Array 1 23304-24336 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMYM01000007.1 Alkalihalobacillus lonarensis strain 25nlg, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 23304 33 97.0 34 ................................T TTTAATATTTTTAAAACGTACCGAAACGGGCGCG 23371 33 100.0 34 ................................. CAATCCGAAAGCTATACATTCTTTATTGGCGCCA 23438 33 97.0 34 ................................C CTTCGTGTCATCCTCTTTTAATACATCCTCAACG 23505 33 97.0 34 ................................A AATAACGGAGGTAACAACGAATGGCAAAACGATC 23572 33 100.0 33 ................................. TCCAACGGCTTAAAATGCTACGGGAAGAAAAAG 23638 33 97.0 33 ................................A TCAAGTTAATCATTTTTTCCAGTTGTCCATTTT 23704 33 97.0 34 ................................A TGTAATCTCCTCAATTTCGACCACCAAACATATC 23771 33 97.0 32 ................................C ATCTATCCAAGGCATTATAAGCCCCTCCTTTG 23836 33 100.0 36 ................................. CTTTCAATAGCAGTAGTACATGCAACTGAAAAGTAC 23905 33 97.0 33 ................................T TGTTTGAATGGTGGGACAAGCTAAAATTGTTGT 23971 33 100.0 33 ................................. GTAAGCGATTTTAGTTTGGTCGAGAGAAGCCAT 24037 33 97.0 34 ................................C TTGCCACTCGTATTTCTTTTCAAAGGACATCGGA 24104 33 97.0 34 ................................A GCAGTCTTTCGATTTCTGACCAAACATAATTTTC 24171 33 97.0 32 ................................T ACTCTTTCAATCGCTTTTTCGTGTAATTGTCG 24236 33 97.0 35 ................................C CCTGTTGTTGTCCATCTTAATTGTACCTTGGAGAT 24304 33 97.0 0 ................................T | ========== ====== ====== ====== ================================= ==================================== ================== 16 33 97.8 34 GTCGCACCCTACTTGGGTGCGTGGATTGAAATG # Left flank : CGTCTTTTTCAAATTCGTTCATGTCACATTCCTCCTTCTTTCGTTGAAAACATTATGTTATGTAATACGCCAATTACTTATAGTATAGCCCAATTATGCGCAAATGAAAAGAGATGATCTGCAAATGCACAATATCGTGCACGTTGCATACGATGTTAGCAAGGCATCCCGCTTTTAGAAAGAGCACCTAGGATCTTGCTAAAAGCGTTTATTTATAGATGTCTGTATAACGAGGGCGCACGCTTGATGGTGCGCCCTTGTTTTAATTCGAGGAGTTAAGTTACAATGAATGTATACAGGCGTCATGTTTGGGAGGGGCAGTCAATTTCTGGTGCGAACCCGAGGTGCACATGAAATCCCTGGGGGGTTCGCACCACGAAATAGGTGTATTTGTGGATAATTTAGTGATGTTACCAAGATTTTTCCTGTTATGTCGTGACATTTAAAGTGTCTTAGTCCAAAAAAAGGTATTTATTGCGCTTTTTTAGGGCTAAATCGCT # Right flank : TTTGTGCTCCCTTGATGAATCTTTGGACTATTTTACATAATGTATACGACAGATAGAGAAAAATAAACGAATAGGGGAAGAGATCATGAAGCTATTAAAAGAAATGAGACAAACGGGACCAGAACCCATCTACTTGCTGCATGGAACCGAAACATTTTTAGTGGAGCAATTTTTACAAGCAGTACGCGAAGTATTGTTTCAAGGTGAAGATAGCAGCATGAATGTGGTGTCATTGCGGCTTGCAGATATGCCGCTGCATGAAGTGGTCGAGGAGGCACGAACGTTACCCTTCTTTGCAGAGAAAAAGCTTGTCATTGTTCATGACTTTTACATCGTCACAAGTCAAAAAGTGACGACACCGTTTGAGCATGATGTATCAGTGTTTGAGGCGTATATGTCTTCCCCAACGCCAGGAGTGACGCTTGTACTTATTGCGCCGTATGAAAAATTAGACGATCGAAAGAAGATAACGAAGTGCTTAAAAAAAGGTGCTGCGCTTG # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTACTTGGGTGCGTGGATTGAAATG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 98435-99403 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMYM01000007.1 Alkalihalobacillus lonarensis strain 25nlg, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 98435 33 100.0 34 ................................. AAGTAAGGTGCGAGCCTTTTCTTGAAATGACCAT 98502 33 100.0 33 ................................. TTTTTGAGGCTGTATGACATCTGCACTGCACGC 98568 33 100.0 34 ................................. TCGGTGAAGTTCAAAAAAAAATTGTAAACACAAC 98635 33 97.0 33 ................................A AAATGCAATATCCCCAGAAAGAGAAACACCCTT 98701 33 97.0 34 ................................C CCTTCCCGCTCATCCGCGTGCCTATGATATCCCC 98768 33 97.0 33 ................................A AATCGCGTGCGGTCTTTGATTGATCCTACTAAC 98834 33 97.0 34 ................................A AGTCTAGGGTTATAGAGGGTAGCGGAGACGAAGA 98901 33 100.0 34 ................................. TTTAAGCTTTTCAGCATTTTCAGTTGTGTACTGG 98968 33 97.0 32 ................................C CGCATTTTCCGTCACTCCCCTTTTTGTCTTAT 99033 33 100.0 37 ................................. ATGGGCGATTTAAGAGACGAGATTCATTTGCTATACC 99103 33 97.0 33 ................................G GTTGGGAAAAAAGTGTAACGCGCAAACCGCTGG 99169 33 97.0 34 ................................A CCTTGGATTGAGAGTCCGTTACATGATAAGGATT 99236 33 97.0 35 ................................C ACATACCGCTTATACGCCACTTGATATTCCAAGCC 99304 33 87.9 33 ..T.T..................A........G CCTTTTTTGCACACGATGTTGCTTGTTGAAATT 99370 33 84.8 0 ..............C...........C..TC.A | C [99396] ========== ====== ====== ====== ================================= ===================================== ================== 15 33 96.6 34 GTCGCACCCTGCTTGGGTGCGTGGATTGAAATT # Left flank : ATTTCACACTGGAGTTAAATCGCATGATAAGTGAAAAGGCAGGTATTGCTTGGACAACAACGGGCCATACAGGTGTGGACGTGCCTCTTTATGCGTATGGTGTGGGAGCAGATTTGTTTTATGGAACGATGAATAATACAGATGTACCCGGGAAAATGAGCGAAGCATTAGGCATCAGCGGATTTTAAGGAGGTAGAAGCAGGCGGGGTAAGTCTTCCTACGCTTGCTTTTTTTATATAATCCAAAGGTGTATTAGATGACATTGTTTAGTGTGTTAATTTTACTCTATAAGGAGCAAAAAAGAACCTTCTACGGGACAGGTGCGAACCTGAGGTGCACATGAAATCCCCGGGAGGTTCGCACCAACAAAGTGGTATTATTTGTATGTTTATCGTCTGTATTTGGCTATTTTGAAACGTTTGTTCGAGATATTTTTGTGAAATACAAGATATTTATCCTTAGGAGAGGGCTTTAATCTCCTTTTTATGGGATAAATCGCT # Right flank : ATGGACATGAGCAAATTCATTGCGGCGCACGCTGTTTTTTGTTACGATCAGGTTAGATGTAAGCGATGTAAGTGCTTATGTCTAGGAAATGCTTATTTTTAAGGAGGAAGAAAACCATGGCTTATACATTACCAACATTACCTTATGCAGTAGATGCGCTTGAGCCGCATATTGATGCAAAGACGATGGAGATCCATCACGGTAAGCACCATAACACGTACGTAACGAATTTAAATGCGGCACTTGAAGGGCATGCAGAGCTCGCAAGCAAAGACATTGAGTCGCTTGTAACAGATTTAAACGCATTACCTGAAAGCGTGCGCACGGCTGTGCGTAATAACGGAGGTGGACACGCAAACCACTCTTTATTCTGGCAAATTCTTAGCCCAAATGGCGGCGGTGAACCAACAGGTGAGCTTGCCGAGGATATTAAAGCAACTTTTGGTAGCTTTGAAGCGTTTAAAACAAAGGTTGCAGACGCTGGAAAAGCGCGCTTTGGT # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTGCTTGGGTGCGTGGATTGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 104909-105338 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMYM01000003.1 Alkalihalobacillus lonarensis strain 25nlg, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 104909 32 100.0 34 ................................ CCCTTTCGCATGCTCACGAGGGACGTTGGATGAC 104975 32 100.0 36 ................................ GCCGACTTGCGCCATTTTGGTCATAAATGCTTGGAT 105043 32 100.0 34 ................................ ATCGAAGTTATTCTTTTTAGATTCGATGGCGGCA 105109 32 100.0 33 ................................ GACCGTTAACTTTAATCGGACCCGTGACCGTAA 105174 32 93.8 34 ....................CT.......... CGGTTGTCCGCGTAAAAAGGTTTTGCTTCTCCGC 105240 32 87.5 35 ......C...GC.........T.......... TATTGCAAACAGCTCCATCATTCTTGTTCTGCCTT 105307 32 84.4 0 ......C.....CC.......AC......... | ========== ====== ====== ====== ================================ ==================================== ================== 7 32 95.1 34 GTCGCATCCCATGTGGGTGCGCGGATTGAAAT # Left flank : CAGAGCGAGTGTCTTATTTTGCCCTGATCCTTAGTGTACTCAACTTTTCATAAAAAAGGAATGTTTATATCGTTATTTTTTCTGATGATGTCTAGCTGTTATTTTTGGTTAGTATGTACATTAAATAGAAAGGCATATGCTGTTCATGTCGTTCTAATTAAGACTTTATGAGGAAGTGACAAGGGGAAATAGTCTAAAAACTAAGCGCCCGAGTATATGAGATGACACTATCTATGGTTTGTGGTAATTTTAATATGTAAGTGCGTGGATCGCTTTTGAAAAAATATGCGTTACTGTTAACTCAAGTTGCATGTAACTTATCAGTGCGAACCCCAAGTGCACATAAAATCCCTAGGGGGTTCGCACCAAAAAAGATGCAGTTTATGGGTTATTTATTTATTTTTGGTTACTTGTATACTTCTCTAATGTTTCTTCAGGGAAAAATATGCGGTTTTATTCCAGAAAAAGCATTTAATTTCCTTTTTTTGTAATAAAACGCT # Right flank : TTATCCTGCTTTCCCCATCTAGGTGCATCAATTAAAATGTTGAAGAATGACAAAGGAGGTGCAAGCCTTGGAACAGGAAAAGACCATGCAGCAAATGCAAAAAGAAGTCGATGATTATATTGGGCAATTTAAAGAAGGCTATTTCAGTCCACTCGCGATGCTTGCTCGGTTTACTGAGGAACTAGGAGAACTTGCGCGCGAAGTAAACCACTACTATGGTGAGAAACCGAAAAAAGAAACAGAAGCAGAGAATACAATTGAACAAGAAATGGGCGATTTGTTGTTTGTGCTCATTTGCTTAGCAAATTCCCTGCAAATCGACTTAAGCACAGCACATGATGAAGTGCTACATAAATTTAAAACGCGGGATGCACACCGCTGGACGAGAGGATAACTGAAAATGAATACATATAAATTAGTTGTTGCTGGACCACGGGGGAAAATGGGACGAGAGGCGGTGGCGCTTTGTTTGCGCGAATCGCAATTTGAGCTTGTGGCAG # Questionable array : NO Score: 9.01 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCATGTGGGTGCGCGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //