Array 1 1916547-1917505 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134474.1 Kurthia zopfii strain NCTC404 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1916547 32 100.0 34 ................................ ATCTTTCGCGTATTCAACAGCGAATTTAACACCA 1916613 32 100.0 33 ................................ TGCTGAATCATTGCTAATCCCGCATAATGGATA 1916678 32 100.0 37 ................................ AGAGAAAACGACTTATCATTTGTTGCAACTCGACACC 1916747 32 100.0 33 ................................ AGCTAGTTCTTCTGGTGTTTCTACGATTTCGAA 1916812 32 100.0 34 ................................ ACACAACGGATAACACTAACAAGGGTGCAGATGC 1916878 32 100.0 34 ................................ AGCGAGTGATTTAAGTAGAACTACTTTAGGGAAA 1916944 32 100.0 35 ................................ AGAAGGACTTTATGAATTCCCAACAGTAAAAGATG 1917011 32 100.0 34 ................................ ACACAACGGATAACACTAACAAGGGTGCAGATGC 1917077 32 100.0 34 ................................ AGCGAGTGATTTAAGTAGAACTACTTTAGGGAAA 1917143 32 100.0 35 ................................ AGAAGGACTTTATGAATTCCCAACAGTAAAAGATG 1917210 32 100.0 34 ................................ ATACCTACGGATTTTGTTGGATCAGCAGATTTTG 1917276 32 100.0 34 ................................ TATGACTACTAAAAACAAACCAATTGAGAATTTT 1917342 32 100.0 34 ................................ ATTTAACATAGGTTGATTACTTTCAAGATATTCT 1917408 32 100.0 34 ................................ GGTGGACATAAGGTTTATATCGAGGATAAATTAT 1917474 32 96.9 0 ...............................A | ========== ====== ====== ====== ================================ ===================================== ================== 15 32 99.8 34 GTCTCACTCTATATGAGTGAGTGGATTGAAAT # Left flank : TAAGAAAAGTTGTTTTAACTTTCAGAAATAACGAATGCTTTCCGCCGACAAGTGCCGCACTATTTATTTCCACTATGTGTAGAAATAAAGGATTGCTTCACACTTGTTTTTCGGCAGGAGTCCTCGTTATTTCTTTTAATATTATAGTTTGTGAAAAAGTATAGTTGCTTCAATTCCTTGTCAATTAAATAAATTGATGAGAAAGTTGGGACATCGAACGCTATTATCATGCGAGAAATATAATTAGGATCGATGAATCGAAAAGTGATCTAGACGCAAATTTTTATTTAACAAGTCATTTGTGCGAACCATAAGCTCACATAAAATCCCTAGGAGGTTCGCGCAAATAAAAAGGCTCTTTTTATTCAAAAGAGCCTTTTTGCAAACTTAAATTAACTTTCATTTTCCTTAAAAACCTTTTTTAGTAAAAATAAGGTCGTTTATTTGTGGAAAAATGGGTTATTAATGTATAATATAGCTATTAATAACACTTATTTGCA # Right flank : AATATTATTGTATTTCCAATGGAACATGAGCTACACACTTATATTGAGTGTGTAGCTTTTTTATATGGTAAGCCCGAAATATAAAAAATAGCGCACCTTTACGGTACGCACGACGAATGACTAGCTAACTGAATTTTTTTCAGATAGCTGGCTATTTTGCACATGTGGCTTGAATATTTTCTGACCAAGGCAGGTAATTATGTAAAATTTCAGGTTGCTGATGAAACGGTAAATTTGGTAAATCAGTCATCAGCTTTACCAGGTACTGATAGAAATCAATCCCGTTTGCTTTGGCCGTTTCAGCCAAACTTAAACAAATGGCATTCGCTTTTGCACCTGCTTCACTCACAGAGAAGAGCCAATTTTTGCGACCAATGACATTTGGTCGAATCGCATTTTCAGCTGGATTATTATCAATGGCAACGTTCCCGTTTTCAAGAAACACCTTTAACTCTTCAGCTCGACTTAGTGTATATTCGGTTGCTTTCGCAATGGCATTT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTATATGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.64%AT] # Reference repeat match prediction: F [matched GTCTCACTCTATTTGAGTGAGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1925459-1926419 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134474.1 Kurthia zopfii strain NCTC404 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1925459 32 100.0 36 ................................ CTTTGGTGGTGTACCGCCTTGTGGTGGGGTGCCACC 1925527 32 100.0 34 ................................ TTGAAAATTGTAACGCGAATGAAGTCCGCTTCTT 1925593 32 100.0 35 ................................ TAACGAACCATCTTCCCAGCTACCGCTACCTGTTG 1925660 32 100.0 35 ................................ TCTACCGCCTCCATAAAGATGTCCGGCAAGCTGAC 1925727 32 100.0 33 ................................ CATAAAAATGCTGAAATAACACCTAAGAGCGCC 1925792 32 100.0 35 ................................ GGCAATAGCTCGCCAATATACTCACTTAGTGCCTC 1925859 32 100.0 35 ................................ CTTGCATACGCGGTCTGCCTCAATCATCGTCACTT 1925926 32 100.0 34 ................................ TAAAGACATGTCCTCACATTGCTTAGTAACTCAG 1925992 32 100.0 35 ................................ AATATCCCCGAATCATTGCTGAATAGTTCGATTGC 1926059 32 100.0 34 ................................ AATGCGACTATATTGTATTAGATACTCAAAACGT 1926125 32 100.0 33 ................................ ACGAATAGATTGCAATACTAATATGAAGTCAAA 1926190 32 100.0 34 ................................ ATAGGCGCGTTCTGTTTCTTCGTAAGATGTACTG 1926256 32 100.0 34 ................................ CCAGTTATCGTTTAGCGCCTTTTGAATATTAAAC 1926322 32 100.0 34 ................................ TTTATTACCTGAACCGCTTGTCTACAAATTAGCT 1926388 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 15 32 100.0 34 GTCTCACTCTACATGAGTGAGTGGATTGAAAT # Left flank : AAGCTTTGCGAAACAAACAGGAGTTCAAAGTGAAGATTTAGAAGTATTTTGGAAAGCGTTAATAAATATGTGGGATTTAGATCGATCAGCTGCTCGTGGTCAAATGGCAACTCGAGCATTGTATGTATTTGAACATGATAGTGAATACGGAAATGCGCCAGCACATGTTTTATTCGATAAGATTTCAATTACAAAAAAGCCAGAAGTATTAGTGACGCGGAAATTTTCAGACTATGATATTAATATTAAATCTTTCGATATTGATGGAATTAAAATGCATAATTTAGTTGACTATTAATTTGTGCGAACCATAAGCTCACATAAAATCCCTAGGAGGTTCGCGCAAATAAAAAGGCTCTTTTTATTCAAAAGAGCCTTTTTGCAAACTTAAATTAACTTTAATTTTCCTTAAAAACCTTTGTTAGTAAAAATAAGGTCGTTTATTTGTGAAAAAATAGGTTATTCATATATAATATAGCTATTAATAACGCTTATTTGCA # Right flank : TTAATACTTGGAATGGCAACAGTAAATTGAACAAAAATTATATGGGCTGTAATTTAAATTCCATGGGCGTTAAATAACCCAAAGTTCCATGAATACGGATGTTGTTAAACCAATGAACATAATCATTCAACTCAATCTCCAATTGGTCTACAGTAGAAAAGTTAGCCTGGTTTGCAAATTCTGTTTTAAATACTTTAAATGTTGCTTCTGCTACAGCATTATCGTAAGGACACCCCTTCATACTAAGCGAACGTTGGATATTAAATGTTTCAAGTGCATCGTCAATCAACTTGTTATCAAATTCTTTTCCTCGATCCGTATGAAACATTTGTATATTATTCAAATTTGCAGAAATGCTTGCTAATGCTTTATAGACAAGACTTGCAGTCTTGCTTTCTCCAACACTATGGCCTATGATTTCACGATTAAAAAGGTCTACCAATAAACATACATAATGCCATTTCCCACTGACACGAACATATGTTAAATCGCTGACAACG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTACATGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: F [matched GTCTCACTCTATTTGAGTGAGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.00,-3.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //