Array 1 54811-53518 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVGW01000010.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033854 CFSAN033854_contig0009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 54810 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 54749 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 54688 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 54627 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 54566 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 54505 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 54444 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 54383 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 54322 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 54261 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 54200 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 54139 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 54078 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 54016 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 53913 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 53852 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 53791 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 53730 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 53669 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 53608 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 53547 29 96.6 0 A............................ | A [53520] ========== ====== ====== ====== ============================= ========================================================================== ================== 21 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 72985-70943 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVGW01000010.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033854 CFSAN033854_contig0009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 72984 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 72923 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 72862 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 72801 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 72740 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 72679 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 72618 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 72557 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 72496 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 72435 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 72374 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 72313 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 72252 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 72191 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 72130 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 72069 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 72008 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 71947 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 71886 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 71825 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 71764 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 71703 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 71642 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 71581 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 71520 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 71458 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 71397 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 71336 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 71275 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 71214 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 71153 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 71092 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 71031 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 70970 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //