Array 1 70071-71786 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT821259.1 Cohnella massiliensis strain 6021052837, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ========================================= ================== 70071 33 100.0 34 ................................. AATGATGGATTTATTGCGTTCTTCCAAGTAGCGG 70138 33 100.0 33 ................................. CCATTTGGCCTGCGCCTTCCCTAGGCGCTCGCC 70204 33 100.0 34 ................................. TGCGAGAGAGAACCGTTTCCGCAGCAAGTCCTCC 70271 33 100.0 36 ................................. TTGCCAAACTTTCCGCCTTTTTGGACGGAGCAGAAA 70340 33 100.0 36 ................................. GCATAGTTTCCACTCCCTTCATACTTCCGAACGATT 70409 33 100.0 33 ................................. CCTGCTGTTGAAGCTTAAGTCTTGCCCTGATGA 70475 33 100.0 33 ................................. GGTCACCTGCCAGAAATGTCGAACCCCATAAAA 70541 33 100.0 34 ................................. ATTGCAAGCAGTTGCGAGGAGCAAGTTACACAGT 70608 33 100.0 33 ................................. AGCACGTTGTCCCAGAGCCACGTTGCCGCCGTG 70674 33 100.0 34 ................................. GATCACCGCAAGCTCTGCATGGGCGTCCTTAGCC 70741 33 100.0 33 ................................. CCGGGCATCGTGACGGCGTACAGCGTTACCTCG 70807 33 100.0 32 ................................. GATTTTCCCTTCTGCGTCAACGGACAGATAAG 70872 33 100.0 36 ................................. CTAAAACGCCGCAAGTCGAGGAGGAAACCAATCATG 70941 33 93.9 37 .......C...C..................... GTCCTGTTTCGGTTCGGAATTGGCTGGCGTGATATAC 71011 33 93.9 34 .......C...C..................... TTCCAAGTCCGCTAAGTCGTCAAAGAGTGCTTTC 71078 33 93.9 34 .......C...C..................... GGCCCCATGATGACGTTTGTACCAACGACAAGCT 71145 33 93.9 34 .......C...C..................... CGTAAAGCTTGGCCTTGACGAAATATGACATCCC 71212 33 93.9 34 .......C...C..................... TTGCCGGCGAGCGGCGGCCCATAAACCAAATAAA 71279 33 93.9 33 .......C...C..................... ACAGGATCGAATTGGGGAGAAATTGAAACGTTT 71345 33 93.9 33 .......C...C..................... GCTCGTCGTAATCCCACCCGCGCAGCCAGTAGG 71411 33 93.9 33 .......C...C..................... TCCCCGGTGATGACACGACCGTATTTTACTTTT 71477 33 93.9 36 .......C...C..................... TCGATCGCTGGTGCAGCCGCTTGTTGAGCGCCTTTC 71546 33 93.9 34 .......C...C..................... GGCACTAACGTCGAAGTTCGGATAACGCTTCTTG 71613 33 93.9 41 .......C...C..................... ACTTTATGCTTACGCGAGTATATAATTATATAATAAAGATA 71687 32 78.8 34 ......CC..CCG.............-...G.. CTCGGCATCTTGGAAACAATGGTTATCCAGACAG T [71696] 71754 33 84.8 0 T......C...C..................GG. | ========== ====== ====== ====== ================================= ========================================= ================== 26 33 96.0 34 GTCGCATTCCGTATGGGATGCGTGGATTGAAAT # Left flank : TCGCTTTTTTGGCGGAGCATCCGAATCGGGTTTTTCACAAGGAAGAGCTGTTCGAGAAGGTTTGGGGGCTGGAAGCGAACGGCGACAGCTCCACGGTGACCGTCCATATTCGCAAAATCCGCGAGAAGCTGGAGTCGGTTCCGGCGAGTCCCTCGTACATCGACACCGTCTGGGGGGCGGGGTATCGGTTCAAGGTGGATTGAACGCTTCTTTTTTCCGGTTTAGATGCATCAGAAGGGAACAGGCTTTGTTGACGTTCGATGATACGGAACGCTAAAATAGAGCATCGGTTTTATTTTTTTGGCCGTTCAGAGCCGTACATATCTTGTGGTGCGAATGTGAAGCGCACATGATTTTCCCGGGGGATTCGCACCAAATTTCTGCAAAAATTTGGATATCCGACTGGCGGATTCACACTATTTGGTTTTATATTTGCGATAATAGCGCCATTATATTCACGAATACATGTATTTTTGGGGAATATTAGGCGAAAAATCGCT # Right flank : TGGTATTATGGGAATCGAAAAGGTGCCTCAGGAGATGAAGGAGAAGCTCCAAAAGCTATTTAACGAGTATGGCCTGAGAGAGGGCCATCTTTATGCTGACCTAAGTTCTGGTGAGGTTGTAGTACGTACGAATAAAGCTTCGCCCGAAGATTTACAGTTGGCGAAAATCATAGCAGACATTTATGCAGAGAGGGACCCTGAAAATATTGAGAGGATCGTATTGTTCGGGTCAAGAGCTCGCGGGGATTCAGGCGCCAGCAGCGACTTTGATATCCTTATTTTAGTAGAAGAAGATAGTAAAGATATTCGTTCAAACATACGGGCGGGAAGGCGGCACTCAAGTAAATTTCCTATAGTTGATCTAGACTTGCTTATTTGTACGAACGAAGATTTTAGGAAGTCTACGATTTATGAAAGTGTTTTGAGGGAGGGAATCGTACTTTATGAGCGATGACTACAATGTTTGGTATGGAGGGGCAGAAAAAGATTTAATAGCAGCC # Questionable array : NO Score: 8.83 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATTCCGTATGGGATGCGTGGATTGAAAT # Alternate repeat : GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: F [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 81101-82271 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT821259.1 Cohnella massiliensis strain 6021052837, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 81101 33 100.0 34 ................................. CTGGTGCCAATCATGCAAAAGCACGGCGAGCGAT 81168 33 100.0 33 ................................. ATTTTCTGTTAAGGCTGAACCTTGTGAGTTTAT 81234 33 100.0 34 ................................. ATAACGTGCCCGAGTATGACGACAACGGAAACGA 81301 33 100.0 33 ................................. CTCGACTACAGGGATTTCTCGCCCATCCTGCTC 81367 33 100.0 33 ................................. AACGTGCGTCTCATCATAGACCATTGATGGTAT 81433 33 100.0 33 ................................. AACGTGCGTCTCATCATAGACCATTGATGGTAT 81499 33 100.0 35 ................................. GAGAAGTTGCCAAGCTCGCCAGCAAACAGGGCGTC 81567 33 100.0 33 ................................. GTACCGCGAGCACATTAACAAACACGGCAAGAC 81633 33 100.0 36 ................................. CTCTCCGGTCGCCGTCCGATTAAGCGGGACAAGCAC 81702 33 100.0 34 ................................. CGTAACGACCGATACCATCCAGGATGGAGCCGTA 81769 33 100.0 34 ................................. CGTACAAGTCCGACCAGAGATATTGACTCTTCAA 81836 33 100.0 35 ................................. CCTCATGTTCCTCTCGCAACTCGGATACATGGTCG 81904 33 100.0 34 ................................. CGACCTCAAGACCGTCGCTAACATCCGCAAAGAG 81971 33 100.0 34 ................................. GTCGATTTGGTCACCGGGTCCTTGACGGGCTCGT 82038 33 100.0 34 ................................. TTCGAAACCCGGTATATATTGGCCGCGTCCGTTG 82105 33 100.0 33 ................................. CTTTCCGTCCGATACTACTCCAGATGATGGTAT 82171 33 100.0 35 ................................. AATATCATCAGATCGGCGGCGCCGGCGTCCCGCTC 82239 33 81.8 0 ...........CA..............A..TCG | ========== ====== ====== ====== ================================= ==================================== ================== 18 33 99.0 34 GTCGCATCCCGTGCGGGATGCGTGGATTGAAAT # Left flank : TTTTTTGTGGAAGTAGGTGATCTCAATGCTGGTACTCATCACGTATGATGTAAGTACGGTTAACAGCGCAGGACAAAGGCGATTGCGTCAAGTTTCAAAGGCATGCCAGGCCTACGGGCAACGCGTACAAAATTCCGTATTCGAATGCGTAGTTGACGCCACGGAGTTTAAAATCCTAAAATTAAAGTTGCTGGAATTGATTGACGAGGAACAGGACAGCCTTCGCTTTTACCAATTGGGCAACAATTATAAGGGCAAGGTAGAGCATTTCGGAGTGAAAGAGTCCCTTGATTTGGAAGGCCCGTTGATTTTGTAGCGGGAATCCTCGTGGTGCGAATGTGAAGCGCACATGATTTTCCCGGGGGATTCGCACCAAATTTCTTCTAAATTTTGGAATTTGCTTCGGATAATTAACATTTTTTGGGCTTCTATTTTCGATTTGAAAGCGATTCTTCTCTCGTATAGTTATATTTTTGGGTAATTTTAGGCGAAAAATCGCT # Right flank : GAAACGAATAAAAAGAGCCCGGCCGCCCTAAGGCTGGCCGAGCCCGGCTTCGCGCGCCATGAGAATGGCCTGCGCGCGATCGACGACCTGCAGCTTGTTCAGGATGTTCGAAACGTGGTTGCGCACCGTCTTGAGCGACAGGCCGAGCTTCCGCGCGATGAACGCGTTGTCGTGTCCTTTCGCGATCCATTCCAGCACTTCGCGCTCCCGGTCCGACAGCTCCGGAAACAGAGGCTCGGCCGGCTTATTCGTCAGCGCGTCGAAATAAAACATCATTCTCCGCGCGATCGAGGCGCTGAAGATGGCTTCCCCGCTCCCGACCGCCTGGAGCGCCCGGACGATTTCCTGCTTGTTCGCTCCTTTGAGGAGATAGCCGCGGGCTCCGGCGCGCATAGCCGAAAACACGGACGCGTCATCGTCGAACATCGTCAAAATCAGAATCCCGATATGGGGGCTGTGCCAGACGATATCCCGGGTCGCCTCGATCCCGTTTTTTCCCG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGTGCGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.30,-6.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 968263-969367 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT821258.1 Cohnella massiliensis strain 6021052837, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================== ================== 968263 31 100.0 37 ............................... AAGGCATCCTTGCGGAGTTGGCAGCCCGCATTGCAGT 968331 31 100.0 35 ............................... GATGCTTGTAACATAGGCGTGCGTCGTGTACATGT 968397 31 100.0 36 ............................... CAACGGAGCGCCCGGCCGCGTTAACATCCGGGTTGT 968464 31 100.0 37 ............................... GTCCTTATCCTATCCGGCGACGCTGCGAGCGGTTTGT 968532 31 100.0 35 ............................... AACAAAGGCAAGCAGTTCAGGGGATTAAGCTTCGT 968598 31 100.0 37 ............................... CGGCTTAAGGTACATGCTTTTCGTCTGTCCAAACAGT 968666 31 93.5 40 ..........AT................... CCTCAGCCTCCCTGATCAATCGGTCAATATACCAACGTGT 968737 31 93.5 35 ..........AT................... CCGTTCAGGTAATGGAAAATCATCATCGAACCCGT 968803 31 100.0 37 ............................... GCTTTGGTTGATACTTGCCTTTGCAATTGCATCTGGT 968871 30 96.8 36 .........-..................... AGCATCCCGAGGTCGTCATTGATAAACGCCTCACGT 968937 31 96.8 36 ...............A............... TGAACGTACTCTTTATATCAGCCATAGCCAGAACGT 969004 31 93.5 35 ..........AT................... CTCGTCGATTGATTTAAGCACCGCGGCGGAATCGT 969070 31 87.1 36 ........A.AT..........A........ TTCCCTATAGATCAAGGTGAACGTGTGATGCTGAAG 969137 31 96.8 36 G.............................. TCCTCTGAGCGTTTCTGTCTGATCGGAGCAGATCGT 969204 31 93.5 36 .T..............G.............. CTTGACTGGCTTGTCCTCGCCGTGCTGTGCGGCCAC T [969216] 969272 30 83.9 37 .........AAT...-.A............. CACGAAGTATCGGGTAAACGTTGTACGGAATGTCCGT 969339 29 80.6 0 ...C........-..A...-..T.C...... | ========== ====== ====== ====== =============================== ======================================== ================== 17 31 95.1 36 CGCATCCCGTGCGGGGTGCGTGGATTGAAAC # Left flank : CTTGGAGCTCTTCGCTTCGGAGTTGGCGGTTGACTTCTGAAGCGCGCGGCTTCCGAAGCCTCCTGTGAATTTTTGGGGCTTTCCTTTTAAACGGTCATACCTTTTTCCTCATTCTCTATTTGCCACGGTCTTATCTTGGCGTTTCCTTTTCCAATTGCCGTAGAATGTGCAAAACAGATGCGGCCGTATGGGCGCGAACCCCAAGCTAGCTTGAAATCCCCGTGAGGTTTGCACTCCTTTCCGCGTGCCGGGGGCTGGCGGAAGTTTCGGAGGCAAGAGCCTTCAGAGATGCAAATCGCACAATTTTTTCACTAATGATCCCGAACTCTGGTGCGAACCCCAAGCGCACATGATTTTCCCGGGAGATTCGCACCTCTTGATATGACCGGGTTTCCGGCTTTTTATCATGAAAATACCCTTGTTTTAAGGTATAATAAAATGAGGTTCGCACTGAAGCGCTTGCAATCCCTTGCCGTTCAAGGGCTTTGCAGCCGTGCTGT # Right flank : CCCGTCTGCTGGATGGAGAACTTAGAGCCCAGTCAAGTGGTCCCATTCCACCTACACTGGTCTAAACTCAGCAGGTAGTTGGCATCTCCTTAATTCAATCACGCCCTATACAAAGTGCTTGCAATCAGTTCGCAGGTACTTGTCCAGAACTTAATGTAGCCAATCACGACAAGATTATCGTATGTTGGTTGTGGATTTTGGTTTTTCTCATTTCTAACCCTCAATAAAATATAGCCAATACCAGCTTATCCCCTTCCCCGCTTTACCAACTCTAGATCCCAATTTCCTATTCCTAAGGCAACCAAAGTAATAATTTGTAAAGTTTTGTGGTAAAATGTTGATATAAATAAATCTATGTTCCTATTTTTATATCGAAAGTTAGGTCGATGCGATGTTTTCTCATCTGGAAACGTTGACGCTACGAGCATCGTTTGTAGCCAAAAAAGAAGGAAGATTGCCTCCTTATTTAGGTTCAACGTTAAGAGGTATCATCGGGCATT # Questionable array : NO Score: 8.65 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCATCCCGTGCGGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-36] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 2 979349-980319 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT821258.1 Cohnella massiliensis strain 6021052837, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 979349 32 100.0 36 ................................ AAGCCTGGGCCGAAGCTCGTGCCCCGAAGGCTCCGC 979417 32 100.0 34 ................................ GATATACCATACCACTCATCGCGAGCGGTCACAT 979483 32 100.0 35 ................................ CCATCTTGTCTTTATTATATACGTGCGCACGTATA 979550 32 100.0 34 ................................ CAAACTAGCCATGATTTCGCCGAACATGTCCAGC 979616 32 100.0 33 ................................ CCCCTAAAACAAAAACAGCCGCATAAGCGACTG 979681 32 100.0 35 ................................ GAACGTCCGGAGGCTGTCACTAAACCAATCTCGAC 979748 32 100.0 34 ................................ CTTTGGTTCTCTTTCCATTGGATCAAATCGTCGC 979814 32 100.0 37 ................................ GGAACGCTTGATACTATCCCTCAAGAGTACAAGGACA 979883 32 100.0 34 ................................ CAGTTCCTTACGGTAATCGTCCCGTTCTGCCTTA 979949 32 100.0 35 ................................ TCCAATTACCCTGGTAGCTATGTCTACGACTCCTG 980016 32 100.0 36 ................................ TCTTGCTTGCCGGAATTCTTCCAGCGTCATTGCGTT 980084 32 100.0 34 ................................ AGGTTGTGACCGATCTTGGCGAGACGATCGACAT 980150 32 96.9 38 T............................... GTCATCCGGCTCTTTCTCTTTTGCTGACGCCGGCTGCG 980220 32 90.6 36 .......T........G..............T CGGAAGCGTTTCCGGTTTGGCGTTGATGTCGTCGGC G [980234] 980289 31 87.5 0 .......-....G..A.......A........ | ========== ====== ====== ====== ================================ ====================================== ================== 15 32 98.3 35 GTCGCATCCCATACGGATGCGTGGATTGAAAC # Left flank : ATTCGCGAGAACTGCAGAGAAGAGGGAGCTTTGTATACCGGGCCTATGAACCGGGAAACCACTCTATCGAACCTAAAGTTCTCGAACGATTGCTCAAGGTGACCGATTTTAATTTTCCCGATAAACCTCTGGTCAGCTATCCAAAAGTACATGGGAGAAGAAATGAGGAAATTTACCAATGGTTTGCGGCTAATCAATCCTTGCGGATTCAAAACGGAAAAATCAAACATTCCTCGTTTCCTCCTGTCATTTTGGAGCAACTGCCGCATATCGATTCCGCTGATCAGAAATTGCACAAGTATATTCAAATCAATCCAAAGTAATATTTGGGAGTGCGAACCCCAAGCGCACATGATTTTCCCGGGAGATTCGCACCCCTTGATATGAATGGGATTTCGGCATTTTAGTATGAAAATCCACCTGTTTTCAGGTATAATAAAATGAGATTCGCACTGAAGCGCTTGCAAACCCTTGCCGCTCAAGGGCTCCGTATCGTCGCT # Right flank : CAACAAGCATCAGTAAGATGTAGTTCCGTCGTTAAATCGAATGAATCCTATATGATTTAAATTAATCTACATCTACGCCCCAAAATAAAAAATGGAACGAAGCAGAATCACCCTCTGCCCATCCCATTGTTTTTTCCTCCCTATACCTTATGCCCCGTCCGGCTCCGAACTTTTTGCCATGTATACCCGGATCCTGTCCGCAAACGCCGGAAAGTCGTTCAAATGCTTCTCAATGATCGCCTGAACAATTCTGACCTCAATGTTGCGAAAACCGACCATCGCTTTCAGGTTGTTGCACAGTTCTTCCGAGATCACTTGCTCCCGCAGCAAAAAATCAAATGCCTCCTTGCTCGTTTGAGGCAATCCGAGCTTTTTTTCCGCCACCGTGTGCATGGCCAGATCGATACATGCCTCGCAGGCTCGTTGCAAATTCAGAATGATCGAGTCCTGCTTGGTCATATTCCCGAGGTTGGCCGGGTCTCCTGCATATTCTTCTTGAA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCATACGGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.30,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 981574-983290 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT821258.1 Cohnella massiliensis strain 6021052837, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 981574 33 100.0 35 ................................. GGGGATTGCTCAGTTCGAGAACGTCGCAGACATCC 981642 33 100.0 34 ................................. AATTATCATGCGGACGTTACAGGTCTATCCCAAG 981709 33 100.0 35 ................................. TTTAATCGTGTCTTCTCCCGGCAATTCGCCGTGCA 981777 33 100.0 35 ................................. GGGACCGGATCGCATTAGGTACGGACTGTGCCGGT 981845 33 100.0 34 ................................. CGTCCCCGATGTAGCGACTAATCAGCTCATCCCG 981912 33 100.0 35 ................................. GCATTTACGGTATACCGGATGATTACGGCATGGAC 981980 33 100.0 36 ................................. TTTGAGTACGCCGACATCAACGATAAAACGGGGCAA 982049 33 100.0 36 ................................. GGAAATACCGGGTACTGATGAAAGGGGTGAATCGGG 982118 33 100.0 36 ................................. GAAAGCTCGAGAAGCTCGGAGGCGATCGGTCGGCTC 982187 33 100.0 34 ................................. CGAAGATTACGGACACCCTGACCAATCAGACCGA 982254 33 100.0 33 ................................. TCGATTCCCAAGATCATCACGGTTTTCTTTGGC 982320 33 100.0 35 ................................. CCTCCGGTCGTCTCGTTAGCCCGCTGTGTGCGCTC 982388 33 100.0 35 ................................. TGTGACGTCCCTAAACGGCCCTACAGGCTTCGATC 982456 33 100.0 34 ................................. ATAGCCAATAAATTGGGAATGTCGTTGCAAGGTT 982523 33 100.0 33 ................................. GGCTGGGCACGGGCCTGTTCGGCCGAGTACCGG 982589 33 100.0 35 ................................. ATCGCCTCTTTGATGATGTTGTACTGCTTCGGCGT 982657 33 100.0 35 ................................. GTGCCCGCCGTCAGCGTCGGAGCCGTTACGCGGTA 982725 33 100.0 33 ................................. GTGTCCATTGCGGCCAGCGCGTTCTCGCCGCCC 982791 33 100.0 33 ................................. GTTATGGCGTATCACGAGGACGACGAGAATCGA 982857 33 100.0 35 ................................. ACATAGGGAGAGGCCAAGGACATGAGGCATACCGC 982925 33 100.0 33 ................................. TGCTCTGCAGAATGCTTCCAGAGAGCTGCCGCA 982991 33 97.0 35 ....A............................ ATAATCCGTGGACCGGGGCACAGGGTGACGCTAAG 983059 33 100.0 34 ................................. TGGTATGCCTCGTAACTTGCGGCCCCTTCGACCG 983126 33 90.9 33 .............T....G.........A.... ACGTTGAAGGTTAGGGATCTGTCTCATAAAGCT 983192 33 93.9 33 .............T...A............... GTACCCGTGTCGTCCTCCACTTGCTTTTGCCAT 983258 33 84.8 0 ..A........C.T...A..T............ | ========== ====== ====== ====== ================================= ==================================== ================== 26 33 98.7 34 GTCGCATCCCGTACGGGGTGCGTGGATTGAAAC # Left flank : CTGCAAGCCGTTGGGCCATCATAAAACGTTCGTAGTCCGAACTTCTCCGGTGCGACAAATACGCGATGTCCACGTCACTATCGACGCGCATCCGCTCCTTTGCCGCCGATCCGAATAAAATGACCGCAAACGCTTCGCAATTTTCAACGAGAAACTGAACGATCTCCTGCGTTTGTTTCTTCGTCAGTTCCGTTTTCATCTTGCCTCCTATTGAACTTTGAACTTTTTTGGGGAAAATAGGATTGTCACCGCAAAAGCGAGTAATCGTCAGAACCTATAGAGCTTTTTTTCTATCATAACCTCTTTTTTGGCGGAAATATACGGCATCACAAGTGCGAACCCCAAGCGCACATGATTTTCCCGGGAGATTCGCACCCCTTGATATGACTGGGATTTCGGCATTTTATTATGAAAAACTACCCGTTTTCAAGTATAATAAAATGAGATTCGCACTGAAGCGCTTGCAAACCCTTGCCACTCAAGGGCTCCGCAGCCGCGCT # Right flank : CGTAACGAATACGCAGGTCAGAAGGTAACGGGGATGCCCCGGAGCGATGCCAGCGCACGCTGTACCGTCAAATCTGGGAAGACCTGTCTGAACGAGAAGTACAGGTCGATCCAGCGGATGAGGCGATTGTCCTGGCGGGTGGCGCTATCCACCCGAATTCCAGATTGTGCATCGCCGTCTTCAATCGTTCGAATACCGCCTCTTGCGGTGCATAATCCAGAGTAATAGCCGCGGCTAACGATATCAGCAATGGTCAGTGCATCTTTCGGATCGTTCTTGGATGGACTGTTGTTACGATTTTCCTTAGAAAAAGGCTATTTCTCAGTCCCCTGCAGGAATGTTTAACCTTCGGAGAGCGATTCTTATTTCCGAAAAGCTTGAGCCGAGTTCTTAAGTTTTCTCTTTACTCATGATCGCGAAGAACCGCAAGGATGCAGGCAGTTTGATGCAGAAGCAACAAGTCTTCGAATACAGATTACTTGTTGCTTTTTACATCTGTT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGTACGGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.00,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 1000201-1000709 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT821258.1 Cohnella massiliensis strain 6021052837, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 1000201 33 100.0 33 ................................. ACTTGTTTATGCTGGCGATGATTATATGTGGTG 1000267 33 100.0 37 ................................. GCAAGATCAAGACGATCGTCGACGCGCTGAAGCAAGA 1000337 33 100.0 34 ................................. CTTCGACGCCGGCGTACGGCGCAGGGGCCGCTCC 1000404 33 100.0 37 ................................. ATGAACGCTTCCGCCAAGGAGAAGGCTGGCATCCTGC 1000474 33 100.0 36 ................................. GATCTTGGCAGCGTGTTTGGTTGGGTGCATAAAGAC 1000543 33 100.0 34 ................................. GTCCCGGGGATCAATTTCCTCCCAGTCAAGCGTC 1000610 33 100.0 34 ................................. GTGCAATGATTGGGGCCCATTTTGGGCCAAGAAG 1000677 33 75.8 0 .C.............A.AGA..CAA........ | ========== ====== ====== ====== ================================= ===================================== ================== 8 33 97.0 35 GTCGCATCCCGTACGGGGTGCGTGGATTGAAAC # Left flank : ACGAAGTCGCGCTTCGGGCTTATGCTTTGGCTTAAATTATCTCGCCAAAAATAAAGAAATGGCGGCACTCGAAAGCTTTACCTTGTGTCGCCATTTCTTTCTTCGAAAGGCGTACGGTTTTAAAAAAATCAACCAGATCCACGTCGCGTTTTAGCATATCTGCAAGCCGTTGGGCCATCATAAAGCATTCATAGTCCGAAATTCTCCGGTTCGACAGATACGCTTTTCTTGGAAAAATAGGATTGTCATTGCAAAAGCGTGTAATCGTCTGAACCGAAGAGCCTCCTCTCTACCATAATCTCATTTTTGGCGGAATACGGCATCGCAAGTGCGAACCACCCTAAGCGCACATGATTTTCCCGGGAGATTCGCACCCCTTGATATGACTGGGATTTCGGCATTTTAGTATGAAAATCCACCTGTTTTTAAGGTATAATAAAGTGAGCTTCGCACTGAAGCGCTTGCAAACTCTTGCCGCTCAGGGGCTCCGCGGCCGCGCT # Right flank : CCCTGTCGCCCATCCGGTATTATCGGGAGTAGAATTAATTTTCTCCCCAAAGTGTAGGGAAGAGGAGGAAAATGATGTTTAAACATGAAATCGGAAAGTAACCTCGTCAAAAAGTGAAAGATCCAGGCCGTGACAGGTTTTTTCCGTCATAAGAAGTTGCTAATTTTTTCGCAAAATAAACAGGACACTGCATGCCTCTTGTCAAAGGTTAAACCACCACAGAATAACCGACGAGAGGGAGTGTCCTTAGCAACATGGTACCACAAGCAACGAACCATGCGCCAGAACAAAAAACACGCCGCGAACGCCGAATGGAAATTCTTGCGGAGCGTCGCCGAATCAAACAGATCGTGAAGAAGTTGAGACCGGTCACGTTCGACAACAACACCGTCACGGAAGCCGGTAACTTCCAGTTCCTCGCTCGATTCAAGGAACTCATCGGTCTGGATGCCCTGATTGAAGATCACTTCCATCTGGAGCAGAAAGCCAACTGTGTCTAC # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGTACGGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.00,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 1003561-1004526 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT821258.1 Cohnella massiliensis strain 6021052837, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1003561 32 100.0 33 ................................ CAAGCTCCAAACGGTCATGTTCGGAGATGTTAA 1003626 32 100.0 35 ................................ CTCGAATAGGACGACCGCGTCCGCGCTGCGCGCCT 1003693 32 100.0 37 ................................ GATGACCATCGGGAAGCTGAGACGCTTGATCACCCCG 1003762 32 100.0 35 ................................ ATTGGACGGCGGACGCCGAACTATAAGGGAGGGGT 1003829 32 100.0 37 ................................ TACCCCGCTAGTAATAATAAACGGCGCCAAACTCCCG 1003898 32 100.0 34 ................................ AGGAGAATTGACGAAAAACTTCACTTTCCTATGG 1003964 32 100.0 33 ................................ CGCGACCGCCTTTTTGGCGCTCATCCAGGTTTC 1004029 32 100.0 34 ................................ ATATTTGGGCATCCTCCGCCCCTCCTCTCCTAAA 1004095 32 100.0 36 ................................ GCTGCCGGGAAAGCATCTGAAACCGTAACGCCGGGG 1004163 32 100.0 33 ................................ TCAATTTGCAAAACGCTACCCAGCGCGTCGAGA 1004228 32 100.0 34 ................................ TCTTCCGCGACTGTTTATTATGGTTGGAATACGG 1004294 32 100.0 34 ................................ GAAAATGTGCGTGTAGGAAAGACGTACTTTACCC 1004360 31 96.9 37 .......-........................ GACTCTAAGGGATCGGCCGATCGAAAACCAAGGGATA 1004428 32 100.0 35 ................................ CATTGCATCCTTGCCCTGGATGGAGCTGTTTGCCA 1004495 32 81.2 0 ............AC..............GGCG | ========== ====== ====== ====== ================================ ===================================== ================== 15 32 98.5 35 GTCGCATCCCATGTGGATGCGTGGATTGAAAC # Left flank : ATTGGATGGTTTCGCAAAGCAAGTCCTTGCACGCTATTGAAAGAGCGGCCAGACTTCATAGTGAGTTTGTAAAAATTCATCCTATTGTTGACGGGAACGGGAGAACGGCACGGCTGCTTTTAAATTTTGAACTGATGAAAAACGGATATCCCCCAATTGTCATTGAAAAGGAAAATCGTTTGGAGTACTATTCCGCTCTCGATGAAGCCCATACATCCGGAAATCCGGAAAATTTTGTCGCATTCATTTCGCAAAAAGTCGATCAAACCTTTGATTGGTACCTAAATCTACTCTGACTCCCCCAAAATGAAGTTAGGTATACCTTAGCATTGGTGCGAACCCCAAGCGCACATGTTTTTCCCGGGAGATTCGCACCCCTTGATATGCCTGGGTTTTCGGCTTTTTATCATGAAATTCCTCCTGTTTTGAAGTATAATAAAATGAGATTCGCACTAAAGCGCTTGCAAACCCTTGCTGCATAAGGGCTCTATTGCCGTGCT # Right flank : GGAAGAGTCCTTTGTTGGCCTGGTCTCCGAAAATTCACCCGGACGGAACGGACAACGCGCAGCGGAACTCGCTGGGTGAGACGCCGACTGTTTTTTTGAATACCCGGCTGAAATAATTCGGGTCCCGGTAGCCGACCCGGAGGCTGATGTCCTTCAAAATCTGCTTCGGATCGGCCAGCAGTTCCTTCGCCTTCTCGATGCGCAGCCCGGTCAAATAGTCGATAAACGTCACGCCACAGCTTTCATGGAACAGTTTGCTGAAATAATGCGGATTCAGGCCAACGAATTCCGCCGTCTCTTCGAGCGACAGCTCCCGGTCGAAGCGTTCGGCCAGATACGCTTTAGCTCTTTCGATGCTGCCCCTGTGCTCGTCCGCGTACCATTCGCGCAGCCGCTCGGTCAGCATCCGCAGTTGACTGGCGGCATGACGGCGCAGCTCGTGCTCGTCTCGCAAGGCCGGCAACGCGTTCGGCCAGCGCGCCTCCAGGCCGTGCTCCCTC # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCATGTGGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //