Array 1 56446-55577 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAQOG010000007.1 Providencia rettgeri strain 592m/8 NODE_7_length_146246_cov_51.437836, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 56445 28 100.0 32 ............................ TTGCAATTCATCCCTCAATATCACTCGATTTG 56385 28 100.0 32 ............................ AGCAGTTCCAGACCCTCGCAGTTTCAAAACTG 56325 28 100.0 32 ............................ TCATTGACTGCAACTGGGTAGCAACGAACGAA 56265 28 100.0 32 ............................ TCATACAGCACGGCAAAAGTATTCTAATCGCT 56205 28 100.0 32 ............................ GTAGGCGTTGGTCTTTTCTTCGCGCTCATACC 56145 28 100.0 32 ............................ ATCATCCGTTATCGCCCAAATCTTATTGGCCC 56085 28 100.0 32 ............................ AAGAATAACTCCGGTAATAAAAAATAAAGAAA 56025 28 100.0 32 ............................ TGCTCCCTCTCATATTCAAGTAGGCAAATATA 55965 28 100.0 32 ............................ CGTAGGTAGGTGATCTCGATGCTCTAAATAAT 55905 28 100.0 32 ............................ ACGCTAAGATAGTGTCAGCGACAAAGGCCGGA 55845 28 100.0 32 ............................ ACTGCTCGCAATCCGTTTTCATGCTCCTGCGG 55785 28 100.0 32 ............................ GATAAAATCGGGGGGATTTGAAAAGAGCAGGG 55725 28 100.0 32 ............................ ATCTGATGCCTTTGGGGTTATCTTCAGAGTTA 55665 28 96.4 32 ......................C..... AGTGGATTAAAGAGCTTAATTTATCAACTTAA 55605 28 89.3 0 ...T......A.........T....... | G [55579] ========== ====== ====== ====== ============================ ================================ ================== 15 28 99.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTAAATCTATTCAAACCGTGCCAGAGCAAAGTGTTCCTGTCAGTTATATTCGACGACATGTAAAAGGCCAAAACCGGATAGAAGCCGATATGCAGCAAAAAGCACGTTTATGGTCTGAAAAATCAGGTCAGTCAGTGGCGCAGTGCTTGGAAGTGTTATCTAAAAGTCGGCCGAAAGCCAATAACCGTTTACCGTTTATTTGGGTTACAAGTTTACATGCAAAGAATGAGAAAACAGGAAGCCGGCCTTTTCCACTCTTTATTGAAAAAGTGATAGCAACACAAATGCAAGCTGGGATGTTTAATTGCTATGGTTTAAGCCAGCTTTCAAATGACCAAACGTTGGTTGCAACGGTTCCTCATTTTTAACCATTATTTTTTGTTCTTTAAAAAATAACTTTTAAATCAGTATGTTATAATTATTCATAAATTAAAGGGTATTTTATAATAAATACCCTTAACTAATTGTTATAGCATGATTATTATATTAAATTGCATA # Right flank : GAATATTAAAGAATAGATATCTAGATTCTCTAATTGGTGAAAAAAATAAATATGAGTTAAAACTAGTTTTTGTGTAATGAGTAGCCACACTGCTCTTCCTTAAGGTAAATTTAATATCAAATATAATACGTATCTATCATTCGATAGCTTAGAAATGAAATATAGAACGGGTATTATATTACTGCCACAAAGGCAGATTTTGATTAGAGATAAATACCTGAAAAATAGATCGGGTAACCAGATAATAATAGGGATAACTAGGAGGGGTTATGAGCTTTGAGTTTGAAATAAATTGTTATTGGTTTTCAATCATCATTCGATTTTATAAATGATTTTATAAACCTGCATTTAATTAAAAAAATACAAACATCACGACTCAAATAAACAAATTAAACATCAATGACAATTGCTCAAAAGCTTGGTGGATAAGGCGTTCAGTATATCGGGGAAGGATGGAGATAATTACCCCTAGCATACTGATACCTATAGTTAAGGTGAGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 67093-65083 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAQOG010000007.1 Providencia rettgeri strain 592m/8 NODE_7_length_146246_cov_51.437836, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 67092 28 100.0 32 ............................ TACTGGCGACACTGTAGAGGCAGACACTACAT 67032 28 100.0 32 ............................ TTATCGATGAATGCGGCATTGAGGAAGAGAGT 66972 28 100.0 32 ............................ AAATAGTGAGCTAGTAAAAGTAATTTCAGAGA 66912 28 100.0 32 ............................ CGTATCTGCTTTTAAAGATATTCATACTTATC 66852 28 100.0 32 ............................ TTTGTGACGACTTTTTTTGAACTGTTTTTCCC 66792 28 100.0 32 ............................ TGATCCGTCTGTATTAGCGCCAACTCTTCTTA 66732 28 100.0 32 ............................ GATTGAATTCCGCACCCATTCCCCGGCCATCC 66672 28 100.0 32 ............................ TTGCTAGTTTTGGCCTGTTCCTGATTTCCAGC 66612 28 100.0 32 ............................ GTTCTGGACGGGGGATTTCTTCAATAATGCAC 66552 28 100.0 32 ............................ CAAATGCTCGACAGCTAAAAATCAATTAATCC 66492 28 100.0 32 ............................ TGTTCATGGGGATAGTATGTCACCAGTAATTC 66432 28 100.0 32 ............................ AGATACAACAACTTTATTAAATAAGTATTTAA 66372 28 100.0 32 ............................ CCTTACCGGTACCAAACTCAATACGGCATGAA 66312 28 100.0 32 ............................ CATCTCAAAAAACAATTAAAAGAGATGTGGGA 66252 28 100.0 32 ............................ TTCTTGGAATGTTCCTGCTGGAGCGTACCCTG 66192 28 100.0 33 ............................ ATGCTTAGTGAGTTGTAGCCAATCCCTTTATTA 66131 28 100.0 33 ............................ CCCTGAAAATCAATGTGCTGCGTTTACCTTTGA 66070 28 100.0 32 ............................ TCTGGATACTTAGCTTTAAGCATCATAAGAAA 66010 28 100.0 32 ............................ TTTTCGAGTGAGTCCGACGGTGGCAGCATCGC 65950 28 100.0 32 ............................ ATCAAGGTGGGCTGTGGTGAGTTGATTAATAG 65890 28 100.0 32 ............................ TACTTTTGAATTAGAAAAGTAACCGCTAGCCC 65830 28 100.0 32 ............................ GAAGCAAAGTAACATTGCCCGACATAGAAATT 65770 28 100.0 32 ............................ CATTTAACGAAACCACTATCACTATCGAGCAT 65710 28 100.0 32 ............................ TGATTGAATGCTTGTGGCAAATCACACATATC 65650 28 100.0 32 ............................ TTTCGCAGCAAACCAGACTTTGCCCAGCCCAC 65590 28 100.0 32 ............................ TGATTTGATTTTGTTGGCCATGACTTTAAGTT 65530 28 100.0 32 ............................ CGAGGCTTGAAGATAACGGTGTCATCACTGAT 65470 28 100.0 32 ............................ GACCAAACAGGCAATAGCGGTGAATTAGTTGC 65410 28 100.0 32 ............................ AGTAAAACCAGTGCGCAAGATGCCGCGAATTA 65350 28 100.0 32 ............................ TGCCAGTAGAGGCTTTTCGCTTCCTGTCTCGG 65290 28 100.0 32 ............................ GCATTAATTTTAATTCTATGGCCATTAACATT 65230 28 96.4 32 .........................G.. GCAGAATGAGCCACCGATGGATTGGGATGATC 65170 28 100.0 32 ............................ TCTGTTGCGATAATGGCCCGTCTCGCCGACTT 65110 28 92.9 0 ......................A.A... | ========== ====== ====== ====== ============================ ================================= ================== 34 28 99.7 32 GTTCACTGCCATACAGGCAGCTTAGAAA # Left flank : ACCAAATTTCTAATATTGAAGCGAAACAAGGCTTACAACTGCAAGAAATTGATAAATTAGATTTCTTGGCAGATACCCGTTCGATTCAAAATGCAGCTCGTAAAAGTGAGCTGCTTGAGACCAACTGGACGGGTACTACGACGGATTACTATAAAGAAAAGGCGATGTTTGATGCATCCCAAAGTATTTTTAAAGATTTAAACAGTATGTCACTTTTTGGTAACCGTTAATAAATTAAAGGTTTAATTTTACTCACCGCGCTTTGGAGTGATTCGAGCGCGGTTTTTTTTATTTTGAGGTACCTTTATTTACGCACTATTTTCGTTTAGTGCATATTGCATAAATCCCGATTTGTTTTACCCTAGTTTGACCTTTATTTTTTGCTATTTAAAAAATTAATTATTAAACAATAAGTTAGAACACCCTCCCAAAACAAAGGTATTTTGGTGTTTATAAAGCTAGTACATTGTTTTCCTTTGTTTTATCTTATTTAACTAATA # Right flank : CAGCCAAGGAGTTATTTTTACTGGATATTCTGTGAAACCCCTCGCAAATTTGGCTTTAGTGATAATTTAAGGCTTGTTTCATTGGTTAAAGCTTATTCTAATAAGATTGATTCAAAAAACTTATTATTTAAGGAAGAATTCAACTGCTTATGGATGACTTTTCACCTAGTGACTTAAAAACCATCTTACATTCCAAGCGCGCTAACATGTATTACTTAGAGCATTGTCGAGTGATGCAAAAAGATGGTCGAGTGTTGTATTTCACAGAGGCAAAAAATGAAAACCTCTATTTCAATATCCCTATTGCAAATACAACAGTTTTGTTACTTGGTACAGGAACATCAATTACCCAAGCCGCAATGAGAATGTTATCTCAAGCGGGGGTGCTAGTTGGGTTTTGTGGGGGTGGTGGTACACCTCTGTATATGTCTACAGAAGTAGAATGGATGACACCACAAGGCGAATATCGGCCAACGGAATATTTACAAAGCTGGTTATCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //