Array 1 6216-8299 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATUQ010000020.1 Listeria monocytogenes strain SCPM-O-B-8685 20length=13496, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6216 36 100.0 30 .................................... AGCGAAGAATCTTACATGGACTCCAAGGAC 6282 36 100.0 30 .................................... TCGTGATTTCTTCCTCATGCGCGCTTTTGA 6348 36 100.0 30 .................................... TTATCAGCAATTGAAACTATTAAAAATGAC 6414 36 100.0 30 .................................... CCTAGACCTAGATGCTACTAGAGTGGACGA 6480 36 100.0 30 .................................... TAATGCATCTTTATATTGATTTACCTCACC 6546 36 100.0 31 .................................... TGGAAATGAACGATTGTCGGCATTCACGAAT 6613 36 100.0 30 .................................... AGATATGGGCGAACTACCCGACGACAACAA 6679 36 100.0 30 .................................... GAAGAAGTCACTAGTTGGGTCAAGCAAGGC 6745 36 100.0 30 .................................... TAGTGCCAGTAAATTCAGTTCCTCCAAAGG 6811 36 100.0 30 .................................... TGTAAATGCGTTTAAATCGATGGGAAGCGC 6877 36 100.0 30 .................................... ACACGTGTGGAAGAAGAGGGCTCTGACGCT 6943 36 100.0 30 .................................... GTATGAAACGGTTAAATGGATCTCTATAGC 7009 36 100.0 30 .................................... TTTAATGATTTTCTTTTGCGCGCCGTTGGT 7075 36 100.0 30 .................................... GAATTTTTTTGTAAGATCGACAACTTTTTC 7141 36 100.0 30 .................................... TTGATAATGATAAGGCTGTACGGATTATTC 7207 36 100.0 30 .................................... TAACAGTGTATTTCTATTGCTCGGTGTGTT 7273 36 100.0 30 .................................... TGGAGATAACGAAGAGTAAAGCGAGGCAGC 7339 36 100.0 30 .................................... GCGTTGAACCAGAAGGTGGGAAAGAAACAC 7405 36 100.0 30 .................................... TGGTAATTTAGTATCTATTACGGCTGGGAA 7471 36 100.0 30 .................................... AGTTCATGCAGATGTTCCAACAGACTATGA 7537 36 100.0 30 .................................... AACAGCTCGGTTCACAGCCCAAACAGGCGA 7603 36 100.0 31 .................................... TAGCATCCCTTTGTTGAAAACATAGTCTGAA 7670 36 100.0 30 .................................... TTAAATTTCCCTTCTAACACTATCTATCAA 7736 36 100.0 30 .................................... ACGTGATGGTCCTTGGAAAAGGAGATTACT 7802 36 100.0 30 .................................... TAGTTATTTGCTTAGAAATGTCATCCATCA 7868 36 100.0 30 .................................... CTAGAAGCTTTGACATTAATATTACGCTTA 7934 36 100.0 30 .................................... AAATAATTTTTTTGATCATGTTGCAACAGC 8000 36 100.0 30 .................................... TGCAATATTGTCTGGATCTTTTTTCTTGTT 8066 36 100.0 30 .................................... AGTTAGATAGATAAACAAACTAAACAAAGG 8132 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 8198 36 100.0 30 .................................... TGTCTGAATGTAGTTGATATCTTTAACTTG 8264 36 72.2 0 .........A..CA.....C.....A.C.A..C.TA | ========== ====== ====== ====== ==================================== =============================== ================== 32 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : AGAGACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAGGACGGAGAAAAGTTTCCTCATCTCTATATATACTAGAGTGGCTTAGACTTCTTAAATCCGAATTTTGAAATGAATGTTGACCAAGATAAAGATATAAATAAATTGTTTCCCTATTCAATTCGTTTCAACTCAACTTGCAAATTTCAAGTTGCTACAAGCAAAGGGGATATACCGTTGAAAGTGGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATTTTATATGATTATATTCTAAATGCGAGTAAAAATGGTGACACGCTTGAACTATATACTGTTTGGACAGCGAGAAAGATTTACCGTTAACGCACAAACCAGAACTGCTTTAACTATCGGAAATCTAGTTTTAAGTGACAGAGAGCTATTAATAATTAAAAGTGAGACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 155061-155801 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATUQ010000002.1 Listeria monocytogenes strain SCPM-O-B-8685 2length=461879, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 155061 29 100.0 36 ............................. TCTTTAGTTGTTACTTGTTGGTTAATGAGATCTACC 155126 29 100.0 36 ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 155191 29 100.0 35 ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 155255 29 100.0 37 ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 155321 29 100.0 35 ............................. CGCTCTGACCTGTTCCTTGTGCAACACTCGTTACA 155385 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 155448 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 155512 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 155577 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 155641 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAACGTGTAGTATT 155707 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [155730] 155773 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 12 29 95.7 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : TGAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //