Array 1 1043441-1035970 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046565.1 Methylococcus geothermalis strain IM1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1043440 28 100.0 32 ............................ GTTATTGGCATAATTCCAGTCGTCGCTGTACG 1043380 28 100.0 32 ............................ TTGCCACCGCAAGGGAAGCGCAGACCGTCCAC 1043320 28 100.0 32 ............................ AAGGCATGTCGGCAGAGCGATTCAGGGATATC 1043260 28 100.0 32 ............................ TTTTTGCCGATCATCTCCCACGCTGACGACAG 1043200 28 100.0 32 ............................ TACGGGCACCGGTCTAACAGGGGCTGGCGCTG 1043140 28 100.0 32 ............................ TGAGAGCTGGTCGAGCCCTGATTCCCCAGCAC 1043080 28 100.0 32 ............................ GATCACAAGCAGCACATACCCGGATGCAATGA 1043020 28 100.0 32 ............................ ATGATGTAGACCGCCAGCGTGGCCGGCCTTAC 1042960 28 100.0 32 ............................ ACGATATGGATTGCAGGCCGGCGATGATCATG 1042900 28 100.0 32 ............................ AATAAATCCGCACAAAGCCCTGAGCGCCATTG 1042840 28 100.0 32 ............................ AAATGCTAGGCAAGGCAGATTGTTGCCGGAAT 1042780 28 100.0 33 ............................ AGGACAACAGACAGCAGATAAAACCGATCTGCC 1042719 28 100.0 32 ............................ TGGTCGAGGAGTTCACCAACGAATACCTGTTT 1042659 28 100.0 32 ............................ AGTGCGCAGGATATCGCGCTTGGCCAGCAAAG 1042599 28 100.0 32 ............................ AGCCGCTGCACGCGGTCAACCTTGCTGTGGCC 1042539 28 100.0 32 ............................ TCGAAGTACTCGATGTCCGACCGCATGCCATA 1042479 28 100.0 32 ............................ ACAACGGCGGCGTGTGTGCCTGTTCGAGGTCT 1042419 28 100.0 32 ............................ TGATATGTCCAGGCTCAACAGGTACCGCATCA 1042359 28 100.0 32 ............................ GACACGGCGGAGGAGTCCAGGCCGCCCGAGTC 1042299 28 100.0 32 ............................ ACTGCTCACGGCTGATCCCGGCAATCGCGCTC 1042239 28 100.0 32 ............................ ACTCGGAATATTGGCAAACCGCACGATGGCGC 1042179 28 100.0 32 ............................ CAACAAATAGGTCATCGTTTGCCTGTCCTCAT 1042119 28 100.0 32 ............................ ACAAAAAGCGACATGGCGATCAAAAACACAAA 1042059 28 100.0 32 ............................ ACTGCTCTTTGCTGATCCCGGCAATCGCGCTC 1041999 28 100.0 32 ............................ GAATGTATCCAGCCCCTGACCATCCTTGTAAC 1041939 28 100.0 32 ............................ TAATGGCGGCACCTTCGACGGTACGACTAACT 1041879 28 100.0 32 ............................ TGGATTTGTTCTGGATGGCTAGCTTCTTGGTT 1041819 28 100.0 32 ............................ ACTACGAACAGCTGATCGCGGGTATACCACGC 1041759 28 100.0 32 ............................ AAACAGGCTCCGGTAAGTCCGTGATGCTTCAA 1041699 28 100.0 32 ............................ ATAGCGTATGCGGCTTAACGTGCCTCTGAAGC 1041639 28 100.0 33 ............................ AGTAAAAAGTCTAGCTGCTTATCGGTGGGCCGA 1041578 28 100.0 32 ............................ TACGACCGCGAAAAAGTGCTTGACAAGCATTG 1041518 28 100.0 32 ............................ TACTCATCGGGCCAGATCCACGAGTCATAAGA 1041458 28 100.0 32 ............................ ATCTAAAAAGTGCCGCGTTTTGAGTACCACGA 1041398 28 100.0 32 ............................ TCGCAAACGGCGAGCACTCGCGGCCGAGTTAT 1041338 28 100.0 32 ............................ AAAATCAGGGCGGGGTTAATTTCAACGCTGAT 1041278 28 100.0 32 ............................ GTCATAAAAGCCTATATCAAGTAATACACCTT 1041218 28 100.0 32 ............................ TTTTGTTTGATCCAACCCGGCCAAATATTTGA 1041158 28 100.0 32 ............................ TAGAACGCAGGAAGAAGCAGAGGAGGCCGGCT 1041098 28 100.0 32 ............................ GGGCCGCGGCTGGCGCATCATCGAGTCTTACG 1041038 28 100.0 32 ............................ AGACTTTGTTGAGATAGGGACGCAACCTTCCA 1040978 28 100.0 32 ............................ GCTCAGCGTGTTGCCCCCGGCCGCCATGACGG 1040918 28 100.0 32 ............................ AGCATGGCTGCCAGGCTGGATAGTTCCATCTT 1040858 28 100.0 32 ............................ ACGACCCGCCGCCAATGCCTGGCAGACTGGCA 1040798 28 100.0 32 ............................ CAACGCACACAAACCTTCAACAACCGCATCAT 1040738 28 100.0 32 ............................ TGTGGAAACACTTTCGCAATGATGCGGTTGTT 1040678 28 100.0 32 ............................ GAGTATCCAAGCCCAGGTCAATCAATACAGTT 1040618 28 100.0 32 ............................ GATCAGATCAAAAAGACCACGGATGCGTTGGA 1040558 28 100.0 32 ............................ CAAAGCGCGTGCACGCACGATTGAAAGAGGAG 1040498 28 100.0 32 ............................ GGGAGGTGGAGGCCTCGCCGGATGGGCATCTC 1040438 28 100.0 32 ............................ AGGAGTTTGCTGTGCCCACTTGCTATCGAGCA 1040378 28 100.0 32 ............................ AAGGAGCCCGTATGGCAGATCGCACCGGAGGA 1040318 28 100.0 32 ............................ GAGCAGCACGCAGCTCGTGATCCACGCTGCCA 1040258 28 100.0 32 ............................ ACTACGAGGGGCCGATCGTGGATATACCGCGC 1040198 28 100.0 32 ............................ ATCGAGTTCTGCCGGCTCCATGAGTTCGGTCA 1040138 28 100.0 32 ............................ GGGAAGTGGAGGCCTCGCCGGACGGGCATCTC 1040078 28 100.0 32 ............................ TAATGAGATGGGGTATAGCCCTAGCTTTGTTT 1040018 28 100.0 32 ............................ ATTGAGCGCTAGCCAGAATACAAACGCCGATA 1039958 28 100.0 32 ............................ AGGTACGTAATATCCTTAATAAGGCCGGATCC 1039898 28 100.0 32 ............................ TATGAGCGCTCCTGAGCCGTTTTTCCTACCTA 1039838 28 100.0 32 ............................ CTTTCCGGGGCGGGGTCAACTATCACTGCTAT 1039778 28 100.0 32 ............................ CAGAGATTGTGCCCGGCTGATTGTGCAGTGTA 1039718 28 100.0 32 ............................ TAGCAAAAGACGTGCCAGAAAAAAATAGGGCC 1039658 28 100.0 32 ............................ TGGTGGCGCGTCGGCTTGGCTGGCGCGCTGTC 1039598 28 100.0 32 ............................ TTCGCAGTCAGCTCGTGCCACGGCGCCGACTC 1039538 28 100.0 32 ............................ TGTTTGTTTGTGCCGGCCCGGTCGGCCGCGGC 1039478 28 100.0 32 ............................ AGCTGCCGCCACAAACTCGTAATCGTTCTTCC 1039418 28 100.0 32 ............................ ACATCGTTCGTTGGGTGCGATAATGCGCCCTA 1039358 28 100.0 32 ............................ TATCAATGCCCGCCCATTGACTGGAGTAGGAA 1039298 28 100.0 32 ............................ GCCAAGCCCTTGGTCTGCTCCAGCCCGGCCAG 1039238 28 100.0 32 ............................ TTACGATGAGGTCTGGTATCGGCTCTGTGCAA 1039178 28 100.0 32 ............................ AGCTCGAGACGATGTGAATGTGACGACCGACG 1039118 28 100.0 32 ............................ ATGTTCTGATCTGCGGTGCTTTCGTCGATACC 1039058 28 100.0 32 ............................ GCGCGCTGACGCTTGACTAAGCCGTCGACGGC 1038998 28 100.0 32 ............................ GGAGCCGGAGAACAAGTCGAACTCGGAGAGCA 1038938 28 100.0 32 ............................ TAAAATTGATAATATTCCTGATTCTTTTGTGC 1038878 28 100.0 32 ............................ ACGCTAAGCATGCTTTTGCTATTGGTTATCTT 1038818 28 100.0 32 ............................ TGGACTTCTCGTCCTCGAGGCCGCGCCTCGTC 1038758 28 100.0 32 ............................ GGCAGGCCGTGGGAAATGCACGAACAGGTTGC 1038698 28 100.0 32 ............................ ATCATCACAACCGCAGAGCGTGGCCAACTTCC 1038638 28 100.0 32 ............................ AGAACCGCCCGCAACATCCGCAGAAGATGACA 1038578 28 100.0 32 ............................ AACAGCGACCCCGAGGAAATTTACGGGGCTCT 1038518 28 100.0 32 ............................ GGCGCGAACGCCGGCGGGCAGGCAAACCTTGA 1038458 28 100.0 32 ............................ CGAGCAAAATAACGGCGACCGTCTGGGTAAAA 1038398 28 100.0 32 ............................ TTACCGGCGTACCACTGCGCTTTACATTGATC 1038338 28 100.0 32 ............................ GTTGATTGGGCGGCGCGAAGCGCCGCCATGAT 1038278 28 100.0 32 ............................ CGAAGCGGTCGAAGGCGAGGAAGGGCCGTTCG 1038218 28 100.0 32 ............................ AGAGCGATAAACGAAGAGGTCGCCATCGTGGA 1038158 28 100.0 32 ............................ TTGCCGCGCTGCTCGACACGGACGAGCTGTTG 1038098 28 100.0 32 ............................ TGAGCGAAGCCAGGCGCGAAGCTGAGTCGCCC 1038038 28 100.0 32 ............................ TAGTCGCAAGGCGTTATTGCCTTCTTGATTTT 1037978 28 100.0 32 ............................ TCGTCGCGGAGGTCATCGAGGGAGTAGGTGTC 1037918 28 100.0 32 ............................ GAAGAGGACCCCAAGGGCCGTATCTTCAGGAG 1037858 28 100.0 32 ............................ GCATCACGCCAGCCCCGATCGGCTCGCCCAGA 1037798 28 100.0 32 ............................ ATTTAGTTTTCTCCCTTCTCGTTGCTCGTACT 1037738 28 100.0 32 ............................ TGGAAGATCGAAGGCCTTCGGCAGCTCGAGGA 1037678 28 100.0 32 ............................ TTCGGGCTCCGCGATCTGCCGCAGGCCTTCGG 1037618 28 100.0 32 ............................ AAGTCGTGGTTCAGCGATGGCGTCATCATGCT 1037558 28 100.0 33 ............................ CAGACAATCCAGCACCGCCTCCAAGGTCGTCGT 1037497 28 100.0 32 ............................ TGTGGATGAATCTCCAGTGGGGATTTCGGACT 1037437 28 100.0 32 ............................ AATCAAGGAGGATACTGCGCCAATACCTTGCG 1037377 28 100.0 32 ............................ GGGAGTGCTTCGGGGGCGGCGATAGTGTCGTT 1037317 28 100.0 32 ............................ CAAAGATTCGACGTCTACTCCTCCGGTCGACT 1037257 28 100.0 32 ............................ CGGCGCGTTTGATATATCTGTGCTTGATCCTG 1037197 28 100.0 32 ............................ GAACGGGTCCTGCCCGGGAGTCAGGTCGACCG 1037137 28 100.0 32 ............................ TGCTCAGTTGCGGCATTGAGTTCTGCTCTGCG 1037077 28 100.0 32 ............................ TCGATGTGTCCGGCGAAGGCGAACGCATTGAG 1037017 28 100.0 32 ............................ ATCCGAAAAGGAGTGCGCAATCATGGCAACAC 1036957 28 100.0 32 ............................ CGGTCGTGTCGCGATATAGATCGAGCCTCAGA 1036897 28 100.0 31 ............................ ATAGCCTGCTCTTTGGTAATACCCTTGGGTA 1036838 28 100.0 32 ............................ GAGTGATGCTGTAGCGACTACGAGCGCTCCTG 1036778 28 100.0 32 ............................ GTCACATCCGACGGCACATGGACGGCATTGCG 1036718 28 100.0 32 ............................ ACCGGCAAACATAAATTGATGTTGCGAGGCGA 1036658 28 100.0 32 ............................ ATATCGTTACCGGCCGACCCGCCCAGCGTGTT 1036598 28 100.0 32 ............................ ATAAAACGGAGCACACCATTCCATACCGCTAC 1036538 28 100.0 32 ............................ TTCTCCGTTTGCGGTTTCGACGCGTTGGCGTT 1036478 28 100.0 32 ............................ GCCATGATTGGGGGGGGCGGTGACTACGTGTA 1036418 28 100.0 32 ............................ TAGAAAAAACCGGCGTCTACGGCTGGGCCAAC 1036358 28 100.0 32 ............................ GCTACGTGCGCCATGATCTACGGTCCGAGAGT 1036298 28 100.0 32 ............................ AAATACCTATCGCCTGGCAGCGCCCACGTTTT 1036238 28 100.0 32 ............................ ATCATCAATCTCGGCGTCGCGGTGTACGCGAT 1036178 28 100.0 33 ............................ GCCCAACTCAGGAGGCAACTATGAAACAAAGCA 1036117 28 100.0 32 ............................ TGCTGCCCCGGATCGAGATGCACGCCGAAGTA 1036057 28 100.0 32 ............................ AGGTCGAGCGGCTGGAGTATGAGGCCGTCGAT 1035997 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 125 28 100.0 32 CTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : GGAATTGGAAAGGCTCATGGCCCTGGACTGGTTGACGGGAATACGCGATCACACCGCGATCGGCGAAATCGCGGCGGTTCCGGCCGATGCCGTACAGCGGATCGTCAGGCGGGTCCAGGCCAAAAGCAACCCCGAGCGGCTCCGGCGCCGGCTGATCGCCCGCCGGGGTGTCAGCAACGAGCAAGCCGAACAGGCCATTCCCGACACCGCCGCCGAAAAGCTGGACCTGCCCTATGTCGTACTGGCGAGCCGAAGCACCGGCCAACAGTTCCGCCTGTTCATCGAGCATCTCCCGGTGCAGGAACAAGCTGTGAGCGGCACCTTCAGCGCCTACGGCCTGAGCGCCACGGCCACGGTACCCTGGTTCTGACCCTTTTTTCGCGCCGTACGAAACGGCTCTCCTAAATCAAATACTTGGCAACATCCCCAAAGTTTTGGTTTCGAGCCCGAATGTGCGGTATTTTCTTTAACAATCAGTCGACTAAAAGCTTTACTCTGTA # Right flank : GTTGACATCGAGCGCGACCTCGAACATGAACCGCCCCGGCTTTGGTGGAGGCTCCAACTCTTGAGAAGATGGAGCCATGAAGAAGTCAACGAAGTTTTCCCCTGAGGTCCGTGAGCGTGCTGTTCGCCTAGTGTTCGAGTGCCGCAACGAACATCCTTCACAATGGGCTGCCGTGGTTTCGATCGCAGGCAAGATGGGCTGCACGGCGCAGACGCTGCTGAGCTGGGTGCGACGTCATGAACGCGACACGGGTCAACGTGATGGCCTGACATCGGCAGAGCAGCAACGCATCAAGGAACTGGAGCGGGAAGTGAAAGAGCTGCGCAAAGCCAATGAGATCCTCCGGTTGGCCAGCGCTTTTTTCGCCCAGGCGGAGCTCGACCGCCGATTCAAGTCGTAAGGGAATTCGTGGATGTGCACCGGGATACCTTTGGGGTCGAGCCGATCTGCAAAGTCTTGCAGATCGCCCCGTCGGGCTATCGGCGTCACGCGGCACAGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1220899-1217202 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046565.1 Methylococcus geothermalis strain IM1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1220898 37 100.0 34 ..................................... ATCGTGGACGGCACGGGCTACGGGTATACCTACA 1220827 37 100.0 34 ..................................... CGGGAAATTCGCGGAACTCTATGCCGAACTGGGC 1220756 37 100.0 36 ..................................... TCTATCGACCCTCGGCCGGAACGATGGCGATGGCGG 1220683 37 100.0 37 ..................................... GAAGCGTTCAAGGCCAACCTGACCGACAGCGAATTTG 1220609 37 100.0 34 ..................................... TACCGCCAGTACGCCCATGATCCCGCCTACTATC 1220538 37 100.0 35 ..................................... ACACCGATGCCCTCTTGCGCCATCTGTTCGCAGAA 1220466 37 100.0 34 ..................................... AAACGACATCGCGGAGAACAAAGAATGAAGACAA 1220395 37 100.0 36 ..................................... CCGCCATCACATGCAGCATGCGGCAGGAATCGATGT 1220322 37 100.0 34 ..................................... TTCCGTGGCACCTTCGAACGCCTTCATCAGTGCG 1220251 37 100.0 35 ..................................... GCCTGCAATGCGGACAATGAGTTTGGGCACCGTCG 1220179 37 100.0 35 ..................................... GGACTATGCCAAGCGCGACCAGGACGGATTTGCCG 1220107 37 100.0 35 ..................................... TCCACCTGGTAGAGCTGGCCGGGCCTCCTCGATCG 1220035 37 100.0 35 ..................................... TTGTTCATCTGCGTTCATATGGATGACGTGATCGG 1219963 37 100.0 34 ..................................... ACAACCCAATCCGATTCCGCCGTGGGATTTTCGC 1219892 37 100.0 35 ..................................... CTCGATGAGGCAGAAGCGAGGATAAACGGTGCGCG 1219820 37 100.0 35 ..................................... GGTCAGGATGTGGAACAGCCCTCCCAGGCTGAACG 1219748 37 100.0 34 ..................................... AATCCGATACTCGCACCAGGCGCCATGCTTGGAG 1219677 37 100.0 34 ..................................... GGCGTCCAGCAGGGCTTCGCGCTCGTTGTAGGCG 1219606 37 100.0 36 ..................................... CTGAAGTTCGGGCAGCCATGCGATGGCGAATCATCC 1219533 37 100.0 34 ..................................... CGCTAAAACGTGCCCGACGTATCTCTCAGACATG 1219462 37 100.0 35 ..................................... GGTCAGGATGTGGAACAGCCCTCCCAGGCTGAACG 1219390 37 100.0 34 ..................................... AATCCGATACTCGCACCAGGCGCCATGCTTGGAG 1219319 37 100.0 34 ..................................... GGCGTCCAGCAGGGCTTCGCGCTCGTTGTAGGCG 1219248 37 100.0 36 ..................................... CTGAAGTTCGGGCAGCCATGCGATGGCGAATCATCC 1219175 37 100.0 34 ..................................... CGCTAAAACGTGCCCGACGTATCTCTCAGACATG 1219104 37 100.0 35 ..................................... AACGGTACGCCCTTCTCGGAGTTCCAGTTCCGAGG 1219032 37 100.0 35 ..................................... TGAAGATGCTCTCCCAGTACGCTCGGCGCGTGTCG 1218960 37 100.0 34 ..................................... GTAGTACTTGATGATCCTGCGTTCGAGCTGAGGA 1218889 37 100.0 36 ..................................... TGTGCGTAATTTGGTCGATAAAACGTTCGTGTCGAC 1218816 37 100.0 34 ..................................... GTAAAAATGGCTGTTATTAGATCGTTGCGTGAAT 1218745 37 100.0 34 ..................................... GTAAAAATGGCTGTTATTAGATCGTTGCGTGAAT 1218674 37 100.0 35 ..................................... AACCGTTTCAGGTGGTTGTAAATGGCGATGCACAT 1218602 37 100.0 36 ..................................... ATGCTAAAGAGTAGGCGTTTCAGCATGATGCTGCCC 1218529 37 100.0 34 ..................................... GGGGAAAGATAAGTCGCCGTATAAAAAGTTGGAC 1218458 37 100.0 35 ..................................... GGTTGATTGATTGCCCGCCGGATCAATGTAAAGCT 1218386 37 100.0 35 ..................................... GACACAGCGACCGGAGAAGGCGACGGCGAAGGTGC 1218314 37 100.0 34 ..................................... TTGAAATAGTATAAATAGGACACGTACCGCCATC 1218243 37 100.0 34 ..................................... TTGCGTGAGCCGGGCAAGTACCTGGCTGGTTCCT 1218172 37 100.0 35 ..................................... ACTGGTATGGTACTGGTAACACGTGTCCTGTGGGT 1218100 37 100.0 34 ..................................... GGTTGATTGATTGCCCGCCGGATCAATGTAAAGC 1218029 37 100.0 38 ..................................... AACGGCGTATAGTCAGTAGCCGCGAAAACATCAGTAGC 1217954 37 100.0 36 ..................................... GGCTCATGGGGCTGATGCTCAACCTGGTGGCGGTGG 1217881 37 100.0 34 ..................................... TTTACTACCTTCATTTCCATATCAACCCCAAGAC 1217810 37 100.0 35 ..................................... ACTATCGATGCTACTGCCGAGCAGGCCGATAGGCT 1217738 37 100.0 33 ..................................... CGCCAAAAACGGGACGTCGACCGGCTCGTCGTC 1217668 37 100.0 35 ..................................... GAGCGGCGGCGCATCAGGCTGGCAGATCAACAAGG 1217596 37 100.0 34 ..................................... CGAGGTTGCGCTCGACGTCAACGGCACCATCAAC 1217525 37 100.0 34 ..................................... ACCTATACCGATAACACCGGAGCCACCCAGAGCG 1217454 37 100.0 34 ..................................... GCGGGAAAATTGATTGCCGAAACGGCGATCAAAG 1217383 37 100.0 34 ..................................... ATCAATGACCGCGCCCCGCGGCTGGTATGGACGA 1217312 37 100.0 37 ..................................... CTGATGGTTCGCTTGCCTATCCGGACCCGGGATGGGA 1217238 37 94.6 0 ..........................C....A..... | ========== ====== ====== ====== ===================================== ====================================== ================== 52 37 99.9 35 GTATCTCCCGGCTCAATAGCCGGGAGTGGATTGAAAC # Left flank : TCTTCAGCGGTGAAGAAAACCCATGCTGGTACTCGTGTCCTATGACGTATCGACTGAAACTTCCGCAGGCCGGCGCCGGCTGCGACGGGTTGCGAAAATCTGCCTGAACCATGGACAACGCGTCCAAAAATCGGTTTTTGAATGCCGAGTCGACCAGGCCCAGCTCGAGACCCTCAAATTCCAGTTGCTCGACGAAATCAACGAGGCCGAAGACAACCTGAGGATCTACCGGATTCCCGAACCGCTGGGCAAACACGTGATGGAATTCGGCCGCTTCCGCGCCACCGACTTCGACGACACCCTCATCGTATGACCGCCGAATCGCGCGAACCTCGAGCGATGGGAAACACCCGGCAGGTTCGCGCACATGCCAACCCTCTGTTCTTTCTCACCTCTACCACCGCTTCCGCCCAACACAGCCAAGCATCTGACCGCTTTCTCCTGGACCTCGCGCTTTTTGCCAGAAAAATGACGATGTATCATGGAGTTGCCGAAAGGCT # Right flank : CGGCAACACGGGTTAGCTACCAACATAAATGAGGGTATCTTCAGTCTCAACAACCCAAATCAAGTCCCATCATCATTTAGTCTTAATGAACGTTGCGCTGAGCAATTCGCTGCCGGTGGCATCTTTCAATATCACGACGTCGCCAGGCCTCACGTCGGGTATCGTCTGCTCGGCGACTTCGGTCGCCGTATCCGGATCACATACACCGGACTTGATCTGCAGTATTCCGCGCCGATAGATTTCCTTGGCGGCGAAAACCGCCTGTTTCTTCTTGACCCGTTTGACGTCGAGGTCGCATTCGGCAAACGCGGTTCCATCGGAGTGCCGGAATTCCAGCAGGAAGTCATGGCGATTCTTCGCATCATCGGCTGTCGCGAGGCTCAAAGCCCCGTTCGGTATTTTGACGGTGAGGGAAGCCTCGATCTGGTCCTTCTTGGCGGACCACCAGGTTCGCTTCACCGTCAGCACGGCGCCATCCTGCTTCTGTTTGGCCAGGGTCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCTCCCGGCTCAATAGCCGGGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.30,-14.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 3 2377157-2378721 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046565.1 Methylococcus geothermalis strain IM1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 2377157 36 100.0 33 .................................... GACTCGATTTTGAAGTAAACAGTTATGTTTTTT 2377226 36 100.0 33 .................................... TCCAAAGCATTGATATTCCTCCAGTTTTACAAT 2377295 36 100.0 35 .................................... ATTGGTTGTCAGAGTAGTGATTGTCCGCTGCATAG 2377366 36 100.0 33 .................................... ATTCCCGCAGCTCGCGGGCCGAAAGCTCGATCT 2377435 36 100.0 34 .................................... CCCAGGGCGGCTGGCCTAGTCATTGGGCCGGGCC 2377505 36 100.0 34 .................................... AGTTTAAGCACCGGACGCGTAATCGTCGCGATGC 2377575 36 100.0 34 .................................... CAATTTTGACAATCCGCTTCAAACTCCGACTCCA 2377645 36 100.0 33 .................................... CTGCTATGTGCGCTCTATCAATACGCATAATTC 2377714 36 100.0 34 .................................... GGAAGGGTTCGCGCTCCCATGATACTGATACATC 2377784 36 100.0 33 .................................... ATGTCAGATTCGACAGTTTCAACGATATCGCCG 2377853 36 100.0 34 .................................... ATCTGCTCGTCCATGAGTTTCGCTTCCGGGAAGT 2377923 36 100.0 34 .................................... GTCTTTTTTGACGTGCTTCTGAAGCACTGGGTAA 2377993 36 100.0 33 .................................... CGTATGCAGAGCCGTAGCTATAATCGCCCCAAT 2378062 36 100.0 33 .................................... CAGGCAACGCTGCTCGATGTCGCCACAATCAGG 2378131 36 100.0 34 .................................... CTCAAAGATGCGGGCGACCTTACGGCATTCGGTC 2378201 36 100.0 32 .................................... GACAAAACAGAATCAACAGATTTAAAATGACG 2378269 36 100.0 34 .................................... GCACTTTTTCGCGGTCGTAGGGCGAAATTTCGGC 2378339 36 100.0 34 .................................... CCTTCAGACTCGGGCATCTTTGCATCTCCGGTGA 2378409 36 100.0 34 .................................... GGTGCGAATGGCTTGCAATAATTGATTCATGCCG 2378479 36 100.0 32 .................................... TCTCAATTCCATAGTCATCGCAATCTCCTCGA 2378547 36 100.0 33 .................................... CGAGCTTCAGTAATAGGCTTACCGGTTTTTTCA 2378616 36 97.2 34 ....C............................... TTGCTTAGTTTGCGGAGGCCGTCTACGATTAAAC 2378686 35 83.3 0 ..C...........T..G....-..A........C. | A [2378705] ========== ====== ====== ====== ==================================== =================================== ================== 23 36 99.2 34 GTAGTAATCGAGACCTGATGAAGAAGGGATTAAGAC # Left flank : TCGGCTGAACCATGGCCCACAACGCACCCCGGCTTCACCTCATCAGTTACGACATCGCCGATCCCCGGCGTCTGACCCGGCTCCATCGTTACCTCAGCGGCGTCGGCATGCCGCTGCAATATTCGGTCTTCGTGGTGGAACTCTCGCCGCGTAAGCTGGCTCGCGTGCTCAAAAGCATCGAAGACATCATCGACCCGCGCCGTGACGACGTCCGCGTCTATCCCTTCCCGCGCAACGGCGAACGCATCCGGATGGGCCGCCAGAGTTTTCCGGAAGGCGTATTCCTCATCGGCCAAGGCTGCGACCTCCTCTCCCTGGCCAAATGCTGAGTTTCCCCCTTGCCCGGCATGCCGGCCGATGGTTAACTACCCAAGACCCCCTCAGCCACCGCGAAACGGACCGAAGACGCGCCCCGCATGAGAGTCAGCTTTTCAAGCGCGCGATTTTTTGCCAACCCCCTTTACAACCCATTGACTCAAAAGGAGAAAAAAGACGAAGCA # Right flank : CATTCATGGCAGGGGCGGGTTTCAAACCTGCTCCTGCGATAGGTAGCAATCGAGACATGCCCCTGATCGATTTTCACCATCCGCGCGCCGGTTCGACACGAAGACCGAACGAGCCGATGCCGGGCAGCGGCCACCCGCCGGCATCTCGCCGAAGATATCCCGGGCCGAGCGATGCGTACTGAATGGCAAAATCTCAGCGTCGCGCTGGCCTATGCCGCGGCGGGGTTCGGCACCTCGGCACTGCTCTCGGGATTCAGCTTTTTCCCCTCGCCTTTCTGGCCCCCTGCCGGCATCGCGCTGGCGGCGGCACTGCTGGGCGGCACCCGGCTATGGCCCGGCATCTTCGCCGGCGCCTTCTTCGTCAACTGGCGCCTGTTCGGCTTACCTCTTCCGCTGGCGATCGCCATATCCGTGGTCAATGTTGCCGCTCCGGTTTTCGGCGCGCAGCTCGTCCGCTGGACGACGCACTCGAAGCTGCCATTTGCCCGGCTCCGGCAGGT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTAATCGAGACCTGATGAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //