Array 1 11798-8795 **** Predicted by CRISPRDetect 2.4 *** >NZ_BHVO01000118.1 Microcystis aeruginosa NIES-2519 contig_118, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =================================================== ================== 11797 35 100.0 40 ................................... GTTACTGTTTTTAAAATACAGTAACCATGCGCCGTTGAAC 11722 35 100.0 41 ................................... CCTTGTCCAGCAGATGCTGCGCGACTTCGGTGTACAAGTTT 11646 35 100.0 39 ................................... GCACCGTTAGAAAGAACAGAAAAGCGAGCTTTTCAGACA 11572 35 100.0 43 ................................... ACCATAATTTTTACCAACCCATTTTGGTTGGTTTTACAAAAAT 11494 35 100.0 45 ................................... CCTATTTAGTTAAAAACCATATACAAAATTTTGTATATGGTTTTT 11414 35 100.0 41 ................................... CTTTGGTTACGTGAATACGGAAGCAGGACCCATCGTTAAAG 11338 35 100.0 39 ................................... TACGCGTTAACATTTGGTCCTCACGGAGCAACGAAATGT 11264 35 100.0 37 ................................... TTTTTTACCAACCCGTTGCGGTTGGTTTTAGATTAAT 11192 35 100.0 41 ................................... ATTATAGCCCACACAACCCATAGGGTTATGTTTGCTCCTAG 11116 35 100.0 38 ................................... GTTTGAAGTTCTTCCAATCCATCCATCAAAAGAGGGTT 11043 35 100.0 37 ................................... TTCAGCAACCTGTTCAGGAGCAAGCTTGCCGTTTTTG 10971 35 100.0 37 ................................... TCCAGTTCCAAAAATTTATGCAAACGTTGCATAACTT 10899 35 100.0 33 ................................... TTCAGCGTTTTTTGTAATGTTCCAAAATCGCTT 10831 35 100.0 39 ................................... GAACCGCAATCGATTGCCCTCCAGCGCTCTTAGGAATGG 10757 35 100.0 35 ................................... TTCATCCAAGGCGGCCATGAGGGCATCCTTGAGGT 10687 35 100.0 51 ................................... GATGAGATGTTGCTCTTGCTCGGTGACCATCAGGGTGATGGTCATTTTTAT 10601 35 100.0 44 ................................... TTTTCCTTGTAAACAAAAGCGGGTTCCTACCGGGGGTAGGAAAG 10522 35 100.0 37 ................................... GCAGACTTGCAAAATACCGACGCGAAACTTCCATCGA 10450 35 100.0 35 ................................... GGCAGGCCTGATACCACGAATGGTCGTAATCGTCT 10380 35 100.0 44 ................................... GATATAGATGCCCTGGACCTGGAGTGCGGGATCGATTTTACCTT 10301 35 100.0 40 ................................... TCGGTAGCACTAGCACCAAGGGATGCAAAAAAAAACTAAG 10226 35 100.0 35 ................................... ATGAGAAAATGACAGTCATGACGGGCTTTGACCAA 10156 35 100.0 39 ................................... CTTTTTGTGAGCCTCGTGGCTGCGGGGTACAGCTCAAGT 10082 35 100.0 41 ................................... GATGTCTAAGACTGTAAACATAGTAAAGAAAGTTGGGTAAT 10006 35 100.0 37 ................................... TAAGCGACCTAGCGTGCGAACAAGTAGATTATTCCGT 9934 35 100.0 37 ................................... CAAAAGTTCTCCAACCTTTGCAACGGTATCATCTCCA 9862 35 100.0 39 ................................... TCTTTTGCTGTTGCATTAGACTTTAGTACCCCTGCCCAT 9788 35 100.0 38 ................................... GTCCGGTGACGTCAGTACATCGAACATTGCCAGCACAA 9715 35 100.0 37 ................................... ATCACAAATTCGTACCCAGCGATGTCTATTGTTATGA 9643 35 100.0 37 ................................... CTAAAACCAGCCGATACCACCCAGAACAGCAAGAATC 9571 35 100.0 42 ................................... CCCAGAACAGCAAGAATCAATACAGTAACTGCACTGATTAAG 9494 35 100.0 37 ................................... CTCTAAATTATAGAGGAGGCTAGTTTCGTTGGAGGAT 9422 35 100.0 37 ................................... AGGCTGTTCGCAAGCACCAAGGGGTGCAAAAACTAAG 9350 35 100.0 39 ................................... TTTTGGTCTCCATGGTCGCCATGAATATATCCAGTGTGC 9276 35 100.0 34 ................................... GATAGATCCTGGGAAGATAAACAGTGACAACATA 9207 35 100.0 37 ................................... GCGATAACTACGATGATCGTTCCTGTATAAAATACAT 9135 35 100.0 43 ................................... GTCAGGTTGGTGTGTATTTTTTCCCATGAGGTCTCCCCCCCGT 9057 35 100.0 40 ................................... AGTATCCTCTAAGGCAAGAAGGACACTTTGGACTATGACA 8982 35 100.0 42 ................................... AAATTTGCTTATATCAAGCTGATCCAACGCGCTTTCTTCAAG 8905 35 100.0 42 ................................... CGAGGGTAAACTCTCCCAACTCTTGCTCTGGGAGGTCTTGGT 8828 34 82.9 0 ...........................G-..TCTG | ========== ====== ====== ====== =================================== =================================================== ================== 41 35 99.6 39 CTTTTAACTTCTTAGCAAGTTTAATTAATGGAAAC # Left flank : TATCTGAAGAAAAATCGGAGTGCTGATGCGAACACCGAAAGGATGATGAGAGATCAACCCTGAGCAACAAATACAGAGCTACCAGAGTCTGCTGCTATTAAGGTAAAGCAACTAAAATATCGGGAGCATCTCATTTATGCAAGTGAGTAATTATACTTGTCCTAACACTGATTTCTAGCAAGGCTTTCAAAATAGCTTGACATAAAGATTTAGGGGTTATAAAGGTGAGATGCTCCCGATCGCATAGGCATTAACGTGGAACAAATTCTATTGTTTTATGCCGATGGAATGGGGGGGTTCTCAACATTTTTCGCGGGTTAGACACAATGCCTGAAAATCTAGAGTTTTCGTTGAGGTGCGTCGATGCCTTGGCCAGCAAGACTTTGAGCCTTATGACTGAGGTAACTATTGAGAATTATTATTAATAATGTCTATGCTTTTCAATATCCCACGAAAAATTGCTGTACAATCCTTATACAGCCTAGTTTTGCCAAGCTAGT # Right flank : CGGAAAAAGTAGGGGCGAAGCATTCGGGCAATAACCTATCGGTGAAACCGGAGATTTTCTATCCGAATGCTTCGCCCCTACAGGACGCGGGCCGATGAAGACGCCAGGTTTTGAAGCACGATTCTCTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGAAAAAGTAGGGGCGAAGCATTCGGGCAATAACCTATCGGTGAAACCGGAGATTTTCTATCCGAATGCTTCGCCCCTACAGGACGCGGGCCGATGAAGACGCCAGGTTTTGAAGCACGATTCTCTCAAAATCTTGCACCTGTGGGAGCAAGAAAAGCCACAAAACCCTTACCATGCCTACATTTCACATTTATTCAGCCAGCCCTAATTAATGGAAACGTTTTTGCTAACCAATTGTTAGCTTTAGGAACCCTCCAGACTTTTAACTTCTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAACTTCTTAGCAAGTTTAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 3267-3611 **** Predicted by CRISPRDetect 2.4 *** >NZ_BHVO01000163.1 Microcystis aeruginosa NIES-2519 contig_163, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ============================================ ================== 3267 34 82.4 44 ...A.G.A....AT....T............... CCTAAAAAAGTAGGGCTAATTCATGAATTAGCCCTACCCTTATC AA,A,C [3274,3284,3287] 3349 34 100.0 39 .................................. ACGCAATCGCCTCGGGGTTCGTAATGACCGGAAACCCCA 3422 34 100.0 44 .................................. GCAATTCTACCCATTCTAACCAAGTGCCTTTGAAATTTTCGCAA 3500 34 97.1 44 ............A..................... ACTAAAAAAGTAGGGCTAATTCATGAATTAGCCCTACCCTTATC 3578 34 97.1 0 ...............................A.. | ========== ====== ====== ====== ================================== ============================================ ================== 5 34 95.3 43 CCTTACCTATTAGGTCAAATAGGATTAGTTGGAA # Left flank : TGGCTGTCATTGGCAATGGGGGGATAAAAGTTCTTTAATCAACGATAATAAAGTCAGAGATTTAACTCATGTTCATCCCTTTATCAAAGATGTTCGCACTATTGCTAAACAATGGATGTACTTACAAGAAAATATCCCCATAACTCCCGATAATAGTGCTAACTGGCGAGAAAGTTGGCATACTAAAAATGTCGAGGTTTGGGGAAGAATTGCCGAAGATAAAGATGATTCCCTAGCCATAAAATGGCTTCACAAAGCCTATCAAAAACTGGATAATTTAAGTATCTATAAAACCTCGGTGACAGGAAGTATCGATCAAGTTGGTCGTCTTTGGCATCGAATGTATCCCAAAAATAATCATCAATACTTAGAATTATTAACAATTTTTCCTGATGACTCTGATGATTGTGCTTATTTTCTAGGTTTTCTAGACGAGAATAATGGTCAAGAGGGAAAATTTCAAAAACTTTGGCCGAAATAATCCCGTTTATGGTTAAGTA # Right flank : AAACAGAAAAAGGGTTTCTAAAAGAAACCCTTTTTCTAATAAATTGTGTCAAATATATCTTGACAAAAATCGATAAAAATGCTATGACCCAACGGCAATCTTCGCTTTATTGCATGAGTAGAAAACGGGTTTCTTCGAGAAACCCGTTTTTTGCGATCGCCAGTCAAGAAAAAACCCGATAATTCAACCTATTCCCTGGGATCAAAATCCGGCAGCGTCCCCAACTTGCGAATGGTTACTTTAACATCCATAGACAAAAAGTCATCAGCATCACCAAACCAAGAACCAGAAAGAGGTATGATTTGACCGGGATGACGAGCGATCGCCACTCGAATTAAATCAAAGCCGGCGGTAATTTGATTAGTCGGATCATAATTACGCCAACCGGCCCCCGGTAGATAAACCTGTAACCAAGCATGGGTAGCACCAGAGCCAGTCATCCCCACTTCACCACCGTCGAGGGCAGCATCGTAGAGATAGCCACTGACAAAACGACAGGC # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTACCTATTAGGTCAAATAGGATTAGTTGGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.90,-4.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 1314-1144 **** Predicted by CRISPRDetect 2.4 *** >NZ_BHVO01000184.1 Microcystis aeruginosa NIES-2519 contig_184, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =============================================== ================== 1313 26 96.2 47 ..T....................... ACTATGAATCCATCGGCTGACGAATCTTACTGGTTAGTTTCCATTCA 1240 26 100.0 45 .......................... CCGTTCAACCCAGACGCGTACAGCGAAATATGATGTTTCGATTTC 1169 26 96.2 0 .............G............ | ========== ====== ====== ====== ========================== =============================================== ================== 3 26 97.5 46 ACGGATTTCTAAGCGCGAGTAGAGAG # Left flank : TAACTGTCAAAATCGTAACCTCCCTGTAATCCCAAGCTCACCACCGTCATGGGTGGTACATCCTCAATCCGAATATTATCGGCCACCTCTTTCGGGTAAGTGTCGGTGTCGCGGTAGAGAAAGGAAACTTCGGCCTCTCCCGATGTCGCTCCCGTGTCTGCGGGGTAACGGGTTTCAACGGGTGCGGTCATCGAGATCTCGTTGGAACTGATGTGTTGGTACAGGGGATAAAACGACCGGTTCGCCGCCTCGGAAAGTTGACCCCGATAGCGGTAAGTAGCGGCGCGATAGGCGGGATAGTTCTTCACCTCGATCCGTCCGTTCGGGGTCGGGGTCGGAAATCCTGCGGGTAGGGGAGCGCTAGAAGCTTGATAGACCCCGATCACTAGAGCGGTTAGGGCGATGAAGCCGAGCGGTATCAATAGGTAAGGTAGTTTCATGGAGAATCGGGCGCGATGACCTCTCTATTGTGGGACGAGTTGACTTCCGTTGACCGCTCA # Right flank : TTCCCATATTGACTTTGTTCTTGAGTTATTAGCACTACTTCTTCAGTGTTTTCTCTGGAGTAACTGTAACATCTCAATCTATAATAATAATTCCTTTTTGGGGAATTGGTAGGAATATATGTATACAAGGTTGGTTCGCTCCAGACTGAGCAATAAGCCAAGGATGAGTTACATAAGTTTGCTGGTCACGGGATTGTAAGGGGTCAAGGTCAAAATAATGCTGACGTTTGCCATTGAAATCTATCCAGTACACCTTAACAGAAGAAGAACTTCTATTAATCACCTGAATATAAGTTGATACATTACTATTAAGCGAACGTAACTCACTTTCTACTCTGCAACTTCTTGGACGTAAGATTTCTGCACTGGTTTGACTCTCAGCCGAATGAATAACATAAATTCCATATTATCAAGCTCAATCCTGTAATTTTCAACCATTTTAATAGCATGGGCTTTTTAGGGTTAATTGTCTTTTTTCGTGATTATGACATAATGAAGGC # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACGGATTTCTAAGCGCGAGTAGAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 11786-11307 **** Predicted by CRISPRDetect 2.4 *** >NZ_BHVO01000088.1 Microcystis aeruginosa NIES-2519 contig_88, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 11785 36 97.2 39 ............C....................... GGCAACTAATAATACTCAATAAAACGCAGCAGTATTGTC 11710 36 100.0 42 .................................... CTAAAATTATAGGGTAAGGTCTAAGACGATTCTGTTACAAAT 11632 36 94.4 32 .......................CT........... GTAGGGTTAATTCATGAATTAACCCTACAAAT 11564 36 100.0 37 .................................... GTTCATTAAGAAAAAACACAAACATATTAGGAGTACA 11491 36 97.2 37 ........................T........... GAAAAGCCTCTAAATACCGGTTCGCCCTCGACCTTAT 11418 36 86.1 39 C...........C.............TA..C..... GTCGGGCAGTTGAAAACTTGAAGTCGGGAGAATCCATTT 11343 36 83.3 0 ............C........T..T.A.TA...... | C [11321] ========== ====== ====== ====== ==================================== ========================================== ================== 7 36 94.0 38 GTTTCCATTCAATTAATTTCTAAGCGCGAGTAGAGA # Left flank : GACGGCCGCAAGGAGCCTAATACAGTTCAACTGTAACAAAACTCGCTCGTTTCTTACCTAGACCTTTGCCAGTCCGATAAGTGTCTTTCAGTAAACTGCCTCGACCCGCTGCGAGCGATTGTCTGATAGTTTCTTCCGCCAAATAATCCTAAAAGTGTCGCCCAGTAAGCATTTTACTATAGCTTTTTTCAGTCTGCTGAGGTACAAAATTTCTGGGTTTTAGGCAAAGGGGAAGAAAAATAGCTGTACCTCACTAGCTTAGGAAACGCTATATATAAGTACCTAAGCAAAATTAATTACACATCCAAATCGTCAGCAGTTACTCCGTCAGCTTTTTGCTGTGATCAGTAAACAGTGAACTAAAAACTCAAATCTGATCCCGTCTCCTGTCTCCTGTCTCCTGTCTCGACTGGGAAATTAATTTTGCACGACTACTTATTTAGGGTTTCCGGCAAAAAGTTTAAAGAAGATTTAATCGCACTGGTGGGAGTCGAGATTTT # Right flank : TGGGGTTAATGTAACATTACTATAAATATCTTGTCAAGTTTCTATTCAATCATCCTATAAAGTCGCCCTAAAAGGGCGAGGCTTTAAACCCAATTTTTCGGTAAATCAGCCATATAAACCGCCAAAATCTCCAGACTGTGGTAGATCGAGGGATTTTACCAGAAACCGAGGTTGTCTGCTCCCAACACTATCCAAAGCTAATAATAATCATATAAAAAAATCTATACCACCAGAAACTTAGACAGGATCAGCTTTTGAAGCTTTTTAAAAAAAATCTTCAAAATATCGTGTTATCTCTAGCGGTTCCTAGGGCATATTGAATATAGTGGGAACATCGGTCAGCAAGGAGTTGAGGCGTTTATGGCCCTGGGATACTGGCAAGCGAAAATCTGGGGATTACTACACGATCCCGTCTTCAAGGCCCTACATAGCAACTCAGGACGCGGTGATAACAGCTTCTGGAGAGATTTAGAAGTAATGAAGTTGTGGGGAAAACATAA # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTAATTTCTAAGCGCGAGTAGAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //