Array 1 32890-34198 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYUT01000026.1 Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001691 contig00026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32890 29 100.0 32 ............................. TGACCGGCTCAGATATTGATGTTATGTCGTAT 32951 29 100.0 32 ............................. GGATCTTGCTGGATATTGATTCGCCAGGCGGT 33012 29 100.0 32 ............................. GTCAGTCATCTGTTTACAGTACAATGATCGAT 33073 29 100.0 32 ............................. TATGAAATGCGGCTTAAAATTTGCCAAGTGAA 33134 29 100.0 32 ............................. CGTATGCGTTCACCAATGGTCATCTTTTTCAT 33195 29 100.0 32 ............................. GAGTCAGCCCAATGAGCAACATCGACAAATCA 33256 29 100.0 32 ............................. CAAAACGGCCTGGTAAGCTGGAATGACAACGC 33317 29 100.0 32 ............................. GCAACCCCGTTTCGCAGATCGCCGCCCTCGGA 33378 29 100.0 32 ............................. CCATAGAGTTATAGTTACTTTTGTCCGCAAAC 33439 29 100.0 32 ............................. GATGCTGGGTATGGCAGGTATGATTTGTGAAA 33500 29 100.0 32 ............................. TTTGCTTCCCTCGGGGCCGTGTCGCGCCCATT 33561 29 100.0 32 ............................. GGCGGCGAGTTCGGCTGGGTCTTTGATAATGA 33622 29 100.0 32 ............................. TCTGAATGCCTTTTCTTTTACATCTGGATCAT 33683 29 100.0 32 ............................. ACCATAACGAACCATTTCATCCAGCATGCGGC 33744 29 100.0 32 ............................. CCTTGTTAAATACAGGCGGTGGCGGCGGGGCT 33805 29 100.0 32 ............................. ACAACCCGGAAATTAAATTTTATCAGCACAAA 33866 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACGACTCAATG 33927 29 96.6 32 ............................T CGGAAAAATGCGCGCCGCAGGGGATGATGGGC 33988 29 100.0 32 ............................. CGTTGGGTTGTTTACCTGAGTATTTAGCAACT 34049 29 100.0 32 ............................. GTGGTAATGGTGCCCGGTCCGGCCGGGTCGCA 34110 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 34171 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGTTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 50905-52216 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYUT01000026.1 Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001691 contig00026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 50905 29 100.0 32 ............................. CACCGGAACTGCCTCGCCCCCCTTCAGAATTA 50966 29 100.0 32 ............................. CTTCCCTGCGAACTCTTCTGCCATCCTGAACC 51027 29 100.0 32 ............................. CCGCGTAAATTTTCAGCAGTTGATCAACCCGG 51088 29 100.0 32 ............................. CGCACTCAGGCCGGAAAAGTTATTTACGAAAT 51149 29 100.0 32 ............................. ACGCGCCGCCGCCTGGCGGCTTTAACTCAGGT C [51154] 51211 29 100.0 32 ............................. CAGCCTCGTCCGACACGGATCAGGGTGAGGTA 51272 29 100.0 32 ............................. CCGTGATTCGACCTCTAAATGGGTTCTCATTC 51333 29 100.0 32 ............................. AGCTTTGGGGAGGGGTTGTTTCGTTTGGTGAG 51394 29 100.0 32 ............................. CACAGAAGACGATAACGGGAGATTTCCCTAAG 51455 29 100.0 32 ............................. GTGAATGCGCAGAATATAGATGGGGACATTAC 51516 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 51577 29 100.0 32 ............................. TGATGCTGGAACATTGGGAGATGATCAACACG 51638 29 100.0 32 ............................. TTTATTTTTTATTCGATATTGTTTTTGAATAT 51699 29 100.0 32 ............................. CATCCCCTGACGCTGTAGAGCCATTTCCTGTT 51760 29 100.0 32 ............................. CGACATTTCAGCGGCTATCATCGAACAGTGTG 51821 29 100.0 32 ............................. AAATGTTTAATAAATACAGCAAATGCATATCT 51882 29 100.0 32 ............................. AACTGGCATCCCTCATGGTTGAGGGATTCAGT 51943 29 100.0 32 ............................. TTCGCGCTCAACTTATGGCGGTATTAAACACC 52004 29 100.0 32 ............................. CGCTTTATCGTAACTGTTTACCCGATAGTTCT 52065 29 100.0 32 ............................. GCTATCCAGCCGAGAAATGGCAGAACCGGTAT 52126 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 52187 29 93.1 0 A...........T................ | A [52213] ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACACCCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAAAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //