Array 1 146174-147547 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACERM010000012.1 Pectobacterium aroidearum strain MY18 12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 146174 29 100.0 32 ............................. GGCTTCGCTGCCGACACAAAGCGCGACATGGC 146235 29 100.0 32 ............................. GCCAGGCGTCGCACATTTTGCGGCATACGTTC 146296 29 100.0 32 ............................. CGCGATGGGTTCCGCTTCTGGGGCAACCGCAC 146357 29 100.0 33 ............................. CCTGTTTCAGACGGCTGGTGTTCTCACACATAC 146419 29 100.0 32 ............................. GCTGAATTTGTTGATAGCTACGTTGAAGCATC 146480 29 100.0 32 ............................. GCGCTTTATCTCGCCATCGATAACTCGATCCA 146541 29 100.0 32 ............................. TATACGTGGGTTAGTGCTAGTAAATTTAAATC 146602 29 100.0 32 ............................. ATGTCGCTTGCAAGAATTTCGGATATCTGGCC 146663 29 100.0 32 ............................. AGGAAATTGATGGAAACACTATTCGCGCTGGT 146724 29 100.0 32 ............................. TTGTTGTGACCGCCAACACCGAGAACCAGCTA 146785 29 100.0 32 ............................. GAAAAACACAATGCCTCAAGTTTCACGAATTC 146846 29 100.0 32 ............................. GGTTTTGTCAGAAACGCCTCCGCTGTGCCGAC 146907 29 100.0 32 ............................. ATGAGACAGGTTATATCGGAAATAATGGACTT 146968 29 100.0 32 ............................. CGTAGGTTTGGCTTTTCTTCTGGCTCCGTTGG 147029 29 100.0 32 ............................. TTCTCAGGCAGACTGGTGATGCCGGTACCTTT 147090 29 96.6 32 ..A.......................... GCACAACAGGCGGTGATGCAGTTCGGCGGCGA 147151 29 96.6 33 ..A.......................... CGATTTTTCGATAACGGCGTGCTGGGTTCCGGC 147213 29 96.6 32 ............T................ AGTACGGGGGGTACCGACGTCAGTTGTGTATT 147274 29 100.0 32 ............................. GACGAAAACTACCACTGGATCGCCATAGTAGA 147335 29 89.7 32 ..A.........T..........G..... TAGGGCATAACAGAGGCACTAAAGATGCTGCT 147396 29 93.1 33 .............G.A............. TGGCACCCCACGGGATGCCTATATCTGCACAAT 147458 29 96.6 32 ............T................ TCCTATATAGACACGACAGCGGCCAGCACGCT 147519 29 89.7 0 ............TT..............C | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAAGAGGTGTTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGATGATGCACAGCCGCCTGCGATCCCTGAACCGAAGCCGTTTGGCGACAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAGAATGTCCCACTACGTTTGCGTGGCAGATTGGCGGTGTGGTTACTGGAAGTCCGTGCGGGAGTGTATGTCGGTGATACTTCACAGCGGGTGAGAGAGATGGTCTGGCAGCAGATTATTGAACTGGCGGAGCAGGGCAACGTTGTGATGGCGTGGGCGACCAATACGGAGTCTGGTTTTGAGTTCCAAACGTGGGGAGAAAACCGCCGAATGCCGGTAGATCTGGACGGTCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTAATTTTAGA # Right flank : CTAGTCCGTGGAAGCGGCTAAAGGATTAGCTGTTCTGGTTCGCAGTGGTACAGCTTAGCCAGTTTTTCTCGGGTGCGTTTCTGCGGCCTTGAATCTGGGGATTCAAGCTGAGAGACGGCTGCTTGGGTCATGCCAAGCGCGGTTGCAACTTCTTGCTGAGAAAAGCCTCTGAAAATTCTCCAGGCTGCCTGTAAGCTGACGTCTTGATCAATGTGGATGCTAACCACTTCGTGAGGAATAGAGACGTCATCCTCTGCGCCATGATCGTAGGGAATGCTCTCATAGAGGGCGGGATCGTCAGCATTTTCAATAAGTTTCTGATATAACTCATACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTTCGATGGGTGAAAATCAGATGTGGTGTAAAGAAGGATGCGCTTTCCTTCTTAGTATGTCGTCGTTGTCCTACGCTTGACTTCAAGTA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 148420-148692 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACERM010000012.1 Pectobacterium aroidearum strain MY18 12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 148420 29 100.0 32 ............................. CGATTGATGATCGACTCGCAGAAATCGCCGCC 148481 29 93.1 32 ..G..........T............... TAGGAGTTATCGCTATCATGAATATCAGTACG 148542 29 93.1 32 ..G.....T.................... GGATAACAATTTCACCGGGCTATTTATATGAC 148603 29 100.0 32 ............................. GTAATCAAATTCCCCGGACCTGAGTCGGGGCA 148664 29 93.1 0 ............T..............T. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.9 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTTCGATGGGTGAAAATCAGATGTGGTGTAAAGAAGGATGCGCTTTCCTTCTTAGTATGTCGTCGTTGTCCTACGCTTGACTTCAAGTATCTCGCACACCTGTGGTATTTCGTTGATTAGTTCAAAGATAATGCGGTAATCCCCAACCCGTAGCCGATATTGTTTACCAGACGATTCGAGTTTTTTCAGATCCAGATTCACATCTGGAAATGTACTCAGCTCGCCCACTTTTTCTTTGATTCGTTTTCGATATCTGGTGTCAATGGTGCCGAGTTGTTTTAATGCCCGTTTTGACCAACTAATCTTAAGCATGCATCCCTCAAACGAAATTCTTCCCTGATATAAGTTAATTATAAGACAATTTAAGGGTTATGTTCATTTTTCTTATTTTTTTTGTTGATGATTATGCTGTTCCTTCAGGGACAAATCGCGGGAATTTGACGTTGGATCAGAGCCATATAC # Right flank : GGGCTTATACCCCTTGTTTCATGTTGGTCTAAATATCCCCTGCACGGTTCAAATCCCGCTTCTGGCTGGCGTGATGGGGGATTGCGTGTCAGTATTAAACGATGCCCATCATTTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTCTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCCACAGAGCATGCTGAGAAAGCGGCACTGTCCGAACAGCTTCAGTCTTATCAGGCGGGTAGCGGTGCTGTTCCTGTTGGTCAGACGACGCGGTATGATTTCACCCGCATTAGCCCCGCCGAGCTGTATGAAACGGTAGAAGGCCTTGTCAGCAGTGGGCGGTTGGGGCGTGAAGAGGGTTCCGCGCTACTGGGTTTTATCTCGTCGCCGCGCGAAAATGTCGGCAGTGTGCCGCCTTCCAATGTCTTTCAGCCTATTAATGTTTTCGACACCATTCAGCAAGGTGTCGCGGGT # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //