Array 1 41105-39429 **** Predicted by CRISPRDetect 2.4 *** >NZ_CXXO01000012.1 Escherichia coli isolate Beef cow fecal, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 41104 29 100.0 32 ............................. GAGAGAGTCCAGTATCAATCCCGCAATCCGCA 41043 29 100.0 32 ............................. CGCACCGGCTGAGCCAGCAACAACAGAAACCG 40982 29 100.0 32 ............................. ATCCGTACCGGCTGCGCCGGGCTTCGGCGGCT 40921 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 40860 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 40799 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 40738 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 40677 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 40616 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 40555 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 40494 29 100.0 32 ............................. GGTTATTTATAATCCATTGTTTCCATTACCAG 40433 29 100.0 32 ............................. CTGGTCGCGGCAGGGCGTTCAATTTTAGGGGA 40372 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 40311 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 40250 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 40189 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 40128 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 40067 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 40006 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 39945 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 39884 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 39823 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 39762 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 39701 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 39640 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 39579 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 39518 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 39457 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 28 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 68543-66806 **** Predicted by CRISPRDetect 2.4 *** >NZ_CXXO01000012.1 Escherichia coli isolate Beef cow fecal, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 68542 29 100.0 32 ............................. CCAGCGACCGCGACATCTCTCTATATCTCCAG 68481 29 100.0 32 ............................. CTCCCGTTTTTGGGTACATTCGTTTTTGATAT 68420 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 68359 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 68298 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 68237 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 68176 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 68115 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 68054 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 67993 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 67932 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 67871 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 67810 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 67749 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 67688 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 67627 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 67566 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 67505 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 67444 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 67383 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 67322 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 67261 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 67200 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 67139 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 67078 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 67017 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 66956 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 66895 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 66834 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTATCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //