Array 1 107188-108016 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJXI01000004.1 Enterococcus faecalis strain EN242 NODE_4_length_210511_cov_27.9604, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 107188 37 97.3 29 ....................................G CCCGTAATCATCGAGGTGATGAAAAGTAT 107254 37 100.0 29 ..................................... CACACGCATGCAAGTGTACTGCTTGCTGC 107320 37 97.3 29 ....................................C TAACCACATTTGAAGAAGTCTATAACCTT 107386 37 97.3 29 ....................................A TTGACCCATTCTTGATAATCAAGAATGGA 107452 37 100.0 29 ..................................... TTTTTTCAGTTGGTGTTTCAGGTACAATG 107518 37 100.0 29 ..................................... TCATATTGTGTTTCTGAAATGAAATAACT 107584 37 100.0 29 ..................................... GTTCAGTAATATCATAATCCCATTTAACT 107650 37 100.0 29 ..................................... TTATTTTTAACCCAGTCGCCTGCGTTTCC 107716 37 97.3 29 ....................................A TCTCTCCTAATGGAAATCCTTATGATGGA 107782 37 100.0 29 ..................................... TGCAACTGCAGCTTCTGATGGATTTCCCA 107848 37 97.3 29 ....................................G AAAAGCAGTTCGAGCGGAAACTGCGACCA 107914 37 94.6 29 ....................G...............G ACTTACAAAAGACTGTGATTTACGTTATA 107980 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ============================= ================== 13 37 98.3 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Left flank : CATATATCCTCATCAAGTAGTAAATGCTTCTTTTGACTTTCAAGAGGGACGAACAACAGAAGGTGGAGAAATGACACACATGATTGGCTTTGCCACTTCGCAAGAAAATACCTATGAAGATTTGGAGCAACTAAGCGTACCTGCTCATACATGGGCGGTTTTTCCAAATGAAGGTCCTTTCCCACAAACTTTACAAGAAACCTGGGCAAGGATATTCTCTGAATGGTTGCCTTCATCTGGTTACCAAGTCGTTGCAGCACCAGAAATTTCGTTTACGCAATATCAAGGACCAGCAGAAGCTAAGTATAGTGAAATCTGGCTCGCTGTTACAGCTACTAAATAAAGAAAACCCACCATTGAAAAATGGTGGGTTTTTCCGCCAAGAAGGAGAAAGTTTGGTATAATAAACGTGAAGAAAAAAATCAGACCTTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAATACGGAATCATGGAGAAAAAATAATTCTCCGAG # Right flank : AAACTTTTTTGATTTGGCTTTTTCTCCCCTGTTTTATAGTCATGTTGTTAAAAAACAAACTATCACCTCAAGCAATCCGTAATTTTCATCACAAGATTAGAATTTTTATCATCAAAGACGAGCTGCTTCAATTTTTGGAAACTAATCAAGTGATAAGTCAAAATGTTGATAGATTGAGATTAGTTCTTCCTTTTTTTAGGAAGGGCTTTTTTTATTGATAGAAGAAAGGGAAGAAATCTTGGGAGCACCTAAAAAAATTGTGAGAAATGCTTCTGTATTGTTTGGTTTCTGCCTCAGAAAGTTGTATACTTAGATTGGAATTATTCTATATTACATGCATTTTCACACTTTTTGGAAAAGTTCACTTGAATTTTCTTTTAGTTTCGTAGATAAAAGGAGTCATCGCTAATGGAAATGAACAATTCAGGTAAGCTTGTTTCTTTGTGTGGAGGCAAATCAGGGAGGAAATAATATGTTTGATATTGTAACATTGGCGAGAA # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 16108-16298 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJXI01000020.1 Enterococcus faecalis strain EN242 NODE_20_length_52911_cov_30.338, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ============================ ================== 16108 26 100.0 28 .......................... AAGGTGGTGATACAGGTATAACAACGCT 16162 26 92.3 28 ...G...................T.. AAGGAGGCAATACAGATACAACAATGTC 16216 26 100.0 28 .......................... GAAGCAGTGATACAGGTACAACCCCACC 16270 26 80.8 0 G.T....A....T.G........... | TA,C [16290,16293] ========== ====== ====== ====== ========================== ============================ ================== 4 26 93.3 28 ACCAGAACCAGGAGATAGTGGAACTG # Left flank : CAAAAAATTAATCAATATCAACCGTTTCTTCCCGATCTCAATCGAAGTGACGAAGCAGTTGTCTTTGCTAGAGAGCTTGATTATCAAATCGGAAAATCAATAATTGGCTCAGAAGAAAACAAGCAGTTAAAATCGTTATTCACAAAAATTGAGCTTTCCTTTGGAAAAGAGATAATGAATGATCCGAATAATGCACATTTGAAGAAGTTATCGCTATCACTCAACGAACCAAATAGGCAACCTACTCAATCACAAGAAACACCTAAAATACAATCAGCACCACAACGTTCAATAAAAATGCCATCAATGTAAAGGAGAAGAGAAATAATGAAGAAATTTATATTAAGTAGTTTGTTTAGTGCAACTTTATTAGTAGGAGGTGTGTCTCACACTGCTTTTGCGGAGGAAAATTTACCTAGTAATCCTACGACCCCACCAAGTGAAGAAGTGATTCTACCGTTTACTGAAGACAGTACAACCCCAAGTGATCCAGTTCTTCC # Right flank : GGCGATAGTGAGCCAAGCCAAGCAACGCCACCAAATACAGAGAATAGTAATGCAGGTAGTAGTGATACCAATAAACCAACTCCACCAAGTTCAGAAAATACCGACACTGGACATACAGGAACGACTCCACCTACAACTCATGTGGGAGTAAATTCAGACGGGACGATCAATTCATCGGGAAATGGAGCACAAATGACTCCTATTCAAACGAATGATGTGAATGAATTGACACACATTCCAACAGCTTCTACGCCAGTTGAAACCGATACGGGAGAAAAAATCGTTTCCGTTGTAGACGGTGTGGCATACAAACAAGCAAATGATGGGACGTTGACGCCTATAACGGCAGAAGTGAAGCAATTACCTAGTGGAAATATTACAGTCAAAGGATCAGATGGCCAATTAAAAGTTCTACCAAAAACAGGAACAAAACAAACAGTTATGATGACGGTATTAGGTAGTCTTCTCACGTTAGGTTCAGCTTTTGTTTGGTGGAAAAA # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGAACCAGGAGATAGTGGAACTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //