Array 1 239862-238836 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYKU01000013.1 Streptococcus gallolyticus subsp. gallolyticus strain NTS 31106099 contig001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 239861 36 100.0 30 .................................... AATATAACTTTTCACGTGAACAAGTATCAG 239795 36 100.0 31 .................................... TTGTCCCTTTCGCCGTAAGCCATTGCCCACG 239728 36 100.0 30 .................................... TATAGTATATTTTCAAAAAGTTCAAGATAG 239662 36 100.0 30 .................................... TATATTGTGAGTATTGCTCTTTAACGTTTT 239596 36 100.0 30 .................................... CATTAAAGTCAGCGTTTTGTGACACGTCGT 239530 36 100.0 30 .................................... TAATGCTTGTATTCATCTTCTTAAAACTAT 239464 36 100.0 30 .................................... GATAATGTTGTGTTAAGATAATATTGAAAG 239398 36 100.0 29 .................................... TGAGTATGCTGATGTTAGTCAGACAGACT 239333 36 100.0 30 .................................... CTTTTTTCAAAGAATTTTCTGCGTTGTCAA 239267 36 100.0 30 .................................... ACATAGCGACAGCGTGCAGAGATTGCGACA 239201 36 100.0 30 .................................... ACGTAACGATTGATGTCGTTAGGACATGAG 239135 36 100.0 30 .................................... ATATTTGCTCGTTTGCGTTTTCAATTGTCA 239069 36 100.0 30 .................................... AATATAACTTTTCAGATGAACAAGTCGCAG 239003 36 100.0 30 .................................... CCTTGGTAACGCGACCAGTCAACACCTTGG 238937 36 100.0 30 .................................... TATTGGCACTAATTCATCTCTACTTATTTT 238871 36 91.7 0 .................................CTA | ========== ====== ====== ====== ==================================== =============================== ================== 16 36 99.5 30 GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC # Left flank : GGATGATTATCTTGATTATTCTTCTTTCATAACTATTTGTAAGACTATTACGCAAATGACTGAGAAATTTCCTAATTTTTATTGTACAATTTTCCCGTCAAATGAAAGTTATTTATATGTTACTAAAGAAACAATTGAACATGTTACCATTGTTTCAGATTTTATTGAATCATTGTTTGACTTAGATTTTATGTATGAAAGATTTATTGGTAGATACCCATCAAATAATATTCCAAGTAAAAGTGAGTTTTTGATATTACTTCAGAAAAATGCAAGTTATCTGTTTAGTGATCAGATTTCATATATTAGTTTAGGAATTTCAGATATGGTAGCCATTAAGATTTTAAATAGTTTATACCAGTATGATAAGTCTGTTGTATATCCAATACCTAAGATAGACCCGCTAGAAATAAGCTTTTTAAAGGACAGAGATTGACTTTTTTGCCTAATCAAACTATAATCGATTTGTAGGATACAAAAACTAAAAATGACGATTTGAG # Right flank : ATATGCTTTTAGACGAAATCATTTTATAATATTTAACCTTTTTACCATCTTATGATGCTTTTTTCTTTTCTTGAAATGACTTCTAAAACTTTTTATAGCAACGTTTCTGTTTATCTGTTATAATAGAAATAATGATTAATTGTATAGGATTGTAAGATGGATATTCAAGAATTAAAAAAACGACAAGAGAAGATTCGTAATTTCTCTATCATTGCACATATTGACCACGGGAAGTCAACTTTGGCTGACCGTATTTTGGAAAAAACAGAGACGGTTTCTAGTCGTGAAATGCAAGCTCAACTCTTGGATAGCATGGATTTGGAGCGTGAGCGTGGTATCACGATTAAGCTTAATGCGATTGAGTTGAACTACACGGCTAAAGACGGTGAAACCTACATTTTCCACTTGATTGACACCCCAGGACACGTTGACTTTTCATATGAAGTGTCACGTTCTTTGGCGGCTTGTGAGGGGGCAATTTTGGTTGTCGATGCGGCACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 247200-246438 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYKU01000013.1 Streptococcus gallolyticus subsp. gallolyticus strain NTS 31106099 contig001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 247199 36 100.0 30 .................................... ATTGTACGTGATATATTAGATAATTGTGTG 247133 36 100.0 30 .................................... AGAATTTGAAAAAGCAAAAGCAGCAGTTTC 247067 36 100.0 30 .................................... TTTATTAAGTGTGTAATTATCAATCATTAC 247001 36 100.0 30 .................................... CGATTGACATCGGTCATATTGCTAACGCAT 246935 36 100.0 30 .................................... TTTTGGAAACGATGAAAGTAAAAAATATAT 246869 36 100.0 30 .................................... AATTAATTCGCGACATGGATTTTGACAGAC 246803 36 100.0 30 .................................... AGTCAAATTGACATTGTTAACTAACTCAAT 246737 36 100.0 30 .................................... GGTTACAGATTACATTAAAGAAAATTATGA 246671 36 100.0 30 .................................... CACAAAACAGGATAAACTAACTGCTGGTCA 246605 36 100.0 30 .................................... AACACCTCAACACCAATCTTATGGCACACG 246539 36 100.0 30 .................................... TAATATTGTTAATAATAAACTAACTGTTAA 246473 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TATCCAGCAATTTTTCACAAAGAAGGCGATGGAAGTTTTTGGGTAGAATTTCCAGGATTTGGTGGTGGTACCGAAGGTGATGATGTCGAAGAAGCGATGAAAAATGCTCGAGAAATGTTAGAAAGCTCATTGGCTGCTTATCTAGATGAAGGTTTAGAGCTTCCAAAGGTTGTTAATATGAGTGAATTATCAGTTGAAGATGGTTTTATCACTTTAATTCAAGCAGACCCTTCCCCATATTTAAAAAGTACCAAAGCCATTCGAAAAAATGTTACTGTTCCAGAATGGTTAGTCAGATTAGCAGACCGTGAGAATGTGAATTACTCGGAGGTTTTGACACAAGCTTTAGAGAAAAAATTACAGCTTTAAATTGCTATAAACGTTGTAAAATCAAGGTTTTTGAGGTATAATATAGTTAAAATAATGAACCATTCGAGGCTGAAGTCTAGCTGAGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATGGTCCACGAG # Right flank : TTCTGGTATTTAGGATTTAGCAGAAGTAGAATGCCATGAAACTTACTAAAGTTTTAGTGAAAACGCCTTTCAATATTTTTCAAAAGTTTTCTTTTATGGTAAAATAAAAACTGAATTTATTTAGATAGGTTGGATTGTTTACATGGAAAAAACTTTCTTTATGATTAAACCAGATGGCGTGAAACGCGGGCTTGTTGGTGAGGTGCTTCACCGTATTGAACGACGTGGTTTTACAATTGAAAAATTGGAAATGCGTATGGCAACTCCAGAATTATTAGAAAAACATTATGTTGATTTGGTTGACCGACCATTTTTCCCACTAATCGTTGATTTTATGACAAGTGGTCCAGTAATTACTGGTGTTATGTCTGGAAATGAAGTCATCACTTCATGGCGTACGATGATGGGAGCGACAAATCCTAAAGAAGCTCTTCCAGGAACAATCCGCGGAGATTATGCTCAAGCACCAGACGAAGGTGGCGCAACATTTAATATTGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //