Array 1 30576-34023 **** Predicted by CRISPRDetect 2.4 *** >NZ_ORZJ01000221.1 Xanthomonas fragariae strain PD 2905 isolate PD 2905, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 30576 28 100.0 32 ............................ TGACGTTGATCTACCGGCCGACGCCTTCACGC 30636 28 100.0 32 ............................ TCTCAGTCGGCAAGACCCATGTCTATGGCTGA 30696 28 100.0 32 ............................ TACTACCAGGAGGGTTGGCCAATGAAAATCTG 30756 28 100.0 32 ............................ GAGAGTGAAAAGTGGGTTTGCAGGGCTGGCTA 30816 28 100.0 32 ............................ ATAGTGCCTTGCCCGCAAACTTACCATGTTCC 30876 28 100.0 32 ............................ ACATCCCTGGTCTTCACAGAGTAGGGGAGGTG 30936 28 100.0 32 ............................ TTGCTGCATGAAGGTGTACCCAACGCAATCGC 30996 28 100.0 32 ............................ CTCTCCTCAGCCACGGACCAATGCAATAGCAA 31056 28 100.0 32 ............................ TGCTATGGCAGAACGGCTCAGAGTTTCGTACT 31116 28 100.0 32 ............................ CAGCGCTACCAAGATGCAAGCTACCGACATGA 31176 28 100.0 32 ............................ AAAACCATTTGTGCCCGTAGAGCTTTCCATCC 31236 28 96.4 32 T........................... TCGACGACGCCGAAGAGGTTCGCCAGTGGTCG 31296 28 100.0 32 ............................ TGCGGGACGTGCTCCGGCACAGACGCGAAAAG 31356 28 100.0 32 ............................ ATACTTCGACCGTATACGAATAACGCTCTCCC 31416 28 100.0 32 ............................ TAGATACCTCTAGGGGCGCTGGCGGGGTTTCT 31476 28 100.0 32 ............................ GTATGGAAGCACCCGCTTTAGCTGTGCTGAGT 31536 28 100.0 32 ............................ GCCGGGGAGAGAGGCACACGCAGGTTTCCGTT 31596 28 100.0 32 ............................ AAACTTGGACAGACAGTGCTACGATGACTAGG 31656 28 100.0 32 ............................ AAGCAGGAAACCCTGCGGCGTGGGAAGAGATG 31716 28 100.0 32 ............................ CCCAAACGAACTGGTCCAGGCTAGGATCCGTT 31776 28 100.0 32 ............................ TTCTGGGACCACACAACCTCGCCTGCGTGCAC 31836 28 100.0 32 ............................ GTTCAGGGCAGGCGAAAGGTCTCAGCGCTGCA 31896 28 100.0 32 ............................ GCATCGACCCAATGGCCGCCCTTGCCAGGCTC 31956 28 100.0 32 ............................ AGGACGTTTGAGTAGCCCGGCAGGGTCTGTTC 32016 28 100.0 32 ............................ GAAGCGTCTCAAGGCGCGCCTGCTGCGGGAAC 32076 28 100.0 32 ............................ GACGCAGACAGGCGCTGCGCCGCAAGAACCAC 32136 28 100.0 32 ............................ ATGGTCGCCAGGACGCCGCCGAACGCTTCAAG 32196 28 100.0 32 ............................ CGAGACGAAGCCGAGGCACGTGCCAGAGTAGC 32256 28 100.0 32 ............................ TAGGCAGCAAAACTGTTACTAACAGGGACACT 32316 28 100.0 32 ............................ TGCAGATGCGCGCGACGAATATCGGACGTGTC 32376 28 100.0 32 ............................ AAACATGCGGGGATCAGCACGGCCATCGGTTC 32436 28 100.0 32 ............................ GCGTTTTGCGAGCCTTCGTGTTTCGACGGATA 32496 28 100.0 32 ............................ CGTAGCCGGGAACTCAGCCAACTGTGCTTGCA 32556 28 100.0 32 ............................ TCCCGCCGGTCTTTTATGGGGATAGGGCAGGG 32616 28 100.0 32 ............................ TATGCCGGTGATCGGGAGAAGGCACCCGTTAC 32676 28 100.0 32 ............................ ATGATCATCAACAAGGTGCTAGCACCCAAAGC 32736 28 100.0 32 ............................ GACCACTGGATCTCGTTTAGGTCTACCGTCCC 32796 28 100.0 32 ............................ TCGAAGTAGGCATAAAGCACGTTGGGCAGCCG 32856 28 100.0 32 ............................ CAGACAAGCCAGACGCCGACCCACTGATAGTC 32916 28 100.0 32 ............................ CGTCGTTTCGCGTCGTCCACCGCAGCCAAGGT 32976 28 100.0 32 ............................ ACCAACGACGGGTGTCGCGCGCACCTGGGTAG 33036 28 100.0 32 ............................ ACCTACGAGCCCCAGCCGTATGCAGAGGTTTC 33096 28 100.0 32 ............................ CATTAGGCTGCACAGTGTCCAGATCAATCAGT 33156 28 100.0 32 ............................ AGCCGCACCCTTGCAGACTGTACTCTCTGCAT 33216 28 100.0 32 ............................ TCCACGTCCTCTTGAACAACATGTTCAGGGAG 33276 28 100.0 32 ............................ TGCAGCAGGGGGAGGAACTTCCGTATCAAGAC 33336 28 100.0 32 ............................ TGTAGGAGCAGACGGGGACAATACGCAAGCAG 33396 28 100.0 32 ............................ ATTGCATACAAAGACGGCATCATCGCCTCGGA 33456 28 100.0 32 ............................ TTTGCGCCACACCGAAACCGAATTCCGCGACA 33516 28 100.0 32 ............................ TAAGCAGCGCGTTAAGAATACATTCGTGACCT 33576 28 100.0 32 ............................ TAGATGCCCTGATTGCAGAAGTCAGGACCTCT 33636 28 100.0 32 ............................ TCTATGGGGAAATCATTTTCGAAAAGTACATC 33696 28 100.0 32 ............................ TCCCAGGGCAGTCGGTGTCGCACCTTGCTTCG 33756 28 100.0 32 ............................ GTGTCGGGATCTTCCTCAAATCTTGCAGGAGA 33816 28 100.0 32 ............................ TACTGCCACAAGAACCCCGGGATCGAGGATCT 33876 28 96.4 32 ..........................C. GGGATGTCCGGATGCTGGCAGTGACGCGTTGT 33936 28 100.0 32 ............................ ACATCAAAGGCTGCTACTGAAGCTCTGGATGA 33996 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 58 28 99.9 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : TTGCAGATGTTGATGGCGAGACCCTGGCTGCACGGGATGCTCGATCACCTGGCGGTATCGGCCATTCTCGCTGCCCCTGCCGACACCCAACATCGGCACGTCACCAGGGTGCAGGCCAAGAGCAGTCCCTCGCGCCTGCGCCGTCGTGCCATGCGCCGTCATGGGATCGATGCAGAGACAGCCGCCCAACGCATCCCGGATGCGGCAGCCGAACAGCTGCCACTGCCGTTCGTCGTACTGGGCAGCCGCAGCACGGGACAGGCGTCATTCCCGCTGTTCATCCGTCACGGCCCCCTGCTATCGGAGCCGACGAACGGCAGCTTCAACAGCTATGGCCTGAGCCAGGAAGCGACCGTGCCCTGGTTTTGACCCTTTTTCCCGGACAGAACAAAGGCTGCTTTAGAATCAACCACTTGGCAGGCACCTTGTTTCAAAGGGTGCCTGCCCTGTTTTGTCGGTATTTCTTTTATTTATCAATGGATTGATGAAGATCTGATCTT # Right flank : AATTCAAGGATGGCCATACGGGTTGGATTGACGTTTGATACGCCCAGGGTTCCGTAGACACTCAAGACCCTCGTTGCGCGTAGCGCCGTTCAAACTCTACAGGGGACAGGTCGCCAGTTGAACCGTGGCGGCGGTTGGGGTTGTAGAACATCTCGATGTAGTCGAATACCTCGGCGCGAGCGGCGTCCTTGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //