Array 1 15192-14640 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEKL01000013.1 Limosilactobacillus oris PB013-T2-3 contig00060, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================== ================== 15191 29 100.0 32 ............................. TCCTAGGACCTTGGCGTTCTCAAAGTGCTTAA 15130 29 100.0 32 ............................. TGCAGCCCCAATCATACCGGTGACCCCTTTGA 15069 29 100.0 32 ............................. AAAACCTCCTTTATCAGTTGGCTCGTTATAAC 15008 29 100.0 33 ............................. GCCTGCGGAGTTTAAGGCCGTTCAAAAAGGCTA 14946 29 96.6 32 ............................T AAGCCCTTAAAGTATCATGTTCGCGGGCAGTT 14885 29 96.6 32 ..............T.............. AAGCTGATCATTATGCGGAACCAATTACAGGT 14824 28 89.7 67 ..............T.....T.-...... ATATACGTAGGGCTAAGCTATCGCATTTCTCGTACGGTATGTTGTATAATACAACCATTAACTTTTG 14729 29 86.2 32 .............GTA............T GAAACGATATTCAATGAGATGGATATCCAAGC 14668 29 69.0 0 ...........ACTT.......CA..TTA | ========== ====== ====== ====== ============================= =================================================================== ================== 9 29 93.1 37 GTATTCCCCATGTACGTGGGGGTGATCCC # Left flank : TCTGCGCAGATTATTTCAATTGGAGCGGTGAAACGAGTAGCTGGGCACACGACAACTTTTTATCGGTTAGTAAAGCTGGAATCGGGCAAGAAAGTGCCGGTGGATATTGCCCGCATGACTGGATTAAATAATGAGCGTTTAGCTGCGGAAGGCGTGTTAGTTAAGGAAGCATTGATAGACTTGCAGGCCTTTACGAAGGGCCTGCCAATTGTTGGTTATAACTTACTTTTTGATGAACGCTTTTTGCAAACTGCAGTTATTAGAACGGGCATTGTTCAGTTTAATAATAAGATGGTAGATGTGTTGCCATATGTTAAGACGACTGATAAGTTTTGCGATAATTATCATTTAACAACTGTCCTAGCCAAGTATGGCGTTAAAAATGAGCAACCACACAATTCATTAGCGGATGCAACAGCGACTATGGAGCTAGTTGATAAACTCATTAAAATTTACGGCTTTCGAATATAAAAACCGCGGCCCATCAGGGATCTTTTAGT # Right flank : CTATTAGTACTTTCTTTGATAGTATTCAGTTGCGTTGATATATCAAGGAGTACGTATTTCCTTAATTTGCGCCACTATTGCAGTGCCAGAAAAAGGCGTTGTAGTAGTGGCTTTGCTATTTTTTAAAGAGCAGCCCCATATTTACATTAAGGATTATCAGCAATTTTTCTTGAATAAGGGATAATAATCCTGTATTTATATTAGAGAGCCCCACTGTTTTAAATAGGAATTAGAAGACCAGGAGGTGACCTTTTTGAGAGAATACAAAAATAAGGAAGAACTCAAAAGTGAAATTAATAAGTCATTCGGAAAATATATTTCTGAATTTGAAAACATTCCAGAAGCTATGAAGGATAAACGGGTCACCGAAGTTGATAGAACGCCAGCAGAAAATCTTGCTTATCAAGTGGGGTGGACGACCCTCGTCCTCAAATGGGAAGAAGACGAACGGATGGGTCTCCAGGTTAAAACACCATCAGATAAATTCAAATGGAATCAAC # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.26, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCATGTACGTGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.40,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 27694-27053 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEKL01000013.1 Limosilactobacillus oris PB013-T2-3 contig00060, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 27693 29 96.6 32 ............................A TTGCCCCACCAAGTCGACTTTATCCTTGATGA 27632 29 96.6 32 ............................C TGGCACCGCCATATGTCAGTACCAAACCTCAA 27571 29 100.0 33 ............................. AAAATCTTAGACGCTCTAAACAAGTATTTCATG 27509 29 100.0 32 ............................. CTTCATCGTCCATCAGACGTGGCTGCGTGCTG 27448 29 100.0 32 ............................. TCATGCGGGCCATAAGTCAATCATGGTTCAGC 27387 29 100.0 32 ............................. CACTATATTCATGGGACGCAGAGGGGAATTAC 27326 29 96.6 32 ............................C AATGGCAATTACACCATTAATCGACTTAAAAG 27265 29 96.6 32 ............................C AATGGCAATTACACCATTAATCGACTTAAAAG 27204 29 96.6 33 ............................C TTGGTACCTGTTATTGAAGAAGTACGGGAGGAA 27142 29 100.0 32 ............................. TGATAGGTCGGTGGCGTGCCAGCCGGCTAATT 27081 29 93.1 0 .............G..........G.... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.8 32 GTATTCCCCATGTATATGGGGGTGATCCT # Left flank : TTGCTATCTCCAGCATATGAAAAAGAGACGACTAGCATATGGTTATCGCAATTTCAGCATAGTTTTCCGGCATTTGTCGATCGTTTTCAGCTTAATTGCTTTGTCGATGAAGAATATAACATTTTAGATATTGTCAGCAAGCAAACGAAAATTATTGAAAGATTTCCTGATAGAAAAGCGGTAGCGGCGTCGGTTCCAGCCTATATTGATTCATTAATTTCTTTAATTCAACAAGGATATTTTGATTAGGCAGAATGTATTCTTGAAAGAATAAATATTAAGTCTTTTCTCTGGTAATTGGATGTATTAAGAACTAATGATAGGAGCTGAACCTAAGGAAGCTGTTTGAATGATGATTCAGTTTATGTATTATTCAAATTTCAAATAGAAAAATAAGAGTTCATAGAAGTTAACTAAGAAGGGGCGTATCAGATTAGCAAACTAAATAAAAATTGAGGTATACTTGGAGCAAAAGCCTGATTTGTTGGTAATCTTTTAGT # Right flank : AACCAGCTTCAATGGTTAGCGACTCGTTCTGGGCAGCTCTATGCTGAAATGCAAAAGGAAGTCGACAGTCTTGACATTCAACGGGCTAGCCAGGACGCTCAGAAGCTGGTTGGCCGTGCTAATCAGTTACGTGGTCAAGGCCACCGTGTTACTTATGGTGACTATACGTCCGAAGAGAACGCCCGAATGCGGCTGTACAATGCCACCATGCGGATCAACCGCCTGGAATTCTTGAAGTCCGAAGTTGGTCTTGAACTGACGCGGTTGACCGGCGAGCTTAACGCTTCACTGGGGCTAAAGCTCACTGATGATGCCCGTAAGGAATTCAAACGTCAGGCTGGTATCATAGGCGAGCAACTGGGTAATGCGAAGACCTGGACGTCATTTCAACCACAGGTACTGGTGATGAAGAACGTTCAGGGTGGTAATTGGTCCCAGCGCTTGTGGAAGAACCAGGACGTCCTGAAGGCCAATCTTGACGCTGTGCTGTCAGCTGGCTT # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCATGTATATGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //