Array 1 178039-176617 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060414.1 Neisseria musculi strain NW831 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 178038 36 94.4 30 ...A...........C.................... GGGGGTGTAGTCATCTAACCACACCTCGCA 177972 36 97.2 30 ...............C.................... TTTGTCGGTAACCACCACATTTGTATTTTG 177906 36 100.0 30 .................................... TTGACCAATTGGCCAAGTGTGGTATACCTG 177840 36 100.0 30 .................................... GCCATACGGAGCATTAGCGGTTCGTTTGAA 177774 36 100.0 30 .................................... TAAACCAACTGCTGCCCAGTGCCTCGTCGA 177708 36 100.0 30 .................................... ACGTGCAGGACGTGAAAGAAGCAAGCCGCC 177642 36 100.0 30 .................................... TATGCTGTTATCCCCACCGGTTCAGTCAAG 177576 36 100.0 30 .................................... CATTTCTTGTAATAATGGGCGATTTGTATT 177510 36 100.0 30 .................................... GATTTCTTTAATTGTAATTGTATATGTCCT 177444 36 100.0 30 .................................... GACAATGCCGCCATCGGGCAACGTAATAAC 177378 36 100.0 30 .................................... TCATAAGCATATTTGGCCAATTCAGGTCTT 177312 36 100.0 30 .................................... TTCCCAGCACGATGCCATTCCGACAATGAC 177246 36 100.0 30 .................................... ATCTACATATTTGCCCTTTATCAGGCGTTT 177180 36 100.0 30 .................................... TTTGTTTCTCTTCCTCAATTTTGGCATTCA 177114 36 100.0 30 .................................... AGGTATGAAATCATTATTTCCCGTTTCCAC 177048 36 100.0 30 .................................... TAAACCAACTGCTGCCCAGTGCCTCGTCGA 176982 36 100.0 30 .................................... AATACTTCGGTTACACCCGGCGTGTTCAGG 176916 36 100.0 30 .................................... ACGTGCAGGACGTGAAAGAAGCAAGCCGCC 176850 36 100.0 30 .................................... CTTAAATTTTTTGTCATCGGCAAAAGAGAA 176784 36 100.0 30 .................................... AGTGTGTTGGAGCGTAGTAATCTATCATGG 176718 36 100.0 30 .................................... TTTCGCCTTTGCATACCGCTCCATACCGAT 176652 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.6 30 GTTGTAGCTTCCTCTTTCATCTCGCAGTGCTACAAT # Left flank : TTCGAAGTATCCGGCACGATTTCGGTATAGACTTTGTCGTCCCGTTTTAAGATGCCGAAAACAATGGTTTTGCCTCCCTCTCCCAGCCCGAGTTTACCTCAGATGCGCTTTGCCTTGGAATAGGATTGGTCTGATTCTACGGTGTCTTAGAAAGAGATGTACTGCCCGCATTCGCCAGCTGGGCACCGGTGTAACTTCAGGTACGGGCTGTTAATGCTTCCGACACTGATTCCGGTTAGTTAGCGGTATCGGAAGCGTTCAAATAGAAGGCGGAAAGCCACAGGACCTGACGGCATTGGGCTCGGTAATTTTACTGCACTTTTAATACTTGTTTTTTAATTTCATTTCAGAAGCTTATCACTATATTGGGTGATTTTGCTTCCTAAGTCCCCTATACAAATATATTAATATCATAAGTTTATGAAATAGCAAATTAAAATTCATTCACTACATCTCTCTTAGTGCTGCAATATTATGCACATGGCACGTGCCGTATCTCC # Right flank : ACCCAAGCAGGGAATCCTTGTTTTATAAGGATTCCCTGCTTTATTTTGCTCTGAAAAACTGTGTCAAAACAGTAAAAGTTGGTCGGCATTCACCTTTTTTTCACGCGGTTTCGGCTCGCCGATCAGCATAATCATGCCTGCAAATTGCTTTTCGGTTACCTCTAAATAGCGGACTTGCCCCTCCTCCGGCAAGTGTGCCTGCAGCCGTTTGTGGTGTTTCTGCAACGCATCTCTGCCGCGTACGATGCGGGAGTAAACAGATAATTGCAGCATTTGGTAGCCGTCTTTTTGCAAAAATTTCCGAAATTGGCTGGCGGCTTTGCGTTTTTCTACGGTGGTGACCGGAAGGTCGAAAAATACGATTAAGCGCATAAACTTGGCCTCACTCATAATCCTGCACCTTTAAAGGAAGCATCTCGGGCAACTTCAAATTTTTTGAACCGCCGGTTAAGGCCGTCTGAAAAGACTGTACGGTGCGGTCGATGGCAGCCAATAGGGAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTTCCTCTTTCATCTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 2237168-2238589 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060414.1 Neisseria musculi strain NW831 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2237168 36 86.1 30 ............AT.CC.............C..... TGGTCGGGGCGTATAAACACGCTTTCGGGA 2237234 36 94.4 30 ...............C.......A............ TTGCAGCGAGCGCGGGGCAATGATTTCTTC 2237300 36 100.0 30 .................................... CTCGGCCTTGGCCGATGCCATGAGAAACGG 2237366 36 100.0 30 .................................... CCGAATCGAATGTGTAGCGTCCGCCTCTGT 2237432 36 100.0 30 .................................... GATTCCCGCCTATACGGCGGGGAAGCCAAG 2237498 36 100.0 30 .................................... TTCTTCGTAGCTGTCGAATAAACCGTGAGA 2237564 36 100.0 30 .................................... CTTTATAAAGCGAACAAGCGCCGCGCACAG 2237630 36 100.0 30 .................................... CCGACCTGGGTCTTACCGTTACCGCCTTTG 2237696 36 100.0 30 .................................... CGACAAGGCGCAATGCCTTGATACCCGATG 2237762 36 100.0 30 .................................... GAAAAGTGACCTTTGCAGGAAGAGTGTTGC 2237828 36 100.0 30 .................................... AGGGCGGTCAATCCCTAAAAGGCCGCCAAC 2237894 36 100.0 30 .................................... TAAACCAACTGCTGCCCAGTGCCTCGTCGA 2237960 36 100.0 30 .................................... AATACTTCGGTTACACCCGGCGTGTTCAGG 2238026 36 100.0 30 .................................... ACGTGCAGGACGTGAAAGAAGCAAGCCGCC 2238092 36 100.0 30 .................................... CTCGCCGGGCACAGGCTGCCACAGGCTGTG 2238158 36 100.0 30 .................................... CCATTGTCCTGATTTTTGACGAAACCTTCA 2238224 36 100.0 30 .................................... AACAGAATTGCGCTGGAACGCGCCATGCTG 2238290 36 100.0 30 .................................... AAGGATATAAACAATCTCAGCTTAGAAGAA 2238356 36 100.0 30 .................................... GTGAAACATAGAAAGACGGGCAAGAGGTAA 2238422 36 100.0 30 .................................... TTTGCTCATAACTCTACTACTTCCCAGCAC 2238488 36 100.0 30 .................................... ACCACTTGAGTTCTCCGGTTTCCACACTCT 2238554 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.1 30 GTTGTAGCTTCCTCTTTCATCTCGCAGTGCTACAAT # Left flank : AACCGATAATGCTGTGGCAGATATTTGAAAGGAACTCGGTTTTATCACTCGGCCGGCCGTCTGAAGCGGCCATGCCCGATACCGGCGCGTCCGTTTCAGACGGCCGTCAATCCCGCCTTTGCCGGATTCCCTGCCCGGTTCGGAGCAAGGCGGCACCGCCCGTCAATATGCCGGCGTCCGATGCCTCCCCGCTTTGCCGGCGGGGGCGGCCGAAAGAAAAACCGCCCGCTTTTTATCAACTGCTTTCCCGAGCCGGCCATCGGTCAGCAGGCGTTTGCAGACAGCCGAATCACAAACCGGCCCTGCACGACTTTCTGCCCTGCGCCCCGCCGGTTGCCCAAACAGAGCGTAAAGACTGTCTGAAACCGAGCAAGGGTGTCTTGCCTTCATCAGGCGGTGCAGTGGCGGCCAGGGGGAAACCGCCCGGCCTGATATGTGGCGGATATGTTGAAGCAGGCGGACAATTCAGGCCTTGAAACCGGAAAAAGTATAGTGTGTTA # Right flank : TTACCCAAGCAGGGAATCCTTGTTTTATAAGGATTCCCTGCTTTATTTTGCTCTGAAAAACTGTGTCAAAACAGTAAAAGTTGGTCGGCATTCACCTTTTTTTCACGCGGTTTCGGCTCGCCGATCAGCATAATCATGCCTGCAAATTGCTTTTCGGTTACCTCTAAATAGCGGACTTGCCCCTCCTCCGGCAAGTGTGCCTGCAGCCGTTTGTGGTGTTTCTGCAACGCATCTCTGCCGCGTACGATGCGGGAGTAAACAGATAATTGCAGCATTTGGTAGCCGTCTTTTTGCAAAAATTTCCGAAATTGGCTGGCGGCTTTGCGTTTTTCTACGGTGGTGACCGGAAGGTCGAAAAATACGATTAAGCGCATAAACTTGGCCTCACTCATAATCCTGCACCTTTAAAGGAAGCATCTCGGGCAACTTCAAATTTTTTGAACCGCCGGTTAAGGCCGTCTGAAAAGACTGTACGGTGCGGTCGATGGCAGCCAATAGGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTTCCTCTTTCATCTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //