Array 1 1135213-1132854 **** Predicted by CRISPRDetect 2.4 *** >NZ_WUDY01000001.1 Listeria monocytogenes strain LM11 NODE_1_length_1442517_cov_82.965, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 1135212 29 100.0 35 ............................. ATCGACAAAAATTTAGGTTATGCGTGGATTGTTCC 1135148 29 100.0 36 ............................. AAAGATAACTATGATTTTGCTGATGTTTCTGACACG 1135083 29 100.0 35 ............................. AGCGCTGCTTTGAGTAAGTTATTTTCTTCTACTGC 1135019 29 100.0 37 ............................. AAAATATTGGGGTGTTTAGCAAGTTGTAAGACGCGAT 1134953 29 100.0 35 ............................. GTAAAATGTACCATTCGCATTTTCATCTGTTTTAA 1134889 29 100.0 35 ............................. CAGCCACATAATGGACTGGCGCCATTTTACCTTCG 1134825 29 100.0 36 ............................. CATACTGTTTCCAGAACAGTTGTTTACTGATGTTCC 1134760 29 100.0 36 ............................. TTAATAAAAATAGCTTGGGGGTAAGATGATGCTAAC 1134695 29 100.0 37 ............................. TTTTTAGCGTTATTCTTAATCGTAGCACCAGCGTTTT 1134629 29 100.0 34 ............................. CTGATTAAGAGTTGGTTTTGTGTTGAGCAGTTAC 1134566 29 100.0 34 ............................. ATAAGTCCGGCTACTTTCGAAAACACGCTACTAA 1134503 29 100.0 34 ............................. TGTTCTTCGTAAAACCGTTTGTTTTGAGTACATT 1134440 29 96.6 36 A............................ TCACTTTTACTGTTTTAAGAACACTGGATAATCAAA 1134375 29 100.0 36 ............................. ATTGGTTTGATAAAGATCAAAACCAAGTTGCTGAAA 1134310 29 100.0 35 ............................. GAAGAAGGGGTTATGGAAAAGGAACTAATTATAAA 1134246 29 100.0 35 ............................. ATATACGAGTGAAAGGAAGCGTCTAAATGACTAAG 1134182 29 100.0 36 ............................. ACCTTCATAAGCAATGCTAATAACTTCAAAAGTCTT 1134117 29 100.0 35 ............................. CGACAAGGAGATTGCTTTATTGAAACGGGAAGATA 1134053 29 100.0 35 ............................. ATCGATGCCGCAGTTTCGAAAGCAAAAGCTTACAC 1133989 29 96.6 34 ......G...................... ACAATTTGTGAGTTCAGTAGGTTTATCCCCACTC 1133926 29 100.0 35 ............................. AAAGGTTCGGACTTGGAGAAAGTAGCCGACTATTT 1133862 29 100.0 36 ............................. GTTGTCCATATGTCTAATTCTTTGATATACACTATT 1133797 29 100.0 38 ............................. CTTCCTTTTTAGAGGCCTTTTCCTTCTCTTTTGCAGCA 1133730 29 96.6 36 .............G............... TTATGAATTAGTTTTGTTTTATACGTTGTTTTTACA 1133665 29 100.0 35 ............................. ATTGGAAAGTGTTCTAAAAGCACTTGCACAATGTC 1133601 29 100.0 36 ............................. CTGATGTAGCTTATTTTTAACTGTTCGGTGAAATAA 1133536 29 100.0 37 ............................. AAATACTTGCAAGTTTATCTTGATGCTTCTGACTATC 1133470 29 100.0 36 ............................. CACGGTATCTACAATGAGCATCTGTCAAAAGACTGC 1133405 29 100.0 36 ............................. TCAAGTGGAAATCGAATATAAAGATAATCATTTTTT 1133340 29 100.0 35 ............................. CTATTGAGTTTTGTATTATTCCAGACTGGAATTCG 1133276 29 100.0 34 ............................. ATCGCAATATCATTCCCTAAAATCATTTCTATTG 1133213 29 96.6 36 .........................G... TTTGTTAACCCACTAGCTAAACCACCAGCGCCCTTC 1133148 29 100.0 37 ............................. TTGATTATCTTGTAGGCCGCACAGACAATCCGCTTAT 1133082 29 100.0 36 ............................. ATAAGAACAAACGGAACAAATGATATTTTAACGCTT 1133017 29 100.0 40 ............................. CTCACTTCCACCACCTCGCATTCTGTGTTTGTTTCGTTGA 1132948 29 100.0 36 ............................. ACTAACAAAGCACCTGTAAAAGCTAATGCAATCGGA 1132883 29 93.1 0 .......................C....C | A [1132858] ========== ====== ====== ====== ============================= ======================================== ================== 37 29 99.4 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCACTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTCTAATAGCGTAAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAGAGCGG # Right flank : TTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTACATTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCTGCCACAACTACACAGCTTAAAAAGAAAATCTGCACAGTTTCCGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCGACACCAAACGTCTTGGCTGCGAGTTTGGTATTGGAGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGTCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //