTCCTCTTGA 859729 36 100.0 30 .................................... ACACCGTCTTCTTTTTTCATAAATCCGCCC 859795 36 100.0 30 .................................... GCTAAAAATTCAATATGAAGGGCATTCTAT 859861 36 100.0 30 .................................... ACTCTTCCCAATCAACTTTTTTCCCTTTTT 859927 36 100.0 30 .................................... GTCTACTTCATCCCCGTTTACTGGTCGAAA 859993 36 100.0 30 .................................... TAAAAGAGCTCACAGAAAAACGTTTAAAAG 860059 36 100.0 30 .................................... AGGAAGGTAGCTGATACTTTGAGGAACACC 860125 36 100.0 29 .................................... AGGGGGGTCAATAATGACCTCTCTTTTTT 860190 36 100.0 30 .................................... CATTAGTATCTTTCAGCCCCCTTACTTTAT 860256 36 100.0 30 .................................... GAGCCACACCAAGTCACACTTGGAGACACA 860322 36 100.0 30 .................................... CGTGCTTGGAGATGAAAAAAGCAGACATTA 860388 36 100.0 29 .................................... ATGCTGACAATGTATCAGCACTGAAATTA 860453 36 100.0 30 .................................... ACGTTTATGGGGAGGACAATCTTGATAAGG 860519 36 100.0 30 .................................... GCACCTCGTGAGAAAGGGGTGTGACCCGTG 860585 36 100.0 30 .................................... CGCTTACCTTCATTTTTGATAGTTCTCATC 860651 36 100.0 31 .................................... TTAACGTCCGCTATGTGGTTTCAGACGGAGA 860718 36 100.0 30 .................................... TTTAGTCCCTGCTGGTACAAGACTTAAGGC 860784 36 100.0 30 .................................... ATACTCAATGTAGCACAACTAATCAAAAAG 860850 36 100.0 30 .................................... CTTGATTTAATGACCACGTTGGTCGCATTC 860916 36 100.0 30 .................................... AGGGATGTTTAACGTATATCACTACGTTGC 860982 36 100.0 30 .................................... AGGCATTTGAGTAAGAAAGCAAGTAAGACG 861048 36 100.0 30 .................................... CTCCTAACATATCCATCGCCCATTTACATT 861114 36 100.0 30 .................................... TGCGTTGATAGTAGTAATATCCTCTTTACA 861180 36 100.0 30 .................................... TAGATGGTAGTCATACTAACTTTTTTTATA 861246 36 100.0 30 .................................... CTGCCCACGACGGATGAGGCGTTTTTCTTC 861312 36 100.0 30 .................................... ATATTGACAAGTGAATATCCAGCTTCATAA 861378 36 100.0 30 .................................... CAAGTAAAGGAGTTCTTTTTATATACTTAA 861444 36 100.0 30 .................................... ATACTCTTATATAGATAGCCGCTTTCATTC 861510 36 100.0 29 .................................... ATACTTGCTCATCCCGCATCTCCTTTTTA 861575 36 100.0 30 .................................... ACGAAGTGATAAAACCTTTTATTGCTGAAA 861641 36 100.0 30 .................................... AGTGCCATTTGCCGTTCTTGTCCATATACG 861707 36 100.0 30 .................................... CGCATCAGGGAGGTAATTTACGTCAATGTA 861773 36 100.0 30 .................................... ACCACTGACCCCTCTGTTTGGCTTCAAGTA 861839 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 85 36 100.0 30 ATTTCCTAATACCAAAACTTGAGAGAGTACCAAAAT # Left flank : GAGGCATGCCCGTGATTGCCAGAAAAAAGTTCGCCACCATAGACGAAACCACCGCCAATACCTGTACTTACGGTAATATATTGGACACTGTCATATCCTCGCCCCGCGCCAATTCTCGCTTCAGCAAGTGAGGCAGCTTTGGCATCATTTATCAAAGAAACAGGCATACCTACACGACTCGCAAGTTCATCTTGAATCGAAAAACCGTACCACCCAGGTAAATTTGGAGCATCTAAAAAAATACCTTTCGTCACATCAAGCGGTCCAGGAGCGCCAATCCCAATCCCAATTGCTAAGTGTTCTGGGTCCACTTTCCCGACCATTTTCACCAACTTTTTTAGTGCTTGAACTGGTCCTAACACAGCTTCCGTTTCGACTTGTTCGCGTGCCACCAACTTTTTCAAATAGAGACCCGGTAATGGTTTCAACTCGTCATCGAAATAAAAATACATTTACATATTTTCATCAGTCACCTAACATCATTTTTGTTAAGTGTTGAA # Right flank : TGTCTTTTCCATTATACCTCAACCTAAATCAACCTATCAAGGTAAACAATAATATTTGCGGGAATTCCTTTGTAGTCAACGATAATTCGCCATTCATTATAAATGAAAATAAAATAAACTAATACAAATACAACTAAGTTATCCACAGCTTCCAACTTTAATTCGACCGTTTTCCCACCATAGTTATCCACAGCTAACATAGACCAATTTATTGCTTTTATCCAATCCGATTCTTCTACGATTAAAGGTATCTTTGCAATAATTTGTTCTTTTTTAACCATAATTTGTAATTCATTAACAATATCACTAAAATAAAAATGGTTAATTGCACCATCCATCCAAATATGCTCAGAAATGATAAATACATTGATTCCTCTTGTTAACATTTTTTCAACATGTAATTGAAATTTCTTTATTCCCGCTTCTGAAATTATAGTTTTTTCTGGCATTTCTATAAAAAATAAAACTTGCTTATTAAATAATTCTTTTGCATACAGATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCTAATACCAAAACTTGAGAGAGTACCAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 2 885629-884952 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARTR010000001.1 Listeria seeligeri strain FSL L7-1175 NODE_1_length_1092769_cov_29.379611, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 885628 29 100.0 36 ............................. TCGGATACCACTCAAAAAGCAAATGCAGTACTGCAG 885563 29 100.0 37 ............................. AAAGTAGTATCTAACTCATTTATCATCCACTCCTTCC 885497 29 100.0 38 ............................. ATATTTTATAACGCAAAAGGAGACGGAAAACGACCTGC 885430 29 100.0 36 ............................. CAATGAAATTAAGTTTGTCTAAGCTGTCATTTTCGT 885365 29 100.0 36 ............................. AAAAAAGACAGGTTCAATGTATACGATGAAGTTAAG 885300 29 100.0 35 ............................. AAACTTGTGCTTAAGGTGCTTTTTAAAGTTTCTTC 885236 29 100.0 35 ............................. GCAAAATTCATACCCTTACTAAGCGTTGTATTAGG 885172 29 100.0 34 ............................. AAACGAGATTCGGAACACTAGTTGTTTCTTTGTC 885109 29 100.0 36 ............................. TTGAAGTAAGCATTGAGAAAACCTAATCCCCCATCG 885044 29 100.0 35 ............................. CTGTTTTTACATACTTGAACAAACAGCTCGAACTC 884980 29 96.6 0 .......C..................... | ========== ====== ====== ====== ============================= ====================================== ================== 11 29 99.7 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTCATTGCCTGCGCAACCCATTCGGTTATGGCCGGAAGCGCAACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCTGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAAATTGGGTCTCTGCTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTGAGTTATGAAATTAAAGTTTGGTGCTTTGATTTTAAGAGGTTTTTTGGAGGTCGACAAAAATAGGCACTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGG # Right flank : TTGAGTTTAAGGTTACGTTCCTTTTTACTAGCTGCGATAACACCCATTCCCCGTCATAACAGGAAAAAATACTAGGAGATGATGCTTTGATTATTGACGTTCTACAACATGTGCCGCACGAAGGACCAGGACTTATTGCGAAATGGGCGAAAGAAAATCAACATCAATTGAAAGTTCATAGTTTATTTAATGAAAAAGATCAAGTTCCAACTGATTCGGAATTTTTAATCATTCTAGGAGGACCAATGGGAGTGAGTGATACCGCTGAATTTCCATGGTTAGAAGAAGAACGAGATTTGATAAAACAACTAATTGAGCAAAACAAACCGGTTTTCGGTGTATGTCTTGGAGCGCAACAAATTGCGACAGCGCTAGGAAGTACTATTTCGATGAATAGTGAAAAAGAAGTAGGCTGGTTCCCAGTTAACAGAATCTTCACTGAACTATCATTTTTTCCAGAGCGAATAGATGTTTTTCACTGGCATCAAGAGACTTTTTCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 115714-116475 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARTR010000003.1 Listeria seeligeri strain FSL L7-1175 NODE_3_length_316926_cov_25.824058, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 115714 36 100.0 30 .................................... AATCACAGCAATCAGCCTACACGCACTGAG 115780 36 100.0 30 .................................... CAGGTGCAAGAACACATGGGAATGTCAATG 115846 36 100.0 30 .................................... ACATTTATTAGGTAATATCATGCACACCAC 115912 36 100.0 30 .................................... TTAGAAGAGAGAAAAGAAGAATTGTTATAA 115978 36 100.0 30 .................................... ATGTAAACAGTTTGCTTCGTGGCGACATGG 116044 36 100.0 30 .................................... ACGCAAACCAATGAAGTGATAGCCAAAAGA 116110 36 100.0 30 .................................... TACTGTGTCCACCAATATCTGAAACGACCT 116176 36 100.0 31 .................................... CAGGATATGGTGCCGACCGGAACAGTTACTT 116243 36 100.0 30 .................................... AGTAGGATTCGCCTAATTGCTAAGGTGATA 116309 36 100.0 30 .................................... ACAGATGGGCGAAACAGCGTGACTATTTAC 116375 36 100.0 30 .................................... CACTATCAACCCAAGTCGATGATTATGAGA 116441 35 83.3 0 ..................T........-.A.TG..T | ========== ====== ====== ====== ==================================== =============================== ================== 12 36 98.6 30 GTTTTAGTCCTCTTTCATATAGAGGTAGTCTCTTAC # Left flank : CTGTTTTTTTAAGCTATCTTCTAACAATTGGGAGAGATTTATTTCTATTCTGTATTCTTCGCTTTTGTTAGGACTATTTTCAGGAAAATAAGATAAATTTTTTTTGAAACGATGATTTAAGAAATTTGAGATATTAAGTTTAGTGATATCTGAAACTTTTATTTCCCCACGTTCTTTTTCTTGTAATAATCCATGAAATAATTTTTTCATTTGTTTTTGTTCAGGACGACAAATAGTTTTGTTTACCACGCTTTTGTAAAAAGAACTTTTTTTGTGATGCATGATTTGTTCTGTATTATCTTGCATTTCATTTTCATAAACTAACTTGCCCCCGTTTTTATCCCTAGAAATTAGTACTTTTTTTCTATTAACCTCTACTTTAGTAATTCTCATAGTTTTCACCTCAATGATTTTTTTCTCTCTTCTATTGTACATATAATCACAAAAAAATAAAACACCTAAATGATGGATAAGTGTTTTTATACTTATCCACATTAGAC # Right flank : TTCCTACTTAATAATAGTAATTAAAACAACAAATGTAAAGGATATAATCAATATATTTAAAGTTTGCACGAGAATGCAATCATTTTATTCATAAAGATCATATCATTTATAAGCTCTATTTTCCATTTTCTAAGGCTAATAAATAAAACTGCTGTACCTATGGATCTAAGGAAGACTTATGCACACAGTACAGCAACTTTTCAGCATGATTTGTGTTAAAAACATTTAATTTATTGTAGCAATTTCTTGCGTAGTCACCAACCATCTTCCCGTGTCGTCTCGCACTAATTCCAAATCCAGTAGCACTTGACTTTCATTCTTCTTTTGCTTGTCGACTTGAAAAGTAGACAAGACTCGCACAGTTACTTGGCACTTTTCACCTTCTAAAAAGTAATGTCCTATTTCTTGTTTGGTTAAATTACTCTGTACTTTCACTACATTTTTAGAATCACTCGTTGTTTCCCCTTGTTGAAAGTAAGGAACCATTTCTGCCGTGATAA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTCATATAGAGGTAGTCTCTTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 42-671 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARTR010000013.1 Listeria seeligeri strain FSL L7-1175 NODE_13_length_5987_cov_37.107445, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 42 36 100.0 30 .................................... AATATCACTAATTAACCGTTCGCTCATTGC 108 36 100.0 30 .................................... TGGTAGCGGCGCTTAACGTTCTCTCCTAGG 174 36 97.2 30 ..........C......................... TGGGTGAACGATGAACGTTGGTGACACCCC 240 36 97.2 30 ..........C......................... AGAGAGACTCGTATACTCTGATATCTTTCC 306 36 100.0 30 .................................... TGATTCTGTTTTTTTATTCTTCCATCCCGT 372 36 100.0 30 .................................... TTGTGATTTGCCATCATCAACAAAGTCACA 438 36 97.2 30 ....................G............... AAAACGATAATTTTTACCAGTTACATAATT 504 36 100.0 30 .................................... TGTTTTTTAGGTTTTACAACCTGTTTTTTT 570 36 100.0 30 .................................... GATGTTTGGCCGCATTATCTAGTGCAAGTT 636 36 94.4 0 .....................A...A.......... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 98.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GCTACCAAAACAAAAATATTTCTCAACGCGAACTAGCCAAAG # Right flank : CAGAGAGGGTGAACTACAAAAGTAATATCCTTTACATCTGTTTTTTTCTATATATAGTGGTAAAACTAGTTGGTTTATGTTATAAATTTTCTACAAAAAGATCACCTCGTTAGTTTGTTGTTTTGTCACTTCTATTCTAACAAAGGTGGTCTTTTTTGTGTATTAAAAAATGGATTTGATTATTCCTCTCAAAAAGAAATTCTCAAATCCATTTTTCTACTTACTAGGATTTATTTCCCAGCCTCTTTTTCTATACGGACTGCTGTCTAAAACAAAACACTGAAGCAATTATCAATAACACAATCGCGGGAAAAGCTAAAAGGGCAGTAATGGCAAAACATGCGCACCCGATTATGCCTAAAATATGACCAATAATAGAAATCCCAGCTTTTTTAGATTTAACTAAACCGATAATATGAATAATAAGTCCAATAGCGGCCATTACATAAAAGAAAGCACCGACTCCGCTTGTTTGTGATCCATCTCCGCCTGAGAAACTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : GTTTTAGAGCCATGTTATTTTGAATGCTACCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 2-1093 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARTR010000018.1 Listeria seeligeri strain FSL L7-1175 NODE_18_length_1093_cov_57.774606, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2 36 100.0 30 .................................... TTTTGATACAGAAGATGAGGCTATCGAGCA 68 36 100.0 30 .................................... CCCTCTCACTAAGCGAAAGATTATCGTCCA 134 36 100.0 30 .................................... GAAGCAAACGACTTTATTTAAATGATGAAA 200 36 100.0 30 .................................... TGAAGCAAGCCATTCTTCTGCCGTCTCTTC 266 36 100.0 30 .................................... AAGCGAGAATATTATCTATTTCTTGCGCGT 332 36 100.0 30 .................................... TTTTGTAGCGAAACCTAAACCAAGAGCAAC 398 36 100.0 30 .................................... TCATTTTGGGCCAATCCATCGACTCGTTTT 464 36 100.0 30 .................................... ATTAAGTTTTTAGAAGGAGAGCAGCATTCC 530 36 100.0 30 .................................... ATTAAGTTTTTAGAAGGAGAGCAGCATTCC 596 36 100.0 30 .................................... TTGTTACAATAAAGCCCTTAACACCTTTGT 662 36 100.0 30 .................................... AGATTACTTTTTCACTGTTTATATGCGCGA 728 36 100.0 30 .................................... CCCCTTCTCTGTCGTCCTTTTTCGATAAGT 794 36 100.0 30 .................................... AGAAGCTTCAATGTTTGAAAGTGATGATGT 860 36 100.0 30 .................................... AAGCAACAATGAGTGAGCCAGTTATGATAG 926 36 100.0 30 .................................... GCTAAGTAAGCAAATCATTCACTTGATGGA 992 36 100.0 30 .................................... AAAAATATTTCTCAACGCGAACTAGCCAAA 1058 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : AG # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [1.7-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //